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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.282980 (46 seq.)
>W1710858232
LMAU01000004
Alphaproteobacteria
Tsuneonella troitsensis [LMAU]
81514
81589
+
Thr
TGT
[ENA]
¡û
>W1710867410
LMIG01000003
Alphaproteobacteria
Sphingopyxis sp. Root214 [LMIG]
492645
492570
-
Thr
TGT
[ENA]
¡û
>W1710882976
LMVG01000001
Alphaproteobacteria
Pelagerythrobacter marensis [LMVG]
1046122
1046197
+
Thr
TGT
[ENA]
¡û
>W1710912961
LNSB01000013
Alphaproteobacteria
Sphingopyxis sp. HIX [LNSB]
14031
14106
+
Thr
TGT
[ENA]
¡û
>W1710912994
LNSC01000001
Alphaproteobacteria
Sphingopyxis sp. HXXIV [LNSC]
14018
14093
+
Thr
TGT
[ENA]
¡û
>W1711175161
LWEO01000206
Alphaproteobacteria
Erythrobacter sp. HI0020 [LWEO]
12272
12197
-
Thr
TGT
[ENA]
¡û
>W1711175521
LWEV01001335
Alphaproteobacteria
Erythrobacter sp. HI0037 [LWEV]
1878
1953
+
Thr
TGT
[ENA]
¡û
>W1711175524
LWEV01001456
Alphaproteobacteria
Erythrobacter sp. HI0037 [LWEV]
135
210
+
Thr
TGT
[ENA]
¡û
>W1711175646
LWEW01001706
Alphaproteobacteria
Erythrobacter sp. HI0038 [LWEW]
4051
3976
-
Thr
TGT
[ENA]
¡û
>W1711229459
LXYL01000011
Alphaproteobacteria
Erythrobacter sp. EhN03 [LXYL]
14990
15065
+
Thr
TGT
[ENA]
¡û
>W1711437801
MIPT01000001
Alphaproteobacteria
Sphingomonas haloaromaticamans [MIPT]
2014206
2014131
-
Thr
TGT
[ENA]
¡û
>C171128446
LT598653
Alphaproteobacteria
uncultured Sphingopyxis sp. [LT598653]
617469
617394
-
Thr
TGT
-
¡û
>WENV183725799
PJQF01018142
[PJQF] biofilm metagenome; biomolecule (vanillin) treated reverse osmosis membrane biofilm
165
90
-
Thr
TGT
[ENA]
¢þ
>WENV170193112
CEPH01013085
[CEPH] marine metagenome genome assembly TARA_048_SRF_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2233
2158
-
Thr
TGT
[ENA]
¢þ
>WENV170202080
CEPQ01113118
[CEPQ] marine metagenome genome assembly TARA_038_MES_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
683
758
+
Thr
TGT
[ENA]
¢þ
>WENV170264959
CERD01092849
[CERD] marine metagenome genome assembly TARA_070_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
470
395
-
Thr
TGT
[ENA]
¢þ
>WENV170366768
CETO01101171
[CETO] marine metagenome genome assembly TARA_122_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
102
177
+
Thr
TGT
[ENA]
¢þ
>WENV170765388
LWDU01037346
[LWDU] hydrothermal vent metagenome; deep sea hydrothermal plume seawater
161750
161675
-
Thr
TGT
[ENA]
¢þ
>WENV170821524
MDSY01023491
[MDSY] marine metagenome; seawater
1681
1756
+
Thr
TGT
[ENA]
¢þ
>WENV170963269
MRWG01000070
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
2794
2869
+
Thr
TGT
[ENA]
¢þ
>WENV170964236
MRWG01005636
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
3868
3793
-
Thr
TGT
[ENA]
¢þ
>WENV170964677
MRWG01030410
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
76
1
-
Thr
TGT
[ENA]
¢þ
>C181072795
CP022889
Alphaproteobacteria
Tsuneonella mangrovi C9-11 [CP022889]
798427
798502
+
Thr
TGT
-
¡û
>C191007614
AP019389
Alphaproteobacteria
Qipengyuania flava KJ5 [AP019389]
2429205
2429280
+
Thr
TGT
-
¡û
>C191155780
CP037948
Alphaproteobacteria
Qipengyuania sediminis CGMCC 1.12928 [CP037948]
305013
304939
-
Thr
TGT
-
¡û
>W1910199215
FBVV01000004
Alphaproteobacteria
Sphingobium sp. Z007 [FBVV]
53389
53464
+
Thr
TGT
[ENA]
¡û
>W1911737889
QTTB01000004
Alphaproteobacteria
Tsuneonella troitsensis KMM 6042 [QTTB]
1481994
1482069
+
Thr
TGT
[ENA]
¡û
>W1911823521
QZVQ01000008
Alphaproteobacteria
Croceibacterium ferulae SX2RGS8 [QZVQ]
182029
182104
+
Thr
TGT
[ENA]
¡û
>W1810239595
PPSM01000005
Alphaproteobacteria
Novosphingobium sp. HII-3 [PPSM]
29806
29881
+
Thr
TGT
[ENA]
¡û
>C151086716
CP011805
Alphaproteobacteria
Pelagerythrobacter marensis KCTC 22370 [CP011805]
1324727
1324802
+
Thr
TGT
[Ensembl]
¡û
>C161093693
CP016033
Alphaproteobacteria
Erythrobacter neustonensis DSM 9434 [CP016033]
1987550
1987475
-
Thr
TGT
[Ensembl]
¡û
>W1610550579
JXQC01000003
Alphaproteobacteria
Erythrobacter sp. SG61-1L [JXQC]
3657027
3657102
+
Thr
TGT
[ENA]
¡û
>W1610550581
JXQC01000003
Alphaproteobacteria
Erythrobacter sp. SG61-1L [JXQC]
3545422
3545347
-
Thr
TGT
[ENA]
¡û
>W1610720578
LMAU01000004
Alphaproteobacteria
Tsuneonella troitsensis [LMAU]
81514
81589
+
Thr
TGT
[ENA]
¡û
>W1610729756
LMIG01000003
Alphaproteobacteria
Sphingopyxis sp. Root214 [LMIG]
492645
492570
-
Thr
TGT
[ENA]
¡û
>W1610744902
LMVG01000001
Alphaproteobacteria
Pelagerythrobacter marensis [LMVG]
1046122
1046197
+
Thr
TGT
[ENA]
¡û
>W1610771320
LNSB01000013
Alphaproteobacteria
Sphingopyxis sp. HIX [LNSB]
14031
14106
+
Thr
TGT
[ENA]
¡û
>W1610771353
LNSC01000001
Alphaproteobacteria
Sphingopyxis sp. HXXIV [LNSC]
14018
14093
+
Thr
TGT
[ENA]
¡û
>W1610983474
LWEO01000206
Alphaproteobacteria
Erythrobacter sp. HI0020 [LWEO]
12272
12197
-
Thr
TGT
[ENA]
¡û
>W1610983834
LWEV01001335
Alphaproteobacteria
Erythrobacter sp. HI0037 [LWEV]
1878
1953
+
Thr
TGT
[ENA]
¡û
>W1610983837
LWEV01001456
Alphaproteobacteria
Erythrobacter sp. HI0037 [LWEV]
135
210
+
Thr
TGT
[ENA]
¡û
>W1610983959
LWEW01001706
Alphaproteobacteria
Erythrobacter sp. HI0038 [LWEW]
4051
3976
-
Thr
TGT
[ENA]
¡û
>W1611013329
LXYL01000011
Alphaproteobacteria
Erythrobacter sp. EhN03 [LXYL]
14990
15065
+
Thr
TGT
[ENA]
¡û
>W1710562075
FOOR01000009
Alphaproteobacteria
Novosphingobium sp. CF614 [FOOR]
138051
138126
+
Thr
TGT
[ENA]
¡û
>W1710660342
JXQC01000003
Alphaproteobacteria
Erythrobacter sp. SG61-1L [JXQC]
3657027
3657102
+
Thr
TGT
[ENA]
¡û
>W1710660344
JXQC01000003
Alphaproteobacteria
Erythrobacter sp. SG61-1L [JXQC]
3545422
3545347
-
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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