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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.282797 (33 seq.)
>W1710862427
LMEJ01000010
Alphaproteobacteria
Sphingomonas sp. Root1294 [LMEJ]
281221
281145
-
His
GTG
[ENA]
¡û
>W1710863928
LMFM01000014
Alphaproteobacteria
Sphingomonas sp. Root50 [LMFM]
51120
51196
+
His
GTG
[ENA]
¡û
>W1710867188
LMIB01000015
Alphaproteobacteria
Sphingomonas sp. Root710 [LMIB]
339916
339840
-
His
GTG
[ENA]
¡û
>W1710867298
LMID01000014
Alphaproteobacteria
Sphingomonas sp. Root720 [LMID]
50746
50822
+
His
GTG
[ENA]
¡û
>C171047033
CP016306
Alphaproteobacteria
Sphingomonas sp. KC8 [CP016306]
390337
390413
+
His
GTG
-
¡û
>C171117078
CP021181
Alphaproteobacteria
Rhizorhabdus wittichii DC-6 [CP021181]
892166
892090
-
His
GTG
-
¡û
>W131098380
AORL01000021
Alphaproteobacteria
Sphingomonas sp. PR090111-T3T-6A [AORL]
696862
696786
-
His
GTG
[ENA]
¡û
>W131196583
ASTM01000031
Alphaproteobacteria
Sphingomonas sp. YL-JM2C [ASTM]
33133
33209
+
His
GTG
[ENA]
¡û
>C024964
CP000699
Alphaproteobacteria
Rhizorhabdus wittichii RW1 [CP000699]
4375752
4375828
+
His
GTG
[Ensembl]
¡û
>WENV180020533
FTCZ01005642
[FTCZ] metagenome; soil
5966
5890
-
His
GTG
[ENA]
¢þ
>WENV180020625
FTCZ01007602
[FTCZ] metagenome; soil
339
415
+
His
GTG
[ENA]
¢þ
>WENV180026296
FTIT01001064
[FTIT] metagenome; soil
353
277
-
His
GTG
[ENA]
¢þ
>WENV180026395
FTIT01037638
[FTIT] metagenome; soil
727
651
-
His
GTG
[ENA]
¢þ
>WENV170010235
APMI01011178
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
6042
6118
+
His
GTG
[ENA]
¢þ
>C181081612
CP023449
Alphaproteobacteria
Rhizorhabdus dicambivorans Ndbn-20 [CP023449]
4465939
4465863
-
His
GTG
-
¡û
>C191095152
CP032829
Alphaproteobacteria
Sphingomonas paeninsulae YZ-8 [CP032829]
230792
230716
-
His
GTG
-
¡û
>W09106501
AAVK01000002
Alphaproteobacteria
Rhizorhabdus wittichii RW1 [AAVK]
244296
244372
+
His
GTG
[ENA]
¡û
>W141713947
JMUB01000036
Alphaproteobacteria
Rhizorhabdus wittichii DC-6 [JMUB]
25959
25883
-
His
GTG
[ENA]
¡û
>W141819162
JQMC01000002
Alphaproteobacteria
Rhizorhabdus wittichii [JQMC]
112054
111978
-
His
GTG
[ENA]
¡û
>C141006132
CP006644
Alphaproteobacteria
Sphingomonas sanxanigenens DSM 19645 = NX02 [CP006644]
2734383
2734307
-
His
GTG
[Ensembl]
¡û
>W1911391064
NWBU01000010
Alphaproteobacteria
Sphingomonas oleivorans FW-11 [NWBU]
463170
463246
+
His
GTG
[ENA]
¡û
>W1911411133
NWUF01000002
Alphaproteobacteria
Rhizorhabdus dicambivorans Ndbn-20m [NWUF]
247113
247189
+
His
GTG
[ENA]
¡û
>W1511581124
LARW01000112
Alphaproteobacteria
Sphingomonas sp. SRS2 [LARW]
25204
25128
-
His
GTG
[ENA]
¡û
>W1511633040
LDES01000024
Alphaproteobacteria
Sphingomonas sp. Y57 [LDES]
300534
300610
+
His
GTG
[ENA]
¡û
>W11167359
AFMP01000042
Alphaproteobacteria
Sphingomonas sp. KC8 [AFMP]
29231
29155
-
His
GTG
[ENA]
¡û
>W121034448
AHKO01000615
Alphaproteobacteria
Rhizorhabdus wittichii DP58 [AHKO]
6133
6209
+
His
GTG
[ENA]
¡û
>W1610724773
LMEJ01000010
Alphaproteobacteria
Sphingomonas sp. Root1294 [LMEJ]
281221
281145
-
His
GTG
[ENA]
¡û
>W1610726274
LMFM01000014
Alphaproteobacteria
Sphingomonas sp. Root50 [LMFM]
51120
51196
+
His
GTG
[ENA]
¡û
>W1610729534
LMIB01000015
Alphaproteobacteria
Sphingomonas sp. Root710 [LMIB]
339916
339840
-
His
GTG
[ENA]
¡û
>W1610729644
LMID01000014
Alphaproteobacteria
Sphingomonas sp. Root720 [LMID]
50746
50822
+
His
GTG
[ENA]
¡û
>W1710512393
FMZJ01000016
Alphaproteobacteria
Sphingomonas sp. YR710 [FMZJ]
75172
75248
+
His
GTG
[ENA]
¡û
>W1710602732
FUYM01000002
Alphaproteobacteria
Rhizorhabdus histidinilytica [FUYM]
472381
472457
+
His
GTG
[ENA]
¡û
>W1710743460
LGVA01000006
Alphaproteobacteria
Sphingomonas sp. Ndbn-20 [LGVA]
65816
65892
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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