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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.282887 (20 seq.)
>W1711170217
LWAF01000019
Thermotogota
Fervidobacterium thailandense thailandensis [LWAF]
21265
21190
-
His
GTG
[ENA]
¡û
>w019743
AAUK01000011
Thermotogota
Fervidobacterium nodosum Rt17-B1 [AAUK]
17161
17238
+
His
GTG
[ENA]
¡û
>WENV180013909
FPIC01009256
[FPIC] soil metagenome; Soil
34536
34461
-
His
GTG
[ENA]
¢þ
>WENV180014412
FQKF010008172
[FQKF] soil metagenome; Soil
3218
3143
-
His
GTG
[ENA]
¢þ
>WENV181226257
OFDK01000388
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
6683
6758
+
His
GTG
[ENA]
¢þ
>WENV181285318
OFGS01000002
[OFGS] hot springs metagenome; Water and soil
133763
133838
+
His
GTG
[ENA]
¢þ
>C08005003
CP000771
Thermotogota
Fervidobacterium nodosum Rt17-B1 [CP000771]
1133170
1133098
-
His
GTG
[Ensembl]
¡û
>W09113933
ABZD01000007
Thermotogota
Kosmotoga olearia TBF 19.5.1 [ABZD]
127671
127596
-
His
GTG
[ENA]
¡û
>C09106792
CP001634
Thermotogota
Kosmotoga olearia TBF 19.5.1 [CP001634]
356180
356255
+
His
GTG
[Ensembl]
¡û
>W1910573552
JPMG01000012
Thermotogota
Fervidobacterium sp. SC_NGM5_O18 [JPMG]
14883
14808
-
His
GTG
[ENA]
¡û
>W1910573589
JPMH01000052
Thermotogota
Fervidobacterium sp. SC_NGM5_G05 [JPMH]
9703
9778
+
His
GTG
[ENA]
¡û
>W1511355436
JRRD02000001
Thermotogota
Fervidobacterium islandicum AW-1 [JRRD]
1578915
1578990
+
His
GTG
[ENA]
¡û
>C121009893
CP003260
Thermotogota
Fervidobacterium pennivorans DSM 9078 [CP003260]
1301556
1301631
+
His
GTG
[Ensembl]
¡û
>C161034984
CP011393
Thermotogota
Fervidobacterium pennivorans DYC [CP011393]
1928050
1928125
+
His
GTG
[Ensembl]
¡û
>C161071280
CP014334
Thermotogota
Fervidobacterium islandicum AW-1 [CP014334]
1331047
1331122
+
His
GTG
[Ensembl]
¡û
>W121010834
AGJO01000002
Thermotogota
Fervidobacterium pennivorans DSM 9078 [AGJO]
304529
304454
-
His
GTG
[ENA]
¡û
>W1610520940
JGCK01000014
Thermotogota
Kosmotoga sp. DU53 [JGCK]
16256
16331
+
His
GTG
[ENA]
¡û
>W1710517602
FNDL01000016
Thermotogota
Fervidobacterium changbaicum [FNDL]
8574
8499
-
His
GTG
[ENA]
¡û
>W1710593350
FRDJ01000004
Thermotogota
Fervidobacterium gondwanense DSM 13020 [FRDJ]
163648
163723
+
His
GTG
[ENA]
¡û
>W1710617190
JGCK01000014
Thermotogota
Kosmotoga sp. DU53 [JGCK]
16256
16331
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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