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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.283025 (89 seq.)
>W1710863272
LMEZ01000002
Actinomycetota
Mycobacterium sp. Root135 [LMEZ]
65683
65610
-
Arg
CCT
[ENA]
¡û
>W1710868370
LMJA01000022
Actinomycetota
Mycobacterium sp. Root265 [LMJA]
259336
259411
+
Arg
CCT
[ENA]
¡û
>W1711004425
LQIT01000003
Actinomycetota
Mycobacterium sp. GA-2829 [LQIT]
73651
73726
+
Arg
CCT
[ENA]
¡û
>W1711006821
LQOQ01000041
Actinomycetota
Mycolicibacterium confluentis [LQOQ]
216473
216546
+
Arg
CCT
[ENA]
¡û
>W1711007174
LQOY01000111
Actinomycetota
Mycobacterium gordonae [LQOY]
21157
21230
+
Arg
CCT
[ENA]
¡û
>W1711007943
LQPO01000035
Actinomycetota
Mycobacterium parmense [LQPO]
170778
170851
+
Arg
CCT
[ENA]
¡û
>W1711007979
LQPP01000020
Actinomycetota
Mycolicibacterium peregrinum [LQPP]
5311
5384
+
Arg
CCT
[ENA]
¡û
>W1711173261
LWCS01000023
Actinomycetota
Mycolicibacterium iranicum [LWCS]
62930
62857
-
Arg
CCT
[ENA]
¡û
>W1711276024
LZHU01000044
Actinomycetota
Mycolicibacterium conceptionense [LZHU]
75475
75548
+
Arg
CCT
[ENA]
¡û
>W1711277251
LZIU01000014
Actinomycetota
Mycolicibacter heraklionensis heraklionense [LZIU]
46776
46851
+
Arg
CCT
[ENA]
¡û
>W1711278410
LZJS01000128
Actinomycetota
Mycobacterium colombiense [LZJS]
184467
184540
+
Arg
CCT
[ENA]
¡û
>W1711278505
LZJU01000157
Actinomycetota
Mycobacterium mantenii E152 [LZJU]
308
235
-
Arg
CCT
[ENA]
¡û
>W1711278564
LZJV01000133
Actinomycetota
Mycobacterium mantenii E3078 [LZJV]
63730
63803
+
Arg
CCT
[ENA]
¡û
>W1711278985
LZKE01000247
Actinomycetota
Mycobacterium sp. E2327 [LZKE]
1407
1480
+
Arg
CCT
[ENA]
¡û
>W1711279379
LZKN01000043
Actinomycetota
Mycolicibacterium fortuitum [LZKN]
137169
137242
+
Arg
CCT
[ENA]
¡û
>W1711285482
LZSI01000026
Actinomycetota
Mycolicibacterium fortuitum [LZSI]
7282
7355
+
Arg
CCT
[ENA]
¡û
>W1711285990
LZSS01000055
Actinomycetota
Mycolicibacterium fortuitum [LZSS]
209334
209261
-
Arg
CCT
[ENA]
¡û
>W1711286268
LZSY01000100
Actinomycetota
Mycolicibacterium peregrinum [LZSY]
2875
2948
+
Arg
CCT
[ENA]
¡û
>W1711324846
MBDY01000082
Actinomycetota
Mycolicibacterium porcinum vulneris [MBDY]
25720
25647
-
Arg
CCT
[ENA]
¡û
>W1711325142
MBEF01000046
Actinomycetota
Mycolicibacterium vulneris [MBEF]
189069
189142
+
Arg
CCT
[ENA]
¡û
>W1711325376
MBEK01000027
Actinomycetota
Mycolicibacterium fortuitum [MBEK]
110333
110260
-
Arg
CCT
[ENA]
¡û
>W1711325559
MBEN01000145
Actinomycetota
Mycobacterium colombiense [MBEN]
52294
52221
-
Arg
CCT
[ENA]
¡û
>W1711325758
MBES01000008
Actinomycetota
Mycobacterium sp. IS-1264 [MBES]
4014
4089
+
Arg
CCT
[ENA]
¡û
>W1711327126
MBGF01000133
Actinomycetota
Mycolicibacterium conceptionense [MBGF]
90230
90157
-
Arg
CCT
[ENA]
¡û
>W131092058
AOHQ01000133
Actinomycetota
Mycobacterium sp. VKM Ac-1816D [AOHQ]
148
75
-
Arg
CCT
[ENA]
¡û
>W131111993
APMY01000027
Actinomycetota
Rhodococcus rhodnii LMG 5362 [APMY]
32429
32354
-
Arg
CCT
[ENA]
¡û
>W1711772846
MVHS01000026
Actinomycetota
Mycolicibacterium insubricum [MVHS]
24279
24354
+
Arg
CCT
[ENA]
¡û
>W1711773031
MVHW01000022
Actinomycetota
Mycobacterium mantenii [MVHW]
309
234
-
Arg
CCT
[ENA]
¡û
>W1711783467
MVOC01000032
Actinomycetota
Mycobacterium sp. AT1 [MVOC]
25007
25082
+
Arg
CCT
[ENA]
¡û
>W1711966603
NCXM01000009
Actinomycetota
Mycolicibacterium vulneris [NCXM]
159
86
-
Arg
CCT
[ENA]
¡û
>WENV180098295
MTBK01237760
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
3202
3129
-
Arg
CCT
[ENA]
¢þ
>WENV180304395
OBJI01021757
[OBJI] soil metagenome; soil
354
429
+
Arg
CCT
[ENA]
¢þ
>WENV180344659
OBLL01096219
[OBLL] soil metagenome; soil
98
25
-
Arg
CCT
[ENA]
¢þ
>WENV180639122
OCRI01136978
[OCRI] marine metagenome; Sterile flask
380
307
-
Arg
CCT
[ENA]
¢þ
>W141090058
AUWS01000055
Actinomycetota
Mycobacterium sp. UM_WWY [AUWS]
102
29
-
Arg
CCT
[ENA]
¡û
>WENV181172679
OEIV010913193
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
73
1
-
Arg
CCT
[ENA]
¢þ
>W141261834
CCBB010000001
Actinomycetota
Mycolicibacterium cosmeticum [CCBB]
1987099
1987172
+
Arg
CCT
[ENA]
¡û
>C181002965
AP017624
Actinomycetota
Mycobacterium ulcerans subsp. shinshuense ATCC 33728 [AP017624]
885819
885744
-
Arg
CCT
-
¡û
>C181122675
CP025779
Actinomycetota
Mycobacterium marinum 1218R [CP025779]
5457272
5457347
+
Arg
CCT
-
¡û
>C191002535
AP018496
Actinomycetota
Mycobacterium marinum ATCC 927 [AP018496]
5433951
5434026
+
Arg
CCT
-
¡û
>C191208554
LR134355
Actinomycetota
Mycolicibacterium chitae NCTC10485 [LR134355]
827122
827048
-
Arg
CCT
-
¡û
>C191208578
LR134356
Actinomycetota
Mycolicibacterium aurum NCTC10437 [LR134356]
4909717
4909790
+
Arg
CCT
-
¡û
>W141564547
JIAW01000003
Actinomycetota
Mycobacterium sp. URHB0044 [JIAW]
11326
11399
+
Arg
CCT
[ENA]
¡û
>W09105289
AAPF01000001
Actinomycetota
Mycolicibacterium vanbaalenii PYR-1 [AAPF]
217705
217778
+
Arg
CCT
[ENA]
¡û
>W141817519
JQKU01000001
Actinomycetota
Mycobacterium sp. UNC280MFTsu5.1 [JQKU]
399084
399011
-
Arg
CCT
[ENA]
¡û
>W1910401394
FUWC01000001
Actinomycetota
Mycolicibacterium boenickei CIP107829 [FUWC]
2712885
2712812
-
Arg
CCT
[ENA]
¡û
>W1911141544
NOZR01000001
Actinomycetota
Mycolicibacterium sphagni ATCC 33027 [NOZR]
370609
370536
-
Arg
CCT
[ENA]
¡û
>W1911385713
NVQE01000007
Actinomycetota
Mycobacterium neglectum CECT 8778 [NVQE]
80611
80684
+
Arg
CCT
[ENA]
¡û
>W1810052651
PDCO01000015
Actinomycetota
Mycolicibacterium boenickei CCUG47580 [PDCO]
112583
112510
-
Arg
CCT
[ENA]
¡û
>W1810057174
PDHO01000023
Actinomycetota
Mycobacterium sp. ENV421 [PDHO]
69862
69935
+
Arg
CCT
[ENA]
¡û
>W1810338889
PUTX01000920
Actinomycetota
Mycobacterium sp. ITM-2016-00316 [PUTX]
58
133
+
Arg
CCT
[ENA]
¡û
>W1810346446
PVBO01018925
Actinomycetota
Mycobacterium sp. ITM-2017-0098 [PVBO]
332
405
+
Arg
CCT
[ENA]
¡û
>W1510649849
CVQQ01000008
Actinomycetota
Mycolicibacterium aurum NCTC 10437 [CVQQ]
128165
128092
-
Arg
CCT
[ENA]
¡û
>W1510651080
CVRX01000111
Actinomycetota
Mycolicibacterium fortuitum ATCC 6841 [CVRX]
100249
100322
+
Arg
CCT
[ENA]
¡û
>C11115524
CP002385
Actinomycetota
Mycolicibacterium gilvum Spyr1 [CP002385]
1234447
1234374
-
Arg
CCT
[Ensembl]
¡û
>W1511350568
JRML01000011
Actinomycetota
Mycobacterium sp. UM_Kg17 [JRML]
17644
17717
+
Arg
CCT
[ENA]
¡û
>W1511533990
JYNL01000069
Actinomycetota
Mycolicibacterium chlorophenolicum DSM 43826 [JYNL]
559192
559265
+
Arg
CCT
[ENA]
¡û
>W11181042
AGIQ01000001
Actinomycetota
Mycolicibacterium rhodesiae JS60 [AGIQ]
569372
569299
-
Arg
CCT
[ENA]
¡û
>C121004703
CP003053
Actinomycetota
Mycolicibacterium chubuense NBB4 [CP003053]
4515863
4515936
+
Arg
CCT
[Ensembl]
¡û
>C121007207
CP003169
Actinomycetota
Mycolicibacterium rhodesiae NBB3 [CP003169]
3240760
3240687
-
Arg
CCT
[Ensembl]
¡û
>C161089644
CP015596
Actinomycetota
Mycobacterium adipatum YC-RL4 [CP015596]
1771931
1771856
-
Arg
CCT
[Ensembl]
¡û
>W1610069937
BCSX01000007
Actinomycetota
Mycolicibacterium brisbanense [BCSX]
88045
88118
+
Arg
CCT
[ENA]
¡û
>W1610164992
FAXD01000010
Actinomycetota
Mycobacterium sp. M26 [FAXD]
442816
442743
-
Arg
CCT
[ENA]
¡û
>W1610725618
LMEZ01000002
Actinomycetota
Mycobacterium sp. Root135 [LMEZ]
65683
65610
-
Arg
CCT
[ENA]
¡û
>W1610730716
LMJA01000022
Actinomycetota
Mycobacterium sp. Root265 [LMJA]
259336
259411
+
Arg
CCT
[ENA]
¡û
>W1610855019
LQIT01000003
Actinomycetota
Mycobacterium sp. GA-2829 [LQIT]
73651
73726
+
Arg
CCT
[ENA]
¡û
>W1610981866
LWCS01000023
Actinomycetota
Mycolicibacterium iranicum [LWCS]
62930
62857
-
Arg
CCT
[ENA]
¡û
>W1611035309
LZHU01000044
Actinomycetota
Mycolicibacterium conceptionense [LZHU]
75475
75548
+
Arg
CCT
[ENA]
¡û
>W1611035442
LZHX01000055
Actinomycetota
Mycolicibacterium conceptionense [LZHX]
75869
75942
+
Arg
CCT
[ENA]
¡û
>W1611035644
LZIB01000029
Actinomycetota
Mycolicibacterium peregrinum [LZIB]
362189
362116
-
Arg
CCT
[ENA]
¡û
>W1611036536
LZIU01000014
Actinomycetota
Mycolicibacter heraklionensis heraklionense [LZIU]
46776
46851
+
Arg
CCT
[ENA]
¡û
>W1611037695
LZJS01000128
Actinomycetota
Mycobacterium colombiense [LZJS]
184467
184540
+
Arg
CCT
[ENA]
¡û
>W1611037790
LZJU01000157
Actinomycetota
Mycobacterium mantenii E152 [LZJU]
308
235
-
Arg
CCT
[ENA]
¡û
>W1611037849
LZJV01000133
Actinomycetota
Mycobacterium mantenii E3078 [LZJV]
63730
63803
+
Arg
CCT
[ENA]
¡û
>W1611038270
LZKE01000247
Actinomycetota
Mycobacterium sp. E2327 [LZKE]
1407
1480
+
Arg
CCT
[ENA]
¡û
>W1611038664
LZKN01000043
Actinomycetota
Mycolicibacterium fortuitum [LZKN]
137169
137242
+
Arg
CCT
[ENA]
¡û
>W1611039098
LZKW01000132
Actinomycetota
Mycobacterium colombiense [LZKW]
19024
19097
+
Arg
CCT
[ENA]
¡û
>W1611043043
LZSI01000026
Actinomycetota
Mycolicibacterium fortuitum [LZSI]
7282
7355
+
Arg
CCT
[ENA]
¡û
>W1611043551
LZSS01000055
Actinomycetota
Mycolicibacterium fortuitum [LZSS]
209334
209261
-
Arg
CCT
[ENA]
¡û
>W1611043829
LZSY01000100
Actinomycetota
Mycolicibacterium peregrinum [LZSY]
2875
2948
+
Arg
CCT
[ENA]
¡û
>W1611062695
MBDY01000082
Actinomycetota
Mycolicibacterium porcinum vulneris [MBDY]
25720
25647
-
Arg
CCT
[ENA]
¡û
>W1611062991
MBEF01000046
Actinomycetota
Mycolicibacterium vulneris [MBEF]
189069
189142
+
Arg
CCT
[ENA]
¡û
>W1710067310
BCSX01000007
Actinomycetota
Mycolicibacterium brisbanense [BCSX]
88045
88118
+
Arg
CCT
[ENA]
¡û
>W1710072161
BCXD01000032
Actinomycetota
Rhodococcus rhodnii NBRC 100604 [BCXD]
32424
32349
-
Arg
CCT
[ENA]
¡û
>W1710166608
FAXD01000010
Actinomycetota
Mycobacterium sp. M26 [FAXD]
442816
442743
-
Arg
CCT
[ENA]
¡û
>W1710505859
FMUB01000002
Actinomycetota
Mycolicibacterium fluoranthenivorans UNC267MFSha1.1M11 [FMUB]
602251
602178
-
Arg
CCT
[ENA]
¡û
>W1710512230
FMZG01000001
Actinomycetota
Mycolicibacterium neoaurum 365mftsu [FMZG]
902525
902452
-
Arg
CCT
[ENA]
¡û
>W1710619802
JMHQ01000208
Actinomycetota
Mycobacterium sp. SWH-M1 [JMHQ]
242
169
-
Arg
CCT
[ENA]
¡û
>W1710619871
JMHR01000284
Actinomycetota
Mycobacterium sp. SWH-M3 [JMHR]
15498
15425
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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