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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.282860 (25 seq.)
>WENV180022328
FTFY01000894
[FTFY] metagenome; soil
19232
19157
-
Trp
CCA
[ENA]
¢þ
>WENV180026556
FTIU01002580
[FTIU] metagenome; soil
214
289
+
Trp
CCA
[ENA]
¢þ
>WENV180252224
OBEQ010432114
[OBEQ] groundwater metagenome; groundwater
4505
4430
-
Trp
CCA
[ENA]
¢þ
>W141258921
CBXX010000054
Betaproteobacteria
Herbaspirillum sp. RV1423 [CBXX]
20359
20284
-
Trp
CCA
[ENA]
¡û
>WENV170551296
CXWJ01003240
[CXWJ] wastewater metagenome; activated sludge
2096
2021
-
Trp
CCA
[ENA]
¢þ
>WENV170639324
JFJP01001899
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
202
277
+
Trp
CCA
[ENA]
¢þ
>C181071848
CP022736
Betaproteobacteria
Herbaspirillum sp. meg3 [CP022736]
5087839
5087764
-
Trp
CCA
-
¡û
>W1911572365
PDBX01000001
Betaproteobacteria
Collimonas sp. PA-H2 [PDBX]
2806323
2806398
+
Trp
CCA
[ENA]
¡û
>W1810400027
PYFP01000002
Betaproteobacteria
Glaciimonas sp. PCH181 [PYFP]
898810
898735
-
Trp
CCA
[ENA]
¡û
>W1810887537
QUQN01000006
Betaproteobacteria
Herbaspirillum sp. 3R-3a1 [QUQN]
319336
319411
+
Trp
CCA
[ENA]
¡û
>C151062581
CP009962
Betaproteobacteria
Collimonas arenae Cal35 [CP009962]
459428
459503
+
Trp
CCA
[Ensembl]
¡û
>C151082373
CP011409
Betaproteobacteria
Herbaspirillum hiltneri N3 [CP011409]
4806764
4806689
-
Trp
CCA
-
¡û
>C11105056
CP002745
Betaproteobacteria
Collimonas fungivorans Ter331 [CP002745]
487527
487602
+
Trp
CCA
[Ensembl]
¡û
>W1511683894
LFLU01000030
Betaproteobacteria
Herbaspirillum rhizosphaerae UMS-37 [LFLU]
556
631
+
Trp
CCA
[ENA]
¡û
>C161053577
CP013232
Betaproteobacteria
Collimonas fungivorans Ter6 [CP013232]
690989
691064
+
Trp
CCA
[Ensembl]
¡û
>C161053625
CP013233
Betaproteobacteria
Collimonas arenae Ter10 [CP013233]
305177
305252
+
Trp
CCA
-
¡û
>C161053672
CP013234
Betaproteobacteria
Collimonas pratensis Ter91 [CP013234]
488837
488912
+
Trp
CCA
[Ensembl]
¡û
>C161053720
CP013235
Betaproteobacteria
Collimonas arenae Ter282 [CP013235]
305207
305282
+
Trp
CCA
[Ensembl]
¡û
>C161053770
CP013236
Betaproteobacteria
Collimonas pratensis Ter291 [CP013236]
416900
416975
+
Trp
CCA
[Ensembl]
¡û
>W121061980
AJHH01000675
Betaproteobacteria
Herbaspirillum lusitanum P6-12 [AJHH]
12754
12679
-
Trp
CCA
[ENA]
¡û
>W121086359
AKJW01000005
Betaproteobacteria
Herbaspirillum sp. CF444 [AKJW]
131
206
+
Trp
CCA
[ENA]
¡û
>W1710530384
FNOR01000034
Betaproteobacteria
Collimonas sp. OK242 [FNOR]
18796
18721
-
Trp
CCA
[ENA]
¡û
>W1710556469
FOKF01000065
Betaproteobacteria
Collimonas sp. OK607 [FOKF]
18518
18443
-
Trp
CCA
[ENA]
¡û
>W1710557554
FOLC01000045
Betaproteobacteria
Collimonas sp. OK412 [FOLC]
18215
18140
-
Trp
CCA
[ENA]
¡û
>W1710564245
FOQI01000032
Betaproteobacteria
Collimonas sp. OK307 [FOQI]
19102
19027
-
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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