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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.282834 (9 seq.)
>WENV170178406
CEOV01039389
[CEOV] marine metagenome genome assembly TARA_062_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
117
192
+
Trp
CCA
[ENA]
¢þ
>WENV170469149
CEVF01089509
[CEVF] marine metagenome genome assembly TARA_124_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
173
248
+
Trp
CCA
[ENA]
¢þ
>WENV170846838
MDTA01049555
[MDTA] marine metagenome; seawater
1731
1806
+
Trp
CCA
[ENA]
¢þ
>W1511590318
LBGV01000001
Bacteroidota
Persicobacter sp. CCB-QB2 [LBGV]
925659
925732
+
Trp
CCA
[ENA]
¡û
>W1511590320
LBGV01000001
Bacteroidota
Persicobacter sp. CCB-QB2 [LBGV]
925855
925930
+
Trp
CCA
[ENA]
¡û
>W1511590322
LBGV01000001
Bacteroidota
Persicobacter sp. CCB-QB2 [LBGV]
926052
926125
+
Trp
CCA
[ENA]
¡û
>C161046298
CP012851
Bacteroidota
Persicobacter sp. JZB09 [CP012851]
2101201
2101274
+
Trp
CCA
-
¡û
>C161046300
CP012851
Bacteroidota
Persicobacter sp. JZB09 [CP012851]
2101396
2101471
+
Trp
CCA
-
¡û
>C161046302
CP012851
Bacteroidota
Persicobacter sp. JZB09 [CP012851]
2101593
2101666
+
Trp
CCA
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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