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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.282776 (62 seq.)
>W1711055056
LRUH01000042
Alphaproteobacteria
Wolbachia endosymbiont of Laodelphax striatellus of Laodelphax striatella [LRUH]
6819
6895
+
Met
CAT
[ENA]
¡û
>W1711088430
LSYX01000035
Alphaproteobacteria
Wolbachia endosymbiont of Dactylopius coccus [LSYX]
892
968
+
Met
CAT
[ENA]
¡û
>W1711088494
LSYY01000162
Alphaproteobacteria
Wolbachia endosymbiont of Dactylopius coccus [LSYY]
27469
27393
-
Met
CAT
[ENA]
¡û
>W1711745717
MUJL01000111
Alphaproteobacteria
Wolbachia pipientis wUni [MUJL]
3559
3483
-
Met
CAT
[ENA]
¡û
>W1711745736
MUJM01000057
Alphaproteobacteria
Wolbachia pipientis wVitA [MUJM]
3554
3478
-
Met
CAT
[ENA]
¡û
>W131052818
AMZJ01000058
Alphaproteobacteria
Wolbachia endosymbiont of Diaphorina citri [AMZJ]
20310
20234
-
Met
CAT
[ENA]
¡û
>W131216088
ATVN01000030
Alphaproteobacteria
Pseudorhodobacter ferrugineus DSM 5888 [ATVN]
442
366
-
Met
CAT
[ENA]
¡û
>W131242650
CAOH01000084
Alphaproteobacteria
Wolbachia pipientis wBol1-b [CAOH]
5433
5509
+
Met
CAT
[ENA]
¡û
>W131243121
CAOU02000037
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila suzukii str. valsugana of Drosophila suzukii [CAOU]
5689
5613
-
Met
CAT
[ENA]
¡û
>C026841
AE017196
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila melanogaster wMel [AE017196]
1107384
1107308
-
Met
CAT
[Ensembl]
¡û
>w005397
AAGB01000016
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila ananassae [AAGB]
2595
2671
+
Met
CAT
[ENA]
¡û
>W141065609
AQQE01000002
Alphaproteobacteria
Wolbachia pipientis wMelPop [AQQE]
4354
4278
-
Met
CAT
[ENA]
¡û
>W141145093
AWUH01000142
Alphaproteobacteria
Wolbachia endosymbiont of Glossina morsitans morsitans [AWUH]
1279
1355
+
Met
CAT
[ENA]
¡û
>W141145099
AWUH01000148
Alphaproteobacteria
Wolbachia endosymbiont of Glossina morsitans morsitans [AWUH]
13622
13546
-
Met
CAT
[ENA]
¡û
>W141240215
CAGB01000077
Alphaproteobacteria
Wolbachia pipientis wAlbB [CAGB]
101
25
-
Met
CAT
[ENA]
¡û
>C08011419
AM999887
Alphaproteobacteria
Wolbachia endosymbiont of Culex quinquefasciatus Pel wPip [AM999887]
973237
973164
-
Met
CAT
[Ensembl]
¡û
>C191074323
CP031221
Alphaproteobacteria
Wolbachia pipientis wAlbB [CP031221]
474728
474804
+
Met
CAT
-
¡û
>C191123129
CP034334
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila mauritiana wMau [CP034334]
116767
116843
+
Met
CAT
-
¡û
>C191123163
CP034335
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila mauritiana wMau [CP034335]
116768
116844
+
Met
CAT
-
¡û
>C191188709
CP041215
Alphaproteobacteria
Wolbachia endosymbiont of Carposina sasakii [CP041215]
73515
73591
+
Met
CAT
-
¡û
>W141812296
JQAM01000036
Alphaproteobacteria
Wolbachia pipientis [JQAM]
17204
17128
-
Met
CAT
[ENA]
¡û
>W09113855
ABZA01000001
Alphaproteobacteria
Wolbachia endosymbiont of Culex quinquefasciatus of Culex quinquefasciatus JHB [ABZA]
197122
197046
-
Met
CAT
[ENA]
¡û
>W09121804
ACFP01000050
Alphaproteobacteria
Wolbachia endosymbiont of Muscidifurax uniraptor [ACFP]
1169
1093
-
Met
CAT
[ENA]
¡û
>W1910213465
FMKF01000062
Alphaproteobacteria
Wolbachia endosymbiont of Bemisia tabaci [FMKF]
1244
1168
-
Met
CAT
[ENA]
¡û
>W1910753964
MKIF01000089
Alphaproteobacteria
Wolbachia sp. wRi [MKIF]
4307
4231
-
Met
CAT
[ENA]
¡û
>W1910759045
MLZJ01000164
Alphaproteobacteria
Wolbachia sp. wMel_KL [MLZJ]
4404
4328
-
Met
CAT
[ENA]
¡û
>W1910760292
MNCG01000165
Alphaproteobacteria
Wolbachia sp. wMel_AMD [MNCG]
7668
7744
+
Met
CAT
[ENA]
¡û
>W1910794357
MRWX01000012
Alphaproteobacteria
Wolbachia pipientis wAus [MRWX]
2673
2749
+
Met
CAT
[ENA]
¡û
>W1910802367
MSYL01000277
Alphaproteobacteria
Wolbachia sp. wRi_2 [MSYL]
4137
4213
+
Met
CAT
[ENA]
¡û
>C09111272
CP001391
Alphaproteobacteria
Wolbachia sp. wRi [CP001391]
1223705
1223629
-
Met
CAT
[Ensembl]
¡û
>W1911239460
NSDR01000078
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila ananassae of Drosophila ananassae wAna_India [NSDR]
7943
8019
+
Met
CAT
[ENA]
¡û
>W1911239480
NSDS01000013
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila ananassae of Drosophila ananassae wAna_Hawaii [NSDS]
7755
7831
+
Met
CAT
[ENA]
¡û
>W1911239544
NSDT01000119
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila ananassae of Drosophila ananassae wAna_Indonesia [NSDT]
7943
8019
+
Met
CAT
[ENA]
¡û
>W1911281121
NTHL01000080
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila subpulchrella of Drosophila subpulchrella wSpc [NTHL]
5572
5496
-
Met
CAT
[ENA]
¡û
>W1911412149
NWVH01000034
Alphaproteobacteria
Wolbachia pipientis FL2016 [NWVH]
116
40
-
Met
CAT
[ENA]
¡û
>W1911412195
NWVI01000078
Alphaproteobacteria
Wolbachia pipientis HN2016 [NWVI]
5158
5234
+
Met
CAT
[ENA]
¡û
>W1911412258
NWVJ01000106
Alphaproteobacteria
Wolbachia pipientis HN2016 [NWVJ]
2748
2824
+
Met
CAT
[ENA]
¡û
>W1911412268
NWVK01000024
Alphaproteobacteria
Wolbachia pipientis FL2016 [NWVK]
15173
15249
+
Met
CAT
[ENA]
¡û
>W1911545118
OUNE01000099
Alphaproteobacteria
Wolbachia endosymbiont of Aleurodicus dispersus WBAD (OUNE) of Aleurodicus dispersus WBAD [OUNE]
893
817
-
Met
CAT
[ENA]
¡û
>W1911545142
OUNF01000150
Alphaproteobacteria
Wolbachia endosymbiont of Aleurodicus floccissimus WBAF (OUNF) of Aleurodicus floccissimus WBAF [OUNF]
14273
14197
-
Met
CAT
[ENA]
¡û
>W1810758345
QPIP01000029
Alphaproteobacteria
Wolbachia endosymbiont of Cylisticus convexus of Cylisticus convexus Wcon [QPIP]
6836
6912
+
Met
CAT
[ENA]
¡û
>C151102217
LK055284
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila simulans wAu [LK055284]
1107162
1107086
-
Met
CAT
[Ensembl]
¡û
>ENV09001652
ACQI01000650
Hydrothermal vent metagenome LCHCB.C1
474
398
-
Met
CAT
[ENA]
¡û
>W1510562613
CTEH01000002
Alphaproteobacteria
Wolbachia endosymbiont of Culex molestus wPip_Mol of Culex molestus [CTEH]
470482
470406
-
Met
CAT
[ENA]
¡û
>W1511536225
JYPC01000055
Alphaproteobacteria
Wolbachia endosymbiont of Operophtera brumata of Operophtera brumata Ob_Wba [JYPC]
24244
24168
-
Met
CAT
[ENA]
¡û
>W11145946
AERW01000226
Alphaproteobacteria
Wolbachia endosymbiont of Nasonia vitripennis wVitB of Nasonia vitripennis [AERW]
248
172
-
Met
CAT
[ENA]
¡û
>W1511698395
LGHT01000002
Alphaproteobacteria
Pseudorhodobacter wandonensis KCTC 23672 [LGHT]
5911
5987
+
Met
CAT
[ENA]
¡û
>W1511698398
LGHT01000018
Alphaproteobacteria
Pseudorhodobacter wandonensis KCTC 23672 [LGHT]
1578
1502
-
Met
CAT
[ENA]
¡û
>W1511698475
LGHV01000002
Alphaproteobacteria
Pseudorhodobacter ferrugineus LMG 22047 [LGHV]
429
353
-
Met
CAT
[ENA]
¡û
>W11185736
CACK01000104
Alphaproteobacteria
Wolbachia endosymbiont of Culex pipiens molestus [CACK]
5423
5499
+
Met
CAT
[ENA]
¡û
>W1610092022
CXSU01000003
Alphaproteobacteria
Jannaschia donghaensis [CXSU]
78
2
-
Met
CAT
[ENA]
¡û
>W1610092023
CXSU01000005
Alphaproteobacteria
Jannaschia donghaensis [CXSU]
13
89
+
Met
CAT
[ENA]
¡û
>W1610092050
CXSU01000012
Alphaproteobacteria
Jannaschia donghaensis [CXSU]
1685149
1685073
-
Met
CAT
[ENA]
¡û
>C131009113
CP003883
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila simulans wNo [CP003883]
597362
597438
+
Met
CAT
[Ensembl]
¡û
>C131009157
CP003884
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila simulans wHa [CP003884]
1134746
1134670
-
Met
CAT
[Ensembl]
¡û
>W1610896102
LRUH01000042
Alphaproteobacteria
Wolbachia endosymbiont of Laodelphax striatellus of Laodelphax striatella [LRUH]
6819
6895
+
Met
CAT
[ENA]
¡û
>W1610922969
LSYX01000035
Alphaproteobacteria
Wolbachia endosymbiont of Dactylopius coccus [LSYX]
892
968
+
Met
CAT
[ENA]
¡û
>W1610923033
LSYY01000162
Alphaproteobacteria
Wolbachia endosymbiont of Dactylopius coccus [LSYY]
27469
27393
-
Met
CAT
[ENA]
¡û
>W1710095379
CXSU01000003
Alphaproteobacteria
Jannaschia donghaensis [CXSU]
78
2
-
Met
CAT
[ENA]
¡û
>W1710095380
CXSU01000005
Alphaproteobacteria
Jannaschia donghaensis [CXSU]
13
89
+
Met
CAT
[ENA]
¡û
>W1710095407
CXSU01000012
Alphaproteobacteria
Jannaschia donghaensis [CXSU]
1685149
1685073
-
Met
CAT
[ENA]
¡û
>W1710531943
FNPX01000042
Alphaproteobacteria
Jannaschia faecimaris [FNPX]
5788
5864
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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