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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.282941 (46 seq.)
>W1710822426
LKUW01000048
Betaproteobacteria
Paracidovorax citrulli [LKUW]
27704
27779
+
Thr
TGT
[ENA]
¡û
>W1710875993
LMOV01000025
Betaproteobacteria
Acidovorax sp. Leaf160 [LMOV]
177037
176962
-
Thr
TGT
[ENA]
¡û
>W1711581701
MNUL01000092
Betaproteobacteria
Comamonadaceae bacterium CG1_02_60_18 [MNUL]
36173
36248
+
Thr
TGT
[ENA]
¡û
>W1711584032
MNXY01000183
Betaproteobacteria
Comamonadaceae bacterium CG2_30_60_41 [MNXY]
11775
11850
+
Thr
TGT
[ENA]
¡û
>W1712096695
NIAZ01000002
Betaproteobacteria
Acidovorax sp. T1m [NIAZ]
123561
123486
-
Thr
TGT
[ENA]
¡û
>C171091627
CP019236
Betaproteobacteria
Rhodoferax koreense DCY-110 [CP019236]
1447122
1447197
+
Thr
TGT
-
¡û
>C171118067
CP021359
Betaproteobacteria
Acidovorax carolinensis NA2 [CP021359]
3224668
3224593
-
Thr
TGT
-
¡û
>C171118118
CP021361
Betaproteobacteria
Acidovorax carolinensis NA3 [CP021361]
3396368
3396293
-
Thr
TGT
-
¡û
>C171118142
CP021362
Betaproteobacteria
Acidovorax carolinensis P3 [CP021362]
734254
734329
+
Thr
TGT
-
¡û
>C171118220
CP021366
Betaproteobacteria
Acidovorax carolinensis P4 [CP021366]
3347002
3346927
-
Thr
TGT
-
¡û
>C171120920
CP021648
Betaproteobacteria
Acidovorax sp. T1 [CP021648]
811802
811877
+
Thr
TGT
-
¡û
>W131045651
AMRP01000220
Betaproteobacteria
Paracidovorax citrulli ZJU1106 [AMRP]
120
195
+
Thr
TGT
[ENA]
¡û
>W131227139
AUEX01000035
Betaproteobacteria
Acidovorax sp. JHL-9 [AUEX]
25928
25853
-
Thr
TGT
[ENA]
¡û
>C000134
CP000512
Betaproteobacteria
Paracidovorax citrulli AAC00-1 [CP000512]
4069843
4069768
-
Thr
TGT
[Ensembl]
¡û
>WENV180283531
OBID01000509
[OBID] metagenome; sludge
12728
12653
-
Thr
TGT
[ENA]
¢þ
>W141278753
JAFU01000001
Betaproteobacteria
Acidovorax sp. JHL-3 [JAFU]
1544155
1544230
+
Thr
TGT
[ENA]
¡û
>WENV170706632
LNAP01004930
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
1273
1348
+
Thr
TGT
[ENA]
¢þ
>WENV170706809
LNAP01007064
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
5535
5610
+
Thr
TGT
[ENA]
¢þ
>WENV170708035
LNAP01045339
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
1277
1352
+
Thr
TGT
[ENA]
¢þ
>C181088996
CP023687
Betaproteobacteria
Paracidovorax citrulli KACC17005 [CP023687]
1452601
1452526
-
Thr
TGT
-
¡û
>W09106096
AASX01000020
Betaproteobacteria
Paracidovorax citrulli subsp. citrulli AAC00-1 [AASX]
31844
31769
-
Thr
TGT
[ENA]
¡û
>W09133904
ACQT01000019
Betaproteobacteria
Acidovorax delafieldii 2AN [ACQT]
32249
32174
-
Thr
TGT
[ENA]
¡û
>C191063806
CP029373
Betaproteobacteria
Paracidovorax citrulli M6 [CP029373]
816111
816036
-
Thr
TGT
-
¡û
>W141561756
JHYS01000006
Betaproteobacteria
Simplicispira psychrophila DSM 11588 [JHYS]
28448
28523
+
Thr
TGT
[ENA]
¡û
>W141701627
JMKU01000009
Betaproteobacteria
Paracidovorax oryzae ATCC 19882 [JMKU]
85441
85516
+
Thr
TGT
[ENA]
¡û
>SRA1002169
SRR001308.282555
Metagenomic characterization of a wastewater treatment plant (SRP000180)
159
234
+
Thr
TGT
[SRA]
>SRA1003348
SRR002326.405318
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
120
195
+
Thr
TGT
[SRA]
>W1810573165
QEKN01000001
Betaproteobacteria
Paracidovorax citrulli AAC00-1 #5684 [QEKN]
1049466
1049391
-
Thr
TGT
[ENA]
¡û
>W1810577608
QEOJ01000003
Betaproteobacteria
Rhodoferax sp. YR267 [QEOJ]
227489
227564
+
Thr
TGT
[ENA]
¡û
>W1810697067
QLTU01000002
Betaproteobacteria
Acidovorax defluvii DSM 12644 [QLTU]
87240
87165
-
Thr
TGT
[ENA]
¡û
>W1810750675
QOZT01000005
Betaproteobacteria
Acidovorax sp. BoFeN1 [QOZT]
7508
7433
-
Thr
TGT
[ENA]
¡û
>W1810885117
QUNC01000001
Betaproteobacteria
Paracidovorax citrulli AAC00-1 #5596 [QUNC]
484634
484709
+
Thr
TGT
[ENA]
¡û
>W10110555
ADCB01000026
Betaproteobacteria
Paracidovorax avenae subsp. avenae ATCC 19860 [ADCB]
10879
10954
+
Thr
TGT
[ENA]
¡û
>C11100160
CP002521
Betaproteobacteria
Paracidovorax avenae ATCC 19860 [CP002521]
4085627
4085552
-
Thr
TGT
[Ensembl]
¡û
>W11112992
ADCB01000026
Betaproteobacteria
Paracidovorax avenae subsp. avenae ATCC 19860 [ADCB]
10879
10954
+
Thr
TGT
[ENA]
¡û
>W1511503082
JXDJ01000026
Betaproteobacteria
Paracidovorax citrulli tw6 [JXDJ]
96033
96108
+
Thr
TGT
[ENA]
¡û
>W1511527418
JYHM01000016
Betaproteobacteria
Paracidovorax citrulli pslbtw65 [JYHM]
67138
67063
-
Thr
TGT
[ENA]
¡û
>W11170767
AFPT01000097
Betaproteobacteria
Paracidovorax oryzae subsp. avenae RS-1 [AFPT]
74756
74681
-
Thr
TGT
[ENA]
¡û
>W1610686291
LKUW01000048
Betaproteobacteria
Paracidovorax citrulli [LKUW]
27704
27779
+
Thr
TGT
[ENA]
¡û
>W1610738339
LMOV01000025
Betaproteobacteria
Acidovorax sp. Leaf160 [LMOV]
177037
176962
-
Thr
TGT
[ENA]
¡û
>W1710519737
FNEY01000030
Betaproteobacteria
Paracidovorax citrulli [FNEY]
28092
28167
+
Thr
TGT
[ENA]
¡û
>W1710524816
FNJA01000003
Betaproteobacteria
Rhodoferax sp. OV413 OV413 [FNJA]
344046
343971
-
Thr
TGT
[ENA]
¡û
>W1710525292
FNJL01000002
Betaproteobacteria
Paracidovorax cattleyae [FNJL]
92002
92077
+
Thr
TGT
[ENA]
¡û
>W1710532530
FNQJ01000027
Betaproteobacteria
Acidovorax soli [FNQJ]
717
642
-
Thr
TGT
[ENA]
¡û
>W1710559431
FOMQ01000002
Betaproteobacteria
Paracidovorax konjaci [FOMQ]
426856
426931
+
Thr
TGT
[ENA]
¡û
>W1710561151
FONX01000025
Betaproteobacteria
Paracidovorax wautersii [FONX]
16438
16513
+
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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