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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.282881 (24 seq.)
>W1711170202
LWAF01000006
Thermotogota
Fervidobacterium thailandense thailandensis [LWAF]
40758
40833
+
Gly
CCC
[ENA]
¡û
>W1711629401
MPOW01000375
Thermotogota
Thermotogales bacterium EBM-19 [MPOW]
23653
23728
+
Gly
CCC
[ENA]
¡û
>W131193870
ASPL01000022
Thermotogota
Thermotogota bacterium JGI 0000106-O11 JGI 0000106-O11 [ASPL]
5093
5168
+
Gly
CCC
[ENA]
¡û
>w019748
AAUK01000015
Thermotogota
Fervidobacterium nodosum Rt17-B1 [AAUK]
37607
37684
+
Gly
CCC
[ENA]
¡û
>WENV180097933
MTBK01219136
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
1090
1015
-
Gly
CCC
[ENA]
¢þ
>WENV180295370
OBIZ01076881
[OBIZ] soil metagenome; soil
502
430
-
Gly
CCC
[ENA]
¢þ
>WENV180352244
OBLQ010202986
[OBLQ] soil metagenome; soil
454
526
+
Gly
CCC
[ENA]
¢þ
>WENV181226180
OFDK01000181
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
13993
14068
+
Gly
CCC
[ENA]
¢þ
>WENV181285331
OFGS01000003
[OFGS] hot springs metagenome; Water and soil
106099
106174
+
Gly
CCC
[ENA]
¢þ
>WENV181297538
OFHK01065840
[OFHK] soil metagenome; Clay
77
149
+
Gly
CCC
[ENA]
¢þ
>WENV181416204
OGCL01060433
[OGCL] hot springs metagenome; Hot spring water
639
566
-
Gly
CCC
[ENA]
¢þ
>C08004968
CP000771
Thermotogota
Fervidobacterium nodosum Rt17-B1 [CP000771]
118612
118687
+
Gly
CCC
[Ensembl]
¡û
>C181217937
LS974202
Thermotogota
Mesotoga infera [LS974202]
2666871
2666796
-
Gly
CCC
-
¡û
>C09106806
CP001634
Thermotogota
Kosmotoga olearia TBF 19.5.1 [CP001634]
2162941
2162866
-
Gly
CCC
[Ensembl]
¡û
>C09110470
CP001185
Thermotogota
Thermosipho africanus TCF52B [CP001185]
1908990
1909065
+
Gly
CCC
[Ensembl]
¡û
>W1910573544
JPMG01000006
Thermotogota
Fervidobacterium sp. SC_NGM5_O18 [JPMG]
7048
7123
+
Gly
CCC
[ENA]
¡û
>W1910573574
JPMH01000017
Thermotogota
Fervidobacterium sp. SC_NGM5_G05 [JPMH]
351
426
+
Gly
CCC
[ENA]
¡û
>W1511355464
JRRD02000001
Thermotogota
Fervidobacterium islandicum AW-1 [JRRD]
639496
639421
-
Gly
CCC
[ENA]
¡û
>C121009879
CP003260
Thermotogota
Fervidobacterium pennivorans DSM 9078 [CP003260]
367268
367343
+
Gly
CCC
[Ensembl]
¡û
>C161034998
CP011393
Thermotogota
Fervidobacterium pennivorans DYC [CP011393]
1030081
1030006
-
Gly
CCC
[Ensembl]
¡û
>C161071266
CP014334
Thermotogota
Fervidobacterium islandicum AW-1 [CP014334]
438649
438724
+
Gly
CCC
[Ensembl]
¡û
>W121010855
AGJO01000007
Thermotogota
Fervidobacterium pennivorans DSM 9078 [AGJO]
26854
26779
-
Gly
CCC
[ENA]
¡û
>W1710517608
FNDL01000020
Thermotogota
Fervidobacterium changbaicum [FNDL]
41488
41563
+
Gly
CCC
[ENA]
¡û
>W1710593339
FRDJ01000003
Thermotogota
Fervidobacterium gondwanense DSM 13020 [FRDJ]
162328
162403
+
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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