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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.283095 (95 seq.)
>W1710862315
LMEH01000001
Actinomycetota
Leifsonia sp. Root1293 [LMEH]
2125521
2125596
+
Glu
TTC
[ENA]
¡û
>W1710865441
LMGR01000001
Actinomycetota
Leifsonia sp. Root60 [LMGR]
2125380
2125455
+
Glu
TTC
[ENA]
¡û
>W1710873304
LMMR01000005
Actinomycetota
Leifsonia sp. Leaf264 [LMMR]
14997
14922
-
Glu
TTC
[ENA]
¡û
>W1710873320
LMMR01000006
Actinomycetota
Leifsonia sp. Leaf264 [LMMR]
239457
239532
+
Glu
TTC
[ENA]
¡û
>W1710875484
LMOK01000002
Actinomycetota
Leifsonia sp. Leaf325 [LMOK]
356486
356411
-
Glu
TTC
[ENA]
¡û
>W1711018551
LQXA01000022
Actinomycetota
Clavibacter michiganensis subsp. tessellarius [LQXA]
18576
18501
-
Glu
TTC
[ENA]
¡û
>W1711079618
LSOE01000015
Actinomycetota
Clavibacter nebraskensis subsp. nebraskensis [LSOE]
56875
56800
-
Glu
TTC
[ENA]
¡û
>W1711357194
MDHB01000003
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHB]
143780
143855
+
Glu
TTC
[ENA]
¡û
>W1711357244
MDHC01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHC]
937117
937042
-
Glu
TTC
[ENA]
¡û
>W1711357275
MDHD01000309
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHD]
4083
4158
+
Glu
TTC
[ENA]
¡û
>W1711357318
MDHE01000339
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHE]
3827
3752
-
Glu
TTC
[ENA]
¡û
>W1711357366
MDHF01000215
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHF]
4009
4084
+
Glu
TTC
[ENA]
¡û
>W1711357407
MDHG01000002
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHG]
2514756
2514681
-
Glu
TTC
[ENA]
¡û
>W1711357468
MDHH01000008
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHH]
136622
136547
-
Glu
TTC
[ENA]
¡û
>W1711357501
MDHI01000004
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHI]
513086
513011
-
Glu
TTC
[ENA]
¡û
>W1711357562
MDHK01000006
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHK]
76497
76572
+
Glu
TTC
[ENA]
¡û
>W1711357649
MDHL01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHL]
966371
966296
-
Glu
TTC
[ENA]
¡û
>W1711357693
MDHM01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHM]
947285
947210
-
Glu
TTC
[ENA]
¡û
>W1711360694
MDJW01000007
Actinomycetota
Clavibacter michiganensis [MDJW]
749749
749824
+
Glu
TTC
[ENA]
¡û
>W1711360753
MDJX01000183
Actinomycetota
Clavibacter michiganensis [MDJX]
15497
15422
-
Glu
TTC
[ENA]
¡û
>W1711360776
MDJY01000005
Actinomycetota
Clavibacter michiganensis [MDJY]
13314
13389
+
Glu
TTC
[ENA]
¡û
>W1711360831
MDJZ01000005
Actinomycetota
Clavibacter michiganensis [MDJZ]
459099
459174
+
Glu
TTC
[ENA]
¡û
>W131216918
ATWH01000001
Actinomycetota
Glaciibacter superstes DSM 21135 [ATWH]
125363
125436
+
Glu
TTC
[ENA]
¡û
>C006175
AM711867
Actinomycetota
Clavibacter michiganensis subsp. michiganensis NCPPB 382 [AM711867]
958895
958820
-
Glu
TTC
[Ensembl]
¡û
>WENV180017290
FSWR01000062
[FSWR] metagenome; soil
38176
38249
+
Glu
TTC
[ENA]
¢þ
>WENV180024238
FTIF01349086
[FTIF] metagenome; soil
297
224
-
Glu
TTC
[ENA]
¢þ
>WENV180026457
FTIT01307554
[FTIT] metagenome; soil
125
50
-
Glu
TTC
[ENA]
¢þ
>WENV180029237
FTJI01250303
[FTJI] metagenome; soil
141
66
-
Glu
TTC
[ENA]
¢þ
>WENV180034761
FTKR01247693
[FTKR] metagenome; soil
141
66
-
Glu
TTC
[ENA]
¢þ
>WENV180304380
OBJI01016976
[OBJI] soil metagenome; soil
340
267
-
Glu
TTC
[ENA]
¢þ
>WENV180344538
OBLL01029451
[OBLL] soil metagenome; soil
378
305
-
Glu
TTC
[ENA]
¢þ
>WENV181385516
OFRI01110082
[OFRI] wastewater metagenome; Exp Tend VB 90WW
68
143
+
Glu
TTC
[ENA]
¢þ
>W141212811
AZQZ01000067
Actinomycetota
Clavibacter michiganensis michiganensis LMG 26808 [AZQZ]
9338
9263
-
Glu
TTC
[ENA]
¡û
>C08003572
AM849034
Actinomycetota
Clavibacter michiganensis subsp. sepedonicus ATCC 33113 [AM849034]
113592
113520
-
Glu
TTC
[Ensembl]
¡û
>WENV183697381
OUNJ010587079
[OUNJ] metagenome; soil
109
36
-
Glu
TTC
[ENA]
¢þ
>WENV170010447
APMI01017302
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
310
235
-
Glu
TTC
[ENA]
¢þ
>WENV170601076
FUWD010155216
[FUWD] metagenome; unknown
408
333
-
Glu
TTC
[ENA]
¢þ
>WENV170618370
FUWD012964803
[FUWD] metagenome; unknown
405
330
-
Glu
TTC
[ENA]
¢þ
>WENV170626100
FUWD013213653
[FUWD] metagenome; unknown
203
128
-
Glu
TTC
[ENA]
¢þ
>WENV170700625
LIDZ01015798
[LIDZ] food metagenome; wine grapes on drying loft during traditional withering process
524
451
-
Glu
TTC
[ENA]
¢þ
>C181048889
CP021034
Actinomycetota
Clavibacter michiganensis subsp. insidiosus R1-3 [CP021034]
2490857
2490932
+
Glu
TTC
-
¡û
>C181048932
CP021038
Actinomycetota
Clavibacter michiganensis subsp. insidiosus ATCC 10253 [CP021038]
2583687
2583762
+
Glu
TTC
-
¡û
>W141809734
JPRS01000710
Actinomycetota
Cryobacterium sp. MLB-32 [JPRS]
231
304
+
Glu
TTC
[ENA]
¡û
>W1910839682
MZMM01000001
Actinomycetota
Clavibacter sepedonicus subsp. sepedonicus CFIA-Cs3N [MZMM]
2311630
2311555
-
Glu
TTC
[ENA]
¡û
>W1910839722
MZMN01000003
Actinomycetota
Clavibacter sepedonicus subsp. sepedonicus CFIA-CsR14 [MZMN]
1903492
1903417
-
Glu
TTC
[ENA]
¡û
>W1910839772
MZMO01000001
Actinomycetota
Clavibacter michiganensis subsp. insidiosus LMG 3663 [MZMO]
851271
851196
-
Glu
TTC
[ENA]
¡û
>W1910839782
MZMP01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis LMG 7333 [MZMP]
129441
129516
+
Glu
TTC
[ENA]
¡û
>W1910839827
MZMQ01000001
Actinomycetota
Clavibacter michiganensis subsp. tessellarius ATCC 33566 [MZMQ]
325788
325863
+
Glu
TTC
[ENA]
¡û
>W1911748159
QWDZ01000185
Actinomycetota
Clavibacter michiganensis CFBP 1195 [QWDZ]
3107
3032
-
Glu
TTC
[ENA]
¡û
>W1911748195
QWEA01000271
Actinomycetota
Clavibacter michiganensis CFBP 6488 [QWEA]
2618
2693
+
Glu
TTC
[ENA]
¡û
>W1911748247
QWEB01000178
Actinomycetota
Clavibacter michiganensis CFBP 7491 [QWEB]
1928
2003
+
Glu
TTC
[ENA]
¡û
>W1911748272
QWEC01000047
Actinomycetota
Clavibacter michiganensis CFBP 7493 [QWEC]
5834
5759
-
Glu
TTC
[ENA]
¡û
>W1911748329
QWED01000166
Actinomycetota
Clavibacter nebraskensis CFBP 7577 [QWED]
3980
4055
+
Glu
TTC
[ENA]
¡û
>W1911748374
QWEE01000102
Actinomycetota
Clavibacter californiensis subsp. californiensis CFBP 8216 [QWEE]
5338
5263
-
Glu
TTC
[ENA]
¡û
>W1911749596
QWGS01000309
Actinomycetota
Clavibacter phaseoli subsp. chilensis CFBP 8217 [QWGS]
2659
2734
+
Glu
TTC
[ENA]
¡û
>W1911749608
QWGT01000010
Actinomycetota
Clavibacter lycopersici CFBP 8615 [QWGT]
26689
26764
+
Glu
TTC
[ENA]
¡û
>W1911749674
QWGU01000103
Actinomycetota
Clavibacter lycopersici CFBP 8616 [QWGU]
5127
5052
-
Glu
TTC
[ENA]
¡û
>W1911749725
QWGV01000302
Actinomycetota
Clavibacter phaseoli subsp. phaseoli CFBP 8627 [QWGV]
2768
2843
+
Glu
TTC
[ENA]
¡û
>W1911823624
QZVS01000096
Actinomycetota
Cryobacterium melibiosiphilum Hh39 [QZVS]
886
813
-
Glu
TTC
[ENA]
¡û
>W1810277260
PSTR01000031
Actinomycetota
Clavibacter michiganensis AY1B2 [PSTR]
9688
9613
-
Glu
TTC
[ENA]
¡û
>W1810277303
PSTS01000042
Actinomycetota
Clavibacter michiganensis AY1A6 [PSTS]
7926
7851
-
Glu
TTC
[ENA]
¡û
>W1810277351
PSTU01000004
Actinomycetota
Pseudoclavibacter sp. Z016 [PSTU]
14829
14756
-
Glu
TTC
[ENA]
¡û
>W1810277405
PSTV01000011
Actinomycetota
Clavibacter michiganensis Z002 [PSTV]
121827
121752
-
Glu
TTC
[ENA]
¡û
>W1810277454
PSTW01000012
Actinomycetota
Clavibacter michiganensis Z001 [PSTW]
54509
54434
-
Glu
TTC
[ENA]
¡û
>W1810277524
PSTX01000018
Actinomycetota
Pseudoclavibacter sp. RFBJ5 [PSTX]
12783
12710
-
Glu
TTC
[ENA]
¡û
>W1810277575
PSTY01000024
Actinomycetota
Pseudoclavibacter sp. RFBH5 [PSTY]
49615
49542
-
Glu
TTC
[ENA]
¡û
>W1810277585
PSTZ01000001
Actinomycetota
Pseudoclavibacter sp. RFBB5 [PSTZ]
459762
459689
-
Glu
TTC
[ENA]
¡û
>W1810277631
PSUA01000003
Actinomycetota
Pseudoclavibacter sp. RFBA6 [PSUA]
327948
327875
-
Glu
TTC
[ENA]
¡û
>W1810282050
PSXX01000011
Actinomycetota
Pseudoclavibacter sp. AY1H1 [PSXX]
137603
137676
+
Glu
TTC
[ENA]
¡û
>W1810282092
PSXY01000023
Actinomycetota
Clavibacter michiganensis AY1B3 [PSXY]
13508
13583
+
Glu
TTC
[ENA]
¡û
>W1810282101
PSXZ01000001
Actinomycetota
Pseudoclavibacter sp. RFBJ3 [PSXZ]
384951
384878
-
Glu
TTC
[ENA]
¡û
>W1810282156
PSYA01000003
Actinomycetota
Pseudoclavibacter sp. RFBI5 [PSYA]
18219
18146
-
Glu
TTC
[ENA]
¡û
>W1810282243
PSYB01000017
Actinomycetota
Pseudoclavibacter sp. RFBI4 [PSYB]
21104
21031
-
Glu
TTC
[ENA]
¡û
>W1810282256
PSYC01000011
Actinomycetota
Pseudoclavibacter sp. RFBG4 [PSYC]
9602
9529
-
Glu
TTC
[ENA]
¡û
>W1810364713
PVTL01000006
Actinomycetota
Glaciihabitans tibetensis CGMCC 1.12484 [PVTL]
23978
23905
-
Glu
TTC
[ENA]
¡û
>W1810476268
QANL01000001
Actinomycetota
Planctomonas deserti 13S1-3 [QANL]
510373
510446
+
Glu
TTC
[ENA]
¡û
>W1810860765
QTTK01000001
Actinomycetota
Clavibacter sp. 199 [QTTK]
296518
296592
+
Glu
TTC
[ENA]
¡û
>C151075648
CP011043
Actinomycetota
Clavibacter michiganensis subsp. insidiosus R1-1 [CP011043]
2571428
2571503
+
Glu
TTC
[Ensembl]
¡û
>C151095730
CP012573
Actinomycetota
Clavibacter capsici PF008 [CP012573]
762225
762150
-
Glu
TTC
-
¡û
>W1511317419
JPXF01000021
Actinomycetota
Cryobacterium roopkundense RuG17 [JPXF]
43708
43781
+
Glu
TTC
[ENA]
¡û
>W1511352465
JROD01000041
Actinomycetota
Clavibacter michiganensis CF11 [JROD]
2243
2318
+
Glu
TTC
[ENA]
¡û
>W1511570074
LAKL01000008
Actinomycetota
Clavibacter nebraskensis subsp. nebraskensis DOAB 397 [LAKL]
128985
128910
-
Glu
TTC
[ENA]
¡û
>W1610112236
CZJS01000093
Actinomycetota
Pseudoclavibacter helvolus [CZJS]
29682
29755
+
Glu
TTC
[ENA]
¡û
>W1610112549
CZJY01000068
Actinomycetota
Pseudoclavibacter helvolus [CZJY]
39868
39941
+
Glu
TTC
[ENA]
¡û
>C131019562
HE614873
Actinomycetota
Clavibacter nebraskensis NCPPB 2581 type strain: NCPPB 2581 [HE614873]
800284
800209
-
Glu
TTC
[Ensembl]
¡û
>W1610724661
LMEH01000001
Actinomycetota
Leifsonia sp. Root1293 [LMEH]
2125521
2125596
+
Glu
TTC
[ENA]
¡û
>W1610727787
LMGR01000001
Actinomycetota
Leifsonia sp. Root60 [LMGR]
2125380
2125455
+
Glu
TTC
[ENA]
¡û
>W1610735650
LMMR01000005
Actinomycetota
Leifsonia sp. Leaf264 [LMMR]
14997
14922
-
Glu
TTC
[ENA]
¡û
>W1610735666
LMMR01000006
Actinomycetota
Leifsonia sp. Leaf264 [LMMR]
239457
239532
+
Glu
TTC
[ENA]
¡û
>W1610737830
LMOK01000002
Actinomycetota
Leifsonia sp. Leaf325 [LMOK]
356486
356411
-
Glu
TTC
[ENA]
¡û
>W1610867027
LQXA01000022
Actinomycetota
Clavibacter michiganensis subsp. tessellarius [LQXA]
18576
18501
-
Glu
TTC
[ENA]
¡û
>W1610918528
LSOE01000015
Actinomycetota
Clavibacter nebraskensis subsp. nebraskensis [LSOE]
56875
56800
-
Glu
TTC
[ENA]
¡û
>W1710114940
CZJS01000093
Actinomycetota
Pseudoclavibacter helvolus [CZJS]
29682
29755
+
Glu
TTC
[ENA]
¡û
>W1710115253
CZJY01000068
Actinomycetota
Pseudoclavibacter helvolus [CZJY]
39868
39941
+
Glu
TTC
[ENA]
¡û
>W1710604665
FVZG01000001
Actinomycetota
Clavibacter michiganensis [FVZG]
737753
737678
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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