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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.282839 (28 seq.)
>W1711079388
LSOB01000017
Gammaproteobacteria
Serratia marcescens [LSOB]
270892
270967
+
Lys
CTT
[ENA]
¡û
>W1711475692
MJVC01000011
Gammaproteobacteria
Serratia marcescens [MJVC]
64957
64882
-
Lys
CTT
[ENA]
¡û
>W1711711746
MTBF01000012
Gammaproteobacteria
Serratia marcescens [MTBF]
96633
96558
-
Lys
CTT
[ENA]
¡û
>W1711711946
MTBJ01000002
Gammaproteobacteria
Serratia nematodiphila [MTBJ]
226299
226224
-
Lys
CTT
[ENA]
¡û
>C171054182
CP016948
Gammaproteobacteria
Serratia surfactantfaciens YD25 [CP016948]
1204939
1205014
+
Lys
CTT
-
¡û
>WENV180422253
OBVS01002694
[OBVS] human gut metagenome; faeces
397
322
-
Lys
CTT
[ENA]
¢þ
>WENV180559347
OCKC01000047
[OCKC] human gut metagenome; Infant 2 DOL 26 gut
88312
88387
+
Lys
CTT
[ENA]
¢þ
>WENV170660805
JXWU01034957
[JXWU] soil metagenome; rice field; organic control Plot
241
166
-
Lys
CTT
[ENA]
¢þ
>W141810372
JPUX01000001
Gammaproteobacteria
Serratia nematodiphila [JPUX]
4212686
4212611
-
Lys
CTT
[ENA]
¡û
>W1910888340
NERL01000025
Gammaproteobacteria
Serratia marcescens KHCo-24B [NERL]
96641
96566
-
Lys
CTT
[ENA]
¡û
>W1810084743
PESM01000080
Gammaproteobacteria
Serratia marcescens subsp. sakuensis K27 [PESM]
67365
67440
+
Lys
CTT
[ENA]
¡û
>W1810085522
PETD01000006
Gammaproteobacteria
Serratia sp. TKO39 [PETD]
178868
178943
+
Lys
CTT
[ENA]
¡û
>W1810236095
PPGC01000002
Gammaproteobacteria
Serratia marcescens JES_110 [PPGC]
604122
604047
-
Lys
CTT
[ENA]
¡û
>W1810236137
PPGE01000001
Gammaproteobacteria
Serratia marcescens ADJS-2C_Purple [PPGE]
372485
372560
+
Lys
CTT
[ENA]
¡û
>W1810423550
PYTW01000009
Gammaproteobacteria
Serratia sp. Nf2 [PYTW]
233788
233863
+
Lys
CTT
[ENA]
¡û
>C151100360
HG326223
Gammaproteobacteria
Serratia marcescens subsp. marcescens Db11 [HG326223]
1135940
1136015
+
Lys
CTT
[Ensembl]
¡û
>W1511458801
JVJT01000018
Gammaproteobacteria
Serratia marcescens 370_SMAR [JVJT]
29467
29392
-
Lys
CTT
[ENA]
¡û
>W1511462076
JVNC01000043
Gammaproteobacteria
Serratia marcescens 280_SMAR [JVNC]
57781
57706
-
Lys
CTT
[ENA]
¡û
>W1511472852
JVZU01000007
Gammaproteobacteria
Serratia marcescens 1186_SMAR [JVZU]
6508
6433
-
Lys
CTT
[ENA]
¡û
>C161050135
CP013046
Gammaproteobacteria
Serratia marcescens B3R3 [CP013046]
2404801
2404876
+
Lys
CTT
[Ensembl]
¡û
>C161093610
CP016032
Gammaproteobacteria
Serratia marcescens U36365 [CP016032]
1861114
1861189
+
Lys
CTT
-
¡û
>W1610203724
FCMI01000009
Gammaproteobacteria
Serratia marcescens [FCMI]
121283
121208
-
Lys
CTT
[ENA]
¡û
>C131010551
CP003959
Gammaproteobacteria
Serratia marcescens WW4 [CP003959]
1955001
1955076
+
Lys
CTT
[Ensembl]
¡û
>W1610918298
LSOB01000017
Gammaproteobacteria
Serratia marcescens [LSOB]
270892
270967
+
Lys
CTT
[ENA]
¡û
>W1710205340
FCMI01000009
Gammaproteobacteria
Serratia marcescens [FCMI]
121283
121208
-
Lys
CTT
[ENA]
¡û
>W1710506717
FMUT01000002
Gammaproteobacteria
Serratia nematodiphila [FMUT]
227047
226972
-
Lys
CTT
[ENA]
¡û
>W1710615812
JELU01000446
Gammaproteobacteria
Serratia nematodiphila DZ0503SBS1 [JELU]
192
117
-
Lys
CTT
[ENA]
¡û
>W133004362
ATOI01000067
Gammaproteobacteria
Serratia marcescens MC6000 [ATOI]
40448
40373
-
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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