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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.282835 (25 seq.)
>W1711510487
MLAY01000004
Bacteroidota
marine bacterium AO1-C [MLAY]
867593
867518
-
Gly
TCC
[ENA]
¡û
>W131165481
ARBP01000007
Bacteroidota
Flexithrix dorotheae DSM 6795 [ARBP]
21533
21606
+
Gly
TCC
[ENA]
¡û
>WENV180053347
MPLV02011074
[MPLV] marine metagenome; 100 m water sample filtered on 0.2 um supor filter
497
424
-
Gly
TCC
[ENA]
¢þ
>WENV183734771
PJUA01000007
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
122388
122461
+
Gly
TCC
[ENA]
¢þ
>WENV170014157
AVFP01029204
[AVFP] microbial mat metagenome; pink berry consortia of the Sippewissett salt marsh
191
116
-
Gly
TCC
[ENA]
¢þ
>WENV170024399
BCQL01053745
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
209
136
-
Gly
TCC
[ENA]
¢þ
>WENV170300924
CESG01221337
[CESG] marine metagenome genome assembly TARA_078_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
483
556
+
Gly
TCC
[ENA]
¢þ
>WENV170829732
MDSZ01014047
[MDSZ] marine metagenome; seawater
10348
10275
-
Gly
TCC
[ENA]
¢þ
>WENV170867311
MDTB01145021
[MDTB] marine metagenome; seawater
721
648
-
Gly
TCC
[ENA]
¢þ
>C191062398
CP028923
Bacteroidota
Mangrovivirga cuniculi R1DC9 [CP028923]
929851
929924
+
Gly
TCC
-
¡û
>W1910584224
JXSZ01000016
Bacteroidota
Jiulongibacter sediminis JN14-9 [JXSZ]
26551
26624
+
Gly
TCC
[ENA]
¡û
>SRA1006547
SRR020488.128404
Microbial community gene content and expression in the Central North Pacific Gyre, Station ALOHA, HOT186 (SRP001041)
122
195
+
Gly
TCC
[SRA]
>W1511590327
LBGV01000001
Bacteroidota
Persicobacter sp. CCB-QB2 [LBGV]
2178356
2178431
+
Gly
TCC
[ENA]
¡û
>W1511590329
LBGV01000001
Bacteroidota
Persicobacter sp. CCB-QB2 [LBGV]
2178595
2178670
+
Gly
TCC
[ENA]
¡û
>W1511590332
LBGV01000001
Bacteroidota
Persicobacter sp. CCB-QB2 [LBGV]
2178924
2178997
+
Gly
TCC
[ENA]
¡û
>W1511590335
LBGV01000001
Bacteroidota
Persicobacter sp. CCB-QB2 [LBGV]
2179256
2179331
+
Gly
TCC
[ENA]
¡û
>W1511590338
LBGV01000001
Bacteroidota
Persicobacter sp. CCB-QB2 [LBGV]
2179585
2179658
+
Gly
TCC
[ENA]
¡û
>C161046307
CP012851
Bacteroidota
Persicobacter sp. JZB09 [CP012851]
3290361
3290436
+
Gly
TCC
-
¡û
>C161046309
CP012851
Bacteroidota
Persicobacter sp. JZB09 [CP012851]
3290601
3290676
+
Gly
TCC
-
¡û
>C161046312
CP012851
Bacteroidota
Persicobacter sp. JZB09 [CP012851]
3290930
3291003
+
Gly
TCC
-
¡û
>C161046315
CP012851
Bacteroidota
Persicobacter sp. JZB09 [CP012851]
3291264
3291337
+
Gly
TCC
-
¡û
>C161046318
CP012851
Bacteroidota
Persicobacter sp. JZB09 [CP012851]
3291595
3291668
+
Gly
TCC
-
¡û
>W1610617471
LGTQ01000016
Bacteroidota
Jiulongibacter sediminis JN14-9 [LGTQ]
26551
26626
+
Gly
TCC
[ENA]
¡û
>W1710557639
FOLE01000006
Bacteroidota
Flexibacter flexilis DSM 6793 [FOLE]
166324
166397
+
Gly
TCC
[ENA]
¡û
>W1710743058
LGTQ01000016
Bacteroidota
Jiulongibacter sediminis JN14-9 [LGTQ]
26551
26626
+
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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