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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.283048 (52 seq.)
>W1710864903
LMGG01000001
Actinomycetota
Nocardioides sp. Root151 [LMGG]
1544050
1543977
-
Arg
ACG
[ENA]
¡û
>W1710865622
LMGV01000001
Actinomycetota
Nocardioides sp. Root614 [LMGV]
2163564
2163489
-
Arg
ACG
[ENA]
¡û
>W1710866316
LMHJ01000001
Actinomycetota
Nocardioides sp. Root682 [LMHJ]
2210015
2209940
-
Arg
ACG
[ENA]
¡û
>W1710867123
LMIA01000007
Actinomycetota
Nocardioides sp. Root190 [LMIA]
125319
125394
+
Arg
ACG
[ENA]
¡û
>W1710867745
LMIN01000009
Actinomycetota
Nocardioides sp. Root224 [LMIN]
256171
256098
-
Arg
ACG
[ENA]
¡û
>W1710874081
LMNH01000004
Actinomycetota
Nocardioides sp. Leaf285 [LMNH]
710416
710489
+
Arg
ACG
[ENA]
¡û
>W1710874889
LMNY01000003
Actinomycetota
Nocardioides sp. Leaf307 [LMNY]
6964
6889
-
Arg
ACG
[ENA]
¡û
>W1710880952
LMSR01000019
Actinomycetota
Nocardioides sp. Soil797 [LMSR]
159447
159372
-
Arg
ACG
[ENA]
¡û
>W1711127125
LUPQ01000037
Actinomycetota
Nocardioides sp. REDSEA-S43_B3 [LUPQ]
12144
12071
-
Arg
ACG
[ENA]
¡û
>W1711234531
LYCQ01000315
Actinomycetota
Nocardia farcinica [LYCQ]
51251
51178
-
Arg
ACG
[ENA]
¡û
>W1711281957
LZMP01000024
Actinomycetota
Gordonia sp. UCD-TK1 [LZMP]
101229
101156
-
Arg
ACG
[ENA]
¡û
>W1711492202
MKKE01000077
Actinomycetota
Saccharomonospora sp. CUA-673 [MKKE]
159359
159434
+
Arg
ACG
[ENA]
¡û
>W1712004140
NEGR01000002
Actinomycetota
Mycobacteroides abscessus [NEGR]
182909
182984
+
Arg
ACG
[ENA]
¡û
>W131190769
ASEP01000008
Actinomycetota
Nocardioides sp. CF8 [ASEP]
31964
32039
+
Arg
ACG
[ENA]
¡û
>W131227879
AUFN01000009
Actinomycetota
Nocardioides alkalitolerans DSM 16699 [AUFN]
510530
510605
+
Arg
ACG
[ENA]
¡û
>WENV180357664
OBNN01057186
[OBNN] marine metagenome; Coastal water
137
212
+
Arg
ACG
[ENA]
¢þ
>WENV180691071
OCZS010055670
[OCZS] soil metagenome; soil
480
553
+
Arg
ACG
[ENA]
¢þ
>WENV170733898
LULK01000332
[LULK] marine metagenome; Red Sea water column Station 169 - depth 10m
288
361
+
Arg
ACG
[ENA]
¢þ
>WENV170734845
LULK01024121
[LULK] marine metagenome; Red Sea water column Station 169 - depth 10m
443
370
-
Arg
ACG
[ENA]
¢þ
>WENV170760789
LUMU01000178
[LUMU] marine metagenome; Red Sea water column Station 192 - depth 100m
12144
12071
-
Arg
ACG
[ENA]
¢þ
>C181119570
CP025581
Actinomycetota
Nocardioides houyundeii 78 [CP025581]
3505032
3505105
+
Arg
ACG
-
¡û
>C191104176
CP033324
Actinomycetota
Nocardioides pantholopis 603 [CP033324]
103604
103677
+
Arg
ACG
-
¡û
>C191159919
CP038462
Actinomycetota
Nocardioides daphniae JCM 16608 [CP038462]
3375433
3375506
+
Arg
ACG
-
¡û
>C191182479
CP040748
Actinomycetota
Nocardioides jishulii dk3136 [CP040748]
3350275
3350348
+
Arg
ACG
-
¡û
>C191187014
CP041146
Actinomycetota
Nocardioides humi DCY24 [CP041146]
2699439
2699366
-
Arg
ACG
-
¡û
>W141564332
JIAR01000011
Actinomycetota
Nocardioides sp. URHA0020 [JIAR]
41671
41596
-
Arg
ACG
[ENA]
¡û
>W141750821
JNSE01000033
Actinomycetota
actinobacterium acAMD-2 [JNSE]
76879
76952
+
Arg
ACG
[ENA]
¡û
>W1911798419
QYRP01000002
Actinomycetota
Nocardioides cavernaquae K1W22B-1 [QYRP]
1295191
1295264
+
Arg
ACG
[ENA]
¡û
>W1810201598
POAG01000024
Actinomycetota
Nocardioides sp. 616 [POAG]
136218
136291
+
Arg
ACG
[ENA]
¡û
>W1810462640
PZYX01000014
Actinomycetota
Nocardioides allogilvus KCTC 49020 [PZYX]
47127
47200
+
Arg
ACG
[ENA]
¡û
>W1810756460
QPFD01000006
Actinomycetota
Nocardioides houyundeii 601 [QPFD]
43181
43255
+
Arg
ACG
[ENA]
¡û
>SRA1046258
SRR035093.264257
454 Sequencing (SRP001814)
150
77
-
Arg
ACG
[SRA]
>W11125273
ADVI01000011
Actinomycetota
Nocardioidaceae bacterium Broad-1 [ADVI]
15094
15021
-
Arg
ACG
[ENA]
¡û
>W1511540004
JZDP01000029
Actinomycetota
Gordonia sihwensis no. 9 [JZDP]
4326
4253
-
Arg
ACG
[ENA]
¡û
>W1511540072
JZDQ01000249
Actinomycetota
Nocardioides luteus BAFB [JZDQ]
4291
4364
+
Arg
ACG
[ENA]
¡û
>C161082862
CP015079
Actinomycetota
Nocardioides dokdonensis FR1436 [CP015079]
1467749
1467822
+
Arg
ACG
[Ensembl]
¡û
>W1610050512
BBFY01000045
Actinomycetota
Nocardioides jensenii JCM 1364 = NBRC 14755 [BBFY]
1860
1933
+
Arg
ACG
[ENA]
¡û
>W1610068468
BCRJ01000007
Actinomycetota
Nocardioides jensenii JCM 1364 = NBRC 14755 [BCRJ]
24322
24395
+
Arg
ACG
[ENA]
¡û
>W1610727249
LMGG01000001
Actinomycetota
Nocardioides sp. Root151 [LMGG]
1544050
1543977
-
Arg
ACG
[ENA]
¡û
>W1610727968
LMGV01000001
Actinomycetota
Nocardioides sp. Root614 [LMGV]
2163564
2163489
-
Arg
ACG
[ENA]
¡û
>W1610728662
LMHJ01000001
Actinomycetota
Nocardioides sp. Root682 [LMHJ]
2210015
2209940
-
Arg
ACG
[ENA]
¡û
>W1610729469
LMIA01000007
Actinomycetota
Nocardioides sp. Root190 [LMIA]
125319
125394
+
Arg
ACG
[ENA]
¡û
>W1610730091
LMIN01000009
Actinomycetota
Nocardioides sp. Root224 [LMIN]
256171
256098
-
Arg
ACG
[ENA]
¡û
>W1610736427
LMNH01000004
Actinomycetota
Nocardioides sp. Leaf285 [LMNH]
710416
710489
+
Arg
ACG
[ENA]
¡û
>W1610737235
LMNY01000003
Actinomycetota
Nocardioides sp. Leaf307 [LMNY]
6964
6889
-
Arg
ACG
[ENA]
¡û
>W1610743298
LMSR01000019
Actinomycetota
Nocardioides sp. Soil797 [LMSR]
159447
159372
-
Arg
ACG
[ENA]
¡û
>W1610938239
LUPQ01000037
Actinomycetota
Nocardioides sp. REDSEA-S43_B3 [LUPQ]
12144
12071
-
Arg
ACG
[ENA]
¡û
>W1611041242
LZMP01000024
Actinomycetota
Gordonia sp. UCD-TK1 [LZMP]
101229
101156
-
Arg
ACG
[ENA]
¡û
>W1710046911
BBFY01000045
Actinomycetota
Nocardioides jensenii JCM 1364 = NBRC 14755 [BBFY]
1860
1933
+
Arg
ACG
[ENA]
¡û
>W1710065841
BCRJ01000007
Actinomycetota
Nocardioides jensenii JCM 1364 = NBRC 14755 [BCRJ]
24322
24395
+
Arg
ACG
[ENA]
¡û
>W1710083315
BDJG01000014
Actinomycetota
Nocardioides sp. PD653 [BDJG]
5692
5619
-
Arg
ACG
[ENA]
¡û
>W1710564129
FOQG01000006
Actinomycetota
Nocardioides psychrotolerans [FOQG]
256031
256104
+
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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