This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.282715 (15 seq.)
>W1711136362
LVAC01000023
Campylobacterota
Campylobacterales bacterium Epsilon_01 [LVAC]
386350
386275
-
Trp
CCA
[ENA]
¡û
>C171057196
CP017111
Campylobacterota
Sulfurospirillum halorespirans DSM 13726 DSM 13726; PCE-M2 [CP017111]
478426
478501
+
Trp
CCA
-
¡û
>C171118601
CP021416
Campylobacterota
Sulfurospirillum sp. SL2-1 [CP021416]
406056
406131
+
Trp
CCA
-
¡û
>WENV170640742
JFJP01024288
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
1293
1368
+
Trp
CCA
[ENA]
¢þ
>W09110091
ABUV01000001
Campylobacterota
Sulfurospirillum deleyianum DSM 6946 [ABUV]
414686
414611
-
Trp
CCA
[ENA]
¡û
>C181078324
CP023275
Campylobacterota
Sulfurospirillum diekertiae JPD-1 [CP023275]
403031
403106
+
Trp
CCA
-
¡û
>W141814437
JQGK01000004
Campylobacterota
Sulfurospirillum sp. SCADC [JQGK]
41319
41394
+
Trp
CCA
[ENA]
¡û
>C151018372
CP007201
Campylobacterota
Sulfurospirillum multivorans DSM 12446 [CP007201]
453805
453880
+
Trp
CCA
[Ensembl]
¡û
>W1510014733
BBQE01000006
Campylobacterota
Sulfurospirillum cavolei NBRC 109482 [BBQE]
131896
131821
-
Trp
CCA
[ENA]
¡û
>C10111311
CP001816
Campylobacterota
Sulfurospirillum deleyianum DSM 6946 [CP001816]
326935
327010
+
Trp
CCA
[Ensembl]
¡û
>W1511365454
JSEC01000001
Campylobacterota
Sulfurospirillum sp. MES [JSEC]
353605
353680
+
Trp
CCA
[ENA]
¡û
>C121011161
CP003333
Campylobacterota
Sulfurospirillum barnesii SES-3 [CP003333]
350953
351028
+
Trp
CCA
[Ensembl]
¡û
>C161001356
AP014723
Campylobacterota
Sulfurospirillum sp. UCH001 [AP014723]
411346
411421
+
Trp
CCA
-
¡û
>C161001421
AP014724
Campylobacterota
Sulfurospirillum cavolei UCH003 [AP014724]
2353678
2353603
-
Trp
CCA
-
¡û
>W1610947482
LVAC01000023
Campylobacterota
Campylobacterales bacterium Epsilon_01 [LVAC]
386350
386275
-
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK