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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.283018 (111 seq.)
>W1710808909
LKDZ01000004
Betaproteobacteria
Variovorax boronicumulans [LKDZ]
94925
94850
-
Lys
TTT
[ENA]
¡û
>W1710821664
LKTU01000073
Betaproteobacteria
Variovorax paradoxus [LKTU]
5430
5355
-
Lys
TTT
[ENA]
¡û
>W1710821701
LKTV01000069
Betaproteobacteria
Variovorax paradoxus [LKTV]
5430
5355
-
Lys
TTT
[ENA]
¡û
>W1710821734
LKTW01000040
Betaproteobacteria
Variovorax paradoxus [LKTW]
5430
5355
-
Lys
TTT
[ENA]
¡û
>W1710821797
LKTX01000063
Betaproteobacteria
Variovorax paradoxus [LKTX]
5430
5355
-
Lys
TTT
[ENA]
¡û
>W1710821873
LKTY01000237
Betaproteobacteria
Variovorax paradoxus [LKTY]
5430
5355
-
Lys
TTT
[ENA]
¡û
>W1710821922
LKTZ01000218
Betaproteobacteria
Variovorax paradoxus [LKTZ]
5430
5355
-
Lys
TTT
[ENA]
¡û
>W1710860124
LMCQ01000003
Betaproteobacteria
Variovorax sp. Root318D1 [LMCQ]
169504
169579
+
Lys
TTT
[ENA]
¡û
>W1710861765
LMDW01000016
Betaproteobacteria
Variovorax sp. Root411 [LMDW]
255346
255421
+
Lys
TTT
[ENA]
¡û
>W1710862507
LMEK01000027
Betaproteobacteria
Variovorax sp. Root434 [LMEK]
18429
18354
-
Lys
TTT
[ENA]
¡û
>W1710863085
LMEV01000017
Betaproteobacteria
Variovorax sp. Root473 [LMEV]
1274090
1274165
+
Lys
TTT
[ENA]
¡û
>W1710868469
LMJC01000008
Betaproteobacteria
Acidovorax sp. Root267 [LMJC]
33534
33609
+
Lys
TTT
[ENA]
¡û
>W1710868703
LMJH01000001
Betaproteobacteria
Acidovorax sp. Root275 [LMJH]
1539532
1539457
-
Lys
TTT
[ENA]
¡û
>W1710872593
LMMC01000007
Betaproteobacteria
Acidovorax sp. Leaf84 [LMMC]
27894
27969
+
Lys
TTT
[ENA]
¡û
>W1710953589
LOWO01000011
Betaproteobacteria
Burkholderia vietnamiensis [LOWO]
110346
110271
-
Lys
TTT
[ENA]
¡û
>W1711123819
LUJJ01000012
Betaproteobacteria
Variovorax boronicumulans [LUJJ]
112059
111984
-
Lys
TTT
[ENA]
¡û
>W1711143372
LVHG01000077
Betaproteobacteria
Variovorax paradoxus [LVHG]
20221
20296
+
Lys
TTT
[ENA]
¡û
>W1711386503
MEFM01000022
Betaproteobacteria
Variovorax sp. SCN 67-85 [MEFM]
80832
80757
-
Lys
TTT
[ENA]
¡û
>W1711387495
MEGR01000062
Betaproteobacteria
Variovorax sp. SCN 67-20 [MEGR]
34069
34144
+
Lys
TTT
[ENA]
¡û
>W1711506628
MKWO01000021
Betaproteobacteria
Variovorax sp. 67-131 [MKWO]
467614
467689
+
Lys
TTT
[ENA]
¡û
>W131174637
ARIP01000062
Betaproteobacteria
Variovorax paradoxus 4MFCol3.1 [ARIP]
139134
139059
-
Lys
TTT
[ENA]
¡û
>W131180365
ARNA01000050
Betaproteobacteria
Variovorax paradoxus 110B [ARNA]
525669
525594
-
Lys
TTT
[ENA]
¡û
>WENV012970
AACY020355094
Marine microbial communities from Global Ocean Sampling (GOS)
5995
5920
-
Lys
TTT
[ENA]
>WENV180099419
NMRC01003001
[NMRC] plant metagenome; fluid collected inside the plant's pitcher
632
557
-
Lys
TTT
[ENA]
¢þ
>WENV181167269
OEIU01017032
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
190
115
-
Lys
TTT
[ENA]
¢þ
>WENV181170390
OEIV010043659
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
621
696
+
Lys
TTT
[ENA]
¢þ
>WENV181414830
OGCL01001563
[OGCL] hot springs metagenome; Hot spring water
435
360
-
Lys
TTT
[ENA]
¢þ
>W141170142
AXXF01000012
Betaproteobacteria
Variovorax sp. JGI 0001014-I04 [AXXF]
817
742
-
Lys
TTT
[ENA]
¡û
>W141170150
AXXG01000005
Betaproteobacteria
Variovorax sp. JGI 0001016-M12 [AXXG]
83118
83043
-
Lys
TTT
[ENA]
¡û
>WENV183735291
PJUA01008587
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
707
632
-
Lys
TTT
[ENA]
¢þ
>WENV183735590
PJUB01000108
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
10234
10159
-
Lys
TTT
[ENA]
¢þ
>WENV183736285
PJUC01000415
[PJUC] soil metagenome; Soil enriched on filter paper
14093
14168
+
Lys
TTT
[ENA]
¢þ
>WENV183741529
PJUG01000046
[PJUG] feces metagenome; Chicken feces (2) enriched on wood chips: beechwood xylan treatment
50084
50159
+
Lys
TTT
[ENA]
¢þ
>WENV183742020
PJUH01000071
[PJUH] feces metagenome; Chicken feces (2) enriched on wood chips: alkali lignin treatment
54996
55071
+
Lys
TTT
[ENA]
¢þ
>WENV170559463
CXWL01124558
[CXWL] groundwater metagenome; biofilm material
8172
8097
-
Lys
TTT
[ENA]
¢þ
>WENV170650049
JRYD01006827
[JRYD] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 2 ppm DO
687
762
+
Lys
TTT
[ENA]
¢þ
>WENV170684269
LFRM01029960
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
696
771
+
Lys
TTT
[ENA]
¢þ
>WENV171003337
NNBT01005264
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
5758
5683
-
Lys
TTT
[ENA]
¢þ
>WENV171003615
NNBU01000782
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
22395
22470
+
Lys
TTT
[ENA]
¢þ
>WENV171003785
NNBV01000771
[NNBV] plant metagenome; symbiotic tissue sample KVS11
44562
44637
+
Lys
TTT
[ENA]
¢þ
>C181078494
CP023284
Betaproteobacteria
Variovorax boronicumulans J1 [CP023284]
3959989
3959914
-
Lys
TTT
-
¡û
>C181159413
CP027773
Betaproteobacteria
Variovorax sp. PMC12 [CP027773, CP027774]
1333956
1333881
-
Lys
TTT
-
¡û
>C191099878
CP033069
Betaproteobacteria
Acidovorax sp. 1608163 [CP033069]
2033799
2033874
+
Lys
TTT
-
¡û
>W141558083
JHVQ01000007
Betaproteobacteria
Variovorax sp. URHB0020 [JHVQ]
163910
163985
+
Lys
TTT
[ENA]
¡û
>W09119924
ACEE01000008
Betaproteobacteria
Variovorax paradoxus S110 [ACEE]
100239
100164
-
Lys
TTT
[ENA]
¡û
>W1910179199
BJHU01000030
Betaproteobacteria
Acidovorax sp. NB1 [BJHU]
202469
202394
-
Lys
TTT
[ENA]
¡û
>C141002574
CP003911
Betaproteobacteria
Variovorax paradoxus B4 [CP003911, CP003912]
3017536
3017461
-
Lys
TTT
[Ensembl]
¡û
>W1910500913
FYAI01000004
Betaproteobacteria
Paraburkholderia fungorum [FYAI]
53135
53060
-
Lys
TTT
[ENA]
¡û
>C09111101
CP001635
Betaproteobacteria
Variovorax paradoxus [CP001635]
2839014
2839089
+
Lys
TTT
[Ensembl]
¡û
>W1910792828
MRCN01000008
Betaproteobacteria
Variovorax boronicumulans ACN3 [MRCN]
199472
199397
-
Lys
TTT
[ENA]
¡û
>W1911496712
OCMW01000001
Betaproteobacteria
Variovorax sp. YR752 [OCMW]
4122688
4122613
-
Lys
TTT
[ENA]
¡û
>W1911647336
QAJK01000046
Betaproteobacteria
Variovorax sp. KBW07 [QAJK]
139519
139444
-
Lys
TTT
[ENA]
¡û
>W1911775327
QXMN01000027
Betaproteobacteria
Acidovorax cavernicola 1011MAR4D40.2 [QXMN]
11985
11910
-
Lys
TTT
[ENA]
¡û
>W1810071640
PEEV01000001
Betaproteobacteria
Acidovorax sp. 56 [PEEV]
1177843
1177768
-
Lys
TTT
[ENA]
¡û
>W1810072255
PEFF01000001
Betaproteobacteria
Variovorax sp. 54 [PEFF]
200183
200108
-
Lys
TTT
[ENA]
¡û
>W1810072505
PEFJ01000001
Betaproteobacteria
Acidovorax sp. 62 [PEFJ]
1897209
1897134
-
Lys
TTT
[ENA]
¡û
>W1810192724
PKMT01000003
Betaproteobacteria
Variovorax sp. RO1 [PKMT]
501574
501499
-
Lys
TTT
[ENA]
¡û
>W1810200815
PNYA01000024
Betaproteobacteria
Trinickia dabaoshanensis GIMN1.004 [PNYA]
110596
110671
+
Lys
TTT
[ENA]
¡û
>W1810354139
PVHA01000068
Betaproteobacteria
Burkholderia multivorans AU27706 [PVHA]
2133
2058
-
Lys
TTT
[ENA]
¡û
>W1810368218
PVZM01000007
Betaproteobacteria
Paraburkholderia fungorum LMG 28183 [PVZM]
37991
37916
-
Lys
TTT
[ENA]
¡û
>W1810486645
QAYA01000001
Betaproteobacteria
Variovorax sp. GV040 [QAYA]
484938
485013
+
Lys
TTT
[ENA]
¡û
>W1810577500
QEOH01000001
Betaproteobacteria
Variovorax sp. GV014 [QEOH]
588625
588700
+
Lys
TTT
[ENA]
¡û
>W1810672516
QJTM01000001
Betaproteobacteria
Variovorax sp. GV035 [QJTM]
484938
485013
+
Lys
TTT
[ENA]
¡û
>W1810676084
QKLT01000001
Betaproteobacteria
Variovorax sp. GV042 [QKLT]
484938
485013
+
Lys
TTT
[ENA]
¡û
>W1810682453
QKUE01000001
Betaproteobacteria
Variovorax sp. GV004 [QKUE]
484938
485013
+
Lys
TTT
[ENA]
¡û
>W1510766091
JANU01000031
Betaproteobacteria
Caenimonas sp. SL110 [JANU]
117304
117229
-
Lys
TTT
[ENA]
¡û
>W1511352972
JROV01001046
Betaproteobacteria
Variovorax paradoxus ZNC0006 [JROV]
7317
7242
-
Lys
TTT
[ENA]
¡û
>C11123579
CP002417
Betaproteobacteria
Variovorax paradoxus EPS [CP002417]
2933129
2933204
+
Lys
TTT
[Ensembl]
¡û
>W1511508929
JXQQ01000033
Betaproteobacteria
Variovorax paradoxus MEDvA23 [JXQQ]
87102
87177
+
Lys
TTT
[ENA]
¡û
>W1511555003
JZWI01000018
Betaproteobacteria
Variovorax paradoxus TBEA6 [JZWI]
16171
16246
+
Lys
TTT
[ENA]
¡û
>W11156562
AFBG01000022
Betaproteobacteria
Acidovorax radicis N35 [AFBG]
84007
83932
-
Lys
TTT
[ENA]
¡û
>W11156604
AFBH01000023
Betaproteobacteria
Acidovorax radicis N35v [AFBH]
260688
260763
+
Lys
TTT
[ENA]
¡û
>W1610072140
BCUS01000005
Betaproteobacteria
Variovorax boronicumulans NBRC 103145 [BCUS]
60020
60095
+
Lys
TTT
[ENA]
¡û
>W1610072230
BCUT01000008
Betaproteobacteria
Variovorax paradoxus NBRC 15149 [BCUT]
135571
135496
-
Lys
TTT
[ENA]
¡û
>W1610072234
BCUU01000001
Betaproteobacteria
Variovorax soli NBRC 106424 [BCUU]
76430
76355
-
Lys
TTT
[ENA]
¡û
>W121084947
AKIW01000012
Betaproteobacteria
Variovorax sp. CF313 [AKIW]
6527
6452
-
Lys
TTT
[ENA]
¡û
>W1610685626
LKTU01000073
Betaproteobacteria
Variovorax paradoxus [LKTU]
5430
5355
-
Lys
TTT
[ENA]
¡û
>W1610685663
LKTV01000069
Betaproteobacteria
Variovorax paradoxus [LKTV]
5430
5355
-
Lys
TTT
[ENA]
¡û
>W1610685696
LKTW01000040
Betaproteobacteria
Variovorax paradoxus [LKTW]
5430
5355
-
Lys
TTT
[ENA]
¡û
>W1610685759
LKTX01000063
Betaproteobacteria
Variovorax paradoxus [LKTX]
5430
5355
-
Lys
TTT
[ENA]
¡û
>W1610685835
LKTY01000237
Betaproteobacteria
Variovorax paradoxus [LKTY]
5430
5355
-
Lys
TTT
[ENA]
¡û
>W1610685884
LKTZ01000218
Betaproteobacteria
Variovorax paradoxus [LKTZ]
5430
5355
-
Lys
TTT
[ENA]
¡û
>W1610722470
LMCQ01000003
Betaproteobacteria
Variovorax sp. Root318D1 [LMCQ]
169504
169579
+
Lys
TTT
[ENA]
¡û
>W1610724111
LMDW01000016
Betaproteobacteria
Variovorax sp. Root411 [LMDW]
255346
255421
+
Lys
TTT
[ENA]
¡û
>W1610724853
LMEK01000027
Betaproteobacteria
Variovorax sp. Root434 [LMEK]
18429
18354
-
Lys
TTT
[ENA]
¡û
>W1610725431
LMEV01000017
Betaproteobacteria
Variovorax sp. Root473 [LMEV]
1274090
1274165
+
Lys
TTT
[ENA]
¡û
>W1610730815
LMJC01000008
Betaproteobacteria
Acidovorax sp. Root267 [LMJC]
33534
33609
+
Lys
TTT
[ENA]
¡û
>W1610731049
LMJH01000001
Betaproteobacteria
Acidovorax sp. Root275 [LMJH]
1539532
1539457
-
Lys
TTT
[ENA]
¡û
>W1610734939
LMMC01000007
Betaproteobacteria
Acidovorax sp. Leaf84 [LMMC]
27894
27969
+
Lys
TTT
[ENA]
¡û
>W1610809699
LOWO01000011
Betaproteobacteria
Burkholderia vietnamiensis [LOWO]
110346
110271
-
Lys
TTT
[ENA]
¡û
>W1610954380
LVHG01000077
Betaproteobacteria
Variovorax paradoxus [LVHG]
20221
20296
+
Lys
TTT
[ENA]
¡û
>W1710069342
BCUS01000005
Betaproteobacteria
Variovorax boronicumulans NBRC 103145 [BCUS]
60020
60095
+
Lys
TTT
[ENA]
¡û
>W1710069432
BCUT01000008
Betaproteobacteria
Variovorax paradoxus NBRC 15149 [BCUT]
135571
135496
-
Lys
TTT
[ENA]
¡û
>W1710069436
BCUU01000001
Betaproteobacteria
Variovorax soli NBRC 106424 [BCUU]
76430
76355
-
Lys
TTT
[ENA]
¡û
>W1710506174
FMUJ01000001
Betaproteobacteria
Variovorax sp. EL159 [FMUJ]
1274207
1274282
+
Lys
TTT
[ENA]
¡û
>W1710517964
FNDR01000014
Betaproteobacteria
Variovorax sp. OV700 [FNDR]
114081
114006
-
Lys
TTT
[ENA]
¡û
>W1710530022
FNOL01000005
Betaproteobacteria
Variovorax sp. YR634 [FNOL]
228334
228409
+
Lys
TTT
[ENA]
¡û
>W1710531356
FNPM01000002
Betaproteobacteria
Variovorax sp. YR266 [FNPM]
526344
526269
-
Lys
TTT
[ENA]
¡û
>W1710534013
FNRO01000001
Betaproteobacteria
Variovorax sp. YR216 [FNRO]
400883
400808
-
Lys
TTT
[ENA]
¡û
>W1710538137
FNUI01000006
Betaproteobacteria
Variovorax sp. NFACC28 [FNUI]
236105
236180
+
Lys
TTT
[ENA]
¡û
>W1710539556
FNVM01000006
Betaproteobacteria
Variovorax sp. NFACC29 [FNVM]
257339
257264
-
Lys
TTT
[ENA]
¡û
>W1710542706
FNZJ01000003
Betaproteobacteria
Variovorax sp. OK202 [FNZJ]
234572
234647
+
Lys
TTT
[ENA]
¡û
>W1710545280
FOBJ01000001
Betaproteobacteria
Variovorax sp. YR750 [FOBJ]
517230
517155
-
Lys
TTT
[ENA]
¡û
>W1710554286
FOII01000001
Betaproteobacteria
Variovorax sp. OV084 [FOII]
1052427
1052352
-
Lys
TTT
[ENA]
¡û
>W1710557136
FOKS01000006
Betaproteobacteria
Variovorax sp. NFACC26 [FOKS]
236055
236130
+
Lys
TTT
[ENA]
¡û
>W1710558145
FOLP01000003
Betaproteobacteria
Variovorax sp. OK212 [FOLP]
234518
234593
+
Lys
TTT
[ENA]
¡û
>W1710562248
FOOV01000003
Betaproteobacteria
Variovorax sp. NFACC27 [FOOV]
257341
257266
-
Lys
TTT
[ENA]
¡û
>W1710569256
FOUG01000005
Betaproteobacteria
Variovorax sp. OV329 [FOUG]
193806
193731
-
Lys
TTT
[ENA]
¡û
>W1710571856
FOWG01000002
Betaproteobacteria
Variovorax sp. PDC80 [FOWG]
251644
251719
+
Lys
TTT
[ENA]
¡û
>W1710572109
FOWL01000001
Betaproteobacteria
Variovorax sp. OK605 [FOWL]
541214
541139
-
Lys
TTT
[ENA]
¡û
>W1710573274
FOXJ01000001
Betaproteobacteria
Variovorax sp. 770b2 [FOXJ]
1321779
1321854
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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