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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.283133 (112 seq.)
>W1710854653
LLXQ01000022
Actinomycetota
Mycobacterium kyorinense [LLXQ]
47140
47065
-
Thr
TGT
[ENA]
¡û
>W1710883269
LMVQ01000423
Actinomycetota
Mycobacterium sp. NAZ190054 [LMVQ]
8243
8168
-
Thr
TGT
[ENA]
¡û
>W1711006864
LQOR01000048
Actinomycetota
Mycobacterium conspicuum [LQOR]
205778
205703
-
Thr
TGT
[ENA]
¡û
>W1711007316
LQPB01000052
Actinomycetota
Mycobacterium interjectum [LQPB]
23232
23307
+
Thr
TGT
[ENA]
¡û
>W1711007467
LQPE01000106
Actinomycetota
Mycobacterium kyorinense [LQPE]
112823
112898
+
Thr
TGT
[ENA]
¡û
>W1711007568
LQPG01000018
Actinomycetota
Mycolicibacter longobardus longobardum [LQPG]
110361
110436
+
Thr
TGT
[ENA]
¡û
>W1711007654
LQPI01000039
Actinomycetota
Mycolicibacter nonchromogenicus nonchromogenicum [LQPI]
76779
76854
+
Thr
TGT
[ENA]
¡û
>W1711007700
LQPJ01000101
Actinomycetota
Mycobacterium palustre [LQPJ]
8284
8359
+
Thr
TGT
[ENA]
¡û
>W1711007756
LQPK01000016
Actinomycetota
Mycobacterium paraense [LQPK]
116351
116276
-
Thr
TGT
[ENA]
¡û
>W1711007797
LQPL01000013
Actinomycetota
Mycobacterium paraense [LQPL]
116354
116279
-
Thr
TGT
[ENA]
¡û
>W1711007910
LQPN01000080
Actinomycetota
Mycobacterium paraense [LQPN]
157691
157766
+
Thr
TGT
[ENA]
¡û
>W1711008111
LQPS01000020
Actinomycetota
Mycolicibacter senuensis senuense [LQPS]
19779
19704
-
Thr
TGT
[ENA]
¡û
>W1711275973
LZHT01000084
Actinomycetota
Mycobacterium sp. 852002-10029_SCH5224772 [LZHT]
35162
35237
+
Thr
TGT
[ENA]
¡û
>W1711276404
LZIC01000048
Actinomycetota
Mycobacterium sp. 852002-50816_SCH5313054-b [LZIC]
10790
10715
-
Thr
TGT
[ENA]
¡û
>W1711276966
LZIO01000070
Actinomycetota
Mycobacterium intracellulare [LZIO]
11068
10993
-
Thr
TGT
[ENA]
¡û
>W1711277064
LZIQ01000021
Actinomycetota
Mycolicibacterium celeriflavum 852002-51296_SCH5728562-a [LZIQ]
2430
2355
-
Thr
TGT
[ENA]
¡û
>W1711277168
LZIS01000066
Actinomycetota
Mycobacterium sp. E3198 [LZIS]
65584
65659
+
Thr
TGT
[ENA]
¡û
>W1711277274
LZIU01000114
Actinomycetota
Mycolicibacter heraklionensis heraklionense [LZIU]
20013
19938
-
Thr
TGT
[ENA]
¡û
>W1711278046
LZJK01000154
Actinomycetota
Mycolicibacter sinensis sinense [LZJK]
44841
44766
-
Thr
TGT
[ENA]
¡û
>W1711278212
LZJO01000089
Actinomycetota
Mycobacterium intracellulare [LZJO]
19946
20021
+
Thr
TGT
[ENA]
¡û
>W1711278390
LZJS01000063
Actinomycetota
Mycobacterium colombiense [LZJS]
234330
234255
-
Thr
TGT
[ENA]
¡û
>W1711278428
LZJT01000014
Actinomycetota
Mycobacterium intracellulare [LZJT]
114036
113961
-
Thr
TGT
[ENA]
¡û
>W1711278821
LZKB01000113
Actinomycetota
Mycolicibacter heraklionensis heraklionense [LZKB]
101476
101551
+
Thr
TGT
[ENA]
¡û
>W1711278971
LZKE01000149
Actinomycetota
Mycobacterium sp. E2327 [LZKE]
30339
30414
+
Thr
TGT
[ENA]
¡û
>W1711279067
LZKG01000097
Actinomycetota
Mycolicibacter sinensis sinense [LZKG]
3075
3150
+
Thr
TGT
[ENA]
¡û
>W1711279186
LZKJ01000064
Actinomycetota
Mycobacterium kyorinense [LZKJ]
11943
12018
+
Thr
TGT
[ENA]
¡û
>W1711279230
LZKK01000148
Actinomycetota
Mycobacterium sp. E796 [LZKK]
6260
6335
+
Thr
TGT
[ENA]
¡û
>W1711279590
LZKR01000124
Actinomycetota
Mycobacterium sp. 1245805.9 [LZKR]
2410
2485
+
Thr
TGT
[ENA]
¡û
>W1711280074
LZLB01000064
Actinomycetota
Mycolicibacter heraklionensis heraklionense [LZLB]
165806
165881
+
Thr
TGT
[ENA]
¡û
>W1711280384
LZLI01000075
Actinomycetota
Mycobacterium marseillense 1165549.7 [LZLI]
3128
3203
+
Thr
TGT
[ENA]
¡û
>W1711281445
LZME01000098
Actinomycetota
Mycolicibacter heraklionensis heraklionense [LZME]
38794
38719
-
Thr
TGT
[ENA]
¡û
>W1711285308
LZSE01000105
Actinomycetota
Mycobacterium sp. 1554424.7 [LZSE]
259978
259903
-
Thr
TGT
[ENA]
¡û
>W1711285382
LZSG01000001
Actinomycetota
Mycobacterium sp. 1164966.3 [LZSG]
107884
107809
-
Thr
TGT
[ENA]
¡û
>W1711325294
MBEI01000056
Actinomycetota
Mycobacterium colombiense [MBEI]
3758
3833
+
Thr
TGT
[ENA]
¡û
>W1711325424
MBEL01000020
Actinomycetota
Mycolicibacter heraklionensis heraklionense [MBEL]
35446
35371
-
Thr
TGT
[ENA]
¡û
>W1711325539
MBEN01000084
Actinomycetota
Mycobacterium colombiense [MBEN]
218853
218778
-
Thr
TGT
[ENA]
¡û
>W1711325576
MBEO01000073
Actinomycetota
Mycobacterium colombiense [MBEO]
255948
255873
-
Thr
TGT
[ENA]
¡û
>W1711325644
MBEP01000081
Actinomycetota
Mycobacterium colombiense [MBEP]
219055
218980
-
Thr
TGT
[ENA]
¡û
>W1711325795
MBES01000078
Actinomycetota
Mycobacterium sp. IS-1264 [MBES]
144269
144344
+
Thr
TGT
[ENA]
¡û
>W1711325853
MBEU01000010
Actinomycetota
Mycobacterium sp. IS-836 [MBEU]
268316
268241
-
Thr
TGT
[ENA]
¡û
>W1711772121
MVHC01000007
Actinomycetota
Mycolicibacter algericus DSM 45454 [MVHC]
36086
36161
+
Thr
TGT
[ENA]
¡û
>W1711772146
MVHD01000003
Actinomycetota
Mycobacterium alsense [MVHD]
10058
10133
+
Thr
TGT
[ENA]
¡û
>W1711772316
MVHH01000019
Actinomycetota
Mycolicibacter arupensis arupense [MVHH]
44792
44867
+
Thr
TGT
[ENA]
¡û
>W1711772632
MVHN01000034
Actinomycetota
Mycolicibacterium celeriflavum [MVHN]
2370
2295
-
Thr
TGT
[ENA]
¡û
>W1711772940
MVHU01000023
Actinomycetota
Mycolicibacter kumamotonensis kumamotonense [MVHU]
46786
46711
-
Thr
TGT
[ENA]
¡û
>W1711773053
MVHX01000001
Actinomycetota
Mycobacterium marseillense [MVHX]
58266
58341
+
Thr
TGT
[ENA]
¡û
>W1711773179
MVHZ01000020
Actinomycetota
Mycolicibacter minnesotensis minnesotense [MVHZ]
23325
23250
-
Thr
TGT
[ENA]
¡û
>W1711966637
NCXN01000004
Actinomycetota
Mycobacterium paraintracellulare [NCXN]
31494
31569
+
Thr
TGT
[ENA]
¡û
>WENV180304362
OBJI01010316
[OBJI] soil metagenome; soil
292
367
+
Thr
TGT
[ENA]
¢þ
>WENV180344490
OBLL01008568
[OBLL] soil metagenome; soil
165
90
-
Thr
TGT
[ENA]
¢þ
>W141089954
AUWQ01000079
Actinomycetota
Mycobacterium sp. UM_CSW [AUWQ]
42873
42948
+
Thr
TGT
[ENA]
¡û
>W141090008
AUWR01000100
Actinomycetota
Mycobacterium sp. UM_WGJ [AUWR]
4496
4421
-
Thr
TGT
[ENA]
¡û
>W08006080
ABIN01000009
Actinomycetota
Mycobacterium intracellulare ATCC 13950 [ABIN]
58967
58895
-
Thr
TGT
[ENA]
¡û
>W141238317
BBKA01000133
Actinomycetota
Mycobacterium kyorinense [BBKA]
11856
11781
-
Thr
TGT
[ENA]
¡û
>W141285728
JAOD01000007
Actinomycetota
Mycobacterium intracellulare 2285 (S) [JAOD]
276062
276137
+
Thr
TGT
[ENA]
¡û
>W141285843
JAOG01000001
Actinomycetota
Mycobacterium intracellulare 1956 [JAOG]
304973
305048
+
Thr
TGT
[ENA]
¡û
>W141286159
JAOM01000003
Actinomycetota
Mycobacterium intracellulare MIN_061107_1834 [JAOM]
123932
124007
+
Thr
TGT
[ENA]
¡û
>C181076321
CP023146
Actinomycetota
Mycobacterium intracellulare FLAC0133 [CP023146]
589703
589778
+
Thr
TGT
-
¡û
>C181076366
CP023147
Actinomycetota
Mycobacterium marseillense FLAC0026 [CP023147]
568330
568405
+
Thr
TGT
-
¡û
>C181076410
CP023149
Actinomycetota
Mycobacterium intracellulare FLAC0181 [CP023149]
588110
588185
+
Thr
TGT
-
¡û
>W1910343575
FTRV01000015
Actinomycetota
Mycobacterium terramassiliense AB308 [FTRV]
576639
576714
+
Thr
TGT
[ENA]
¡û
>W1911241640
NSFC01000001
Actinomycetota
Mycobacterium intracellulare FLAC0204 [NSFC]
597229
597304
+
Thr
TGT
[ENA]
¡û
>W1911241770
NSFE01000001
Actinomycetota
Mycobacterium intracellulare FLAC0162 [NSFE]
701801
701876
+
Thr
TGT
[ENA]
¡û
>W1911242046
NSFK01000001
Actinomycetota
Mycobacterium intracellulare FLAC0067 [NSFK]
670631
670706
+
Thr
TGT
[ENA]
¡û
>W1810003513
BFAB01000015
Actinomycetota
Mycobacterium sp. MFM001 [BFAB]
26886
26811
-
Thr
TGT
[ENA]
¡û
>W1810326056
PUEV01000085
Actinomycetota
Mycolicibacter virginiensis GF75 [PUEV]
23902
23827
-
Thr
TGT
[ENA]
¡û
>C151053050
CP009499
Actinomycetota
Mycobacterium intracellulare [CP009499]
586499
586574
+
Thr
TGT
[Ensembl]
¡û
>W1510456384
CPWZ01004706
Actinomycetota
Mycobacterium tuberculosis 401416 [CPWZ]
259
334
+
Thr
TGT
[ENA]
¡û
>W1510651761
CVTB01000033
Actinomycetota
Mycolicibacterium malmesburyense WCM 7299 [CVTB]
17292
17367
+
Thr
TGT
[ENA]
¡û
>C11115464
CP002329
Actinomycetota
Mycolicibacter sinensis JDM601 [CP002329]
3822082
3822007
-
Thr
TGT
[Ensembl]
¡û
>W1511350634
JRMM01000120
Actinomycetota
Mycobacterium sp. UM_Kg27 [JRMM]
12251
12176
-
Thr
TGT
[ENA]
¡û
>W1511350665
JRMN01000036
Actinomycetota
Mycobacterium sp. UM_NZ2 [JRMN]
25161
25236
+
Thr
TGT
[ENA]
¡û
>W1511582403
LASW02000017
Actinomycetota
Mycolicibacter arupensis GUC1 [LASW]
44864
44939
+
Thr
TGT
[ENA]
¡û
>C121004713
CP003053
Actinomycetota
Mycolicibacterium chubuense NBB4 [CP003053]
4762493
4762420
-
Thr
TGT
[Ensembl]
¡û
>C121010845
CP003322
Actinomycetota
Mycobacterium intracellulare ATCC 13950 [CP003322]
589159
589234
+
Thr
TGT
[Ensembl]
¡û
>C121010890
CP003323
Actinomycetota
Mycobacterium intracellulare MOTT-02 [CP003323]
585523
585598
+
Thr
TGT
[Ensembl]
¡û
>C121010935
CP003324
Actinomycetota
Mycobacterium paraintracellulare MOTT64 [CP003324]
597885
597960
+
Thr
TGT
[Ensembl]
¡û
>C121013457
CP003491
Actinomycetota
Mycobacterium sp. MOTT36Y [CP003491]
584296
584371
+
Thr
TGT
[Ensembl]
¡û
>W1610051617
BBHB01000203
Actinomycetota
Mycolicibacterium pyrenivorans JCM 15927 [BBHB]
420
345
-
Thr
TGT
[ENA]
¡û
>W121007808
AGAQ01000232
Actinomycetota
Mycobacterium avium subsp. avium Env 77 [AGAQ]
5649
5724
+
Thr
TGT
[ENA]
¡û
>W121126178
BAGQ01000100
Actinomycetota
Mycobacterium intracellulare M.i.198 [BAGQ]
3175
3250
+
Thr
TGT
[ENA]
¡û
>C131001368
CP002275
Actinomycetota
Mycobacterium intracellulare subsp. intracellulare MTCC 9506 [CP002275]
764763
764838
+
Thr
TGT
[Ensembl]
¡û
>W1610437192
FJVP01000035
Actinomycetota
Mycolicibacter icosiumassiliensis 8WA6 [FJVP]
39589
39514
-
Thr
TGT
[ENA]
¡û
>W1610437238
FJVQ01000143
Actinomycetota
Mycobacterium interjectum [FJVQ]
19700
19625
-
Thr
TGT
[ENA]
¡û
>W1610601073
LFOE01000013
Actinomycetota
Mycolicibacter kumamotonensis kumamotonense [LFOE]
36265
36340
+
Thr
TGT
[ENA]
¡û
>W1610716930
LLXQ01000022
Actinomycetota
Mycobacterium kyorinense [LLXQ]
47140
47065
-
Thr
TGT
[ENA]
¡û
>W1610745195
LMVQ01000423
Actinomycetota
Mycobacterium sp. NAZ190054 [LMVQ]
8243
8168
-
Thr
TGT
[ENA]
¡û
>W1611035258
LZHT01000084
Actinomycetota
Mycobacterium sp. 852002-10029_SCH5224772 [LZHT]
35162
35237
+
Thr
TGT
[ENA]
¡û
>W1611035689
LZIC01000048
Actinomycetota
Mycobacterium sp. 852002-50816_SCH5313054-b [LZIC]
10790
10715
-
Thr
TGT
[ENA]
¡û
>W1611036251
LZIO01000070
Actinomycetota
Mycobacterium intracellulare [LZIO]
11068
10993
-
Thr
TGT
[ENA]
¡û
>W1611036349
LZIQ01000021
Actinomycetota
Mycolicibacterium celeriflavum 852002-51296_SCH5728562-a [LZIQ]
2430
2355
-
Thr
TGT
[ENA]
¡û
>W1611036453
LZIS01000066
Actinomycetota
Mycobacterium sp. E3198 [LZIS]
65584
65659
+
Thr
TGT
[ENA]
¡û
>W1611036559
LZIU01000114
Actinomycetota
Mycolicibacter heraklionensis heraklionense [LZIU]
20013
19938
-
Thr
TGT
[ENA]
¡û
>W1611037331
LZJK01000154
Actinomycetota
Mycolicibacter sinensis sinense [LZJK]
44841
44766
-
Thr
TGT
[ENA]
¡û
>W1611037497
LZJO01000089
Actinomycetota
Mycobacterium intracellulare [LZJO]
19946
20021
+
Thr
TGT
[ENA]
¡û
>W1611037675
LZJS01000063
Actinomycetota
Mycobacterium colombiense [LZJS]
234330
234255
-
Thr
TGT
[ENA]
¡û
>W1611037713
LZJT01000014
Actinomycetota
Mycobacterium intracellulare [LZJT]
114036
113961
-
Thr
TGT
[ENA]
¡û
>W1611038106
LZKB01000113
Actinomycetota
Mycolicibacter heraklionensis heraklionense [LZKB]
101476
101551
+
Thr
TGT
[ENA]
¡û
>W1611038256
LZKE01000149
Actinomycetota
Mycobacterium sp. E2327 [LZKE]
30339
30414
+
Thr
TGT
[ENA]
¡û
>W1611038352
LZKG01000097
Actinomycetota
Mycolicibacter sinensis sinense [LZKG]
3075
3150
+
Thr
TGT
[ENA]
¡û
>W1611038471
LZKJ01000064
Actinomycetota
Mycobacterium kyorinense [LZKJ]
11943
12018
+
Thr
TGT
[ENA]
¡û
>W1611038515
LZKK01000148
Actinomycetota
Mycobacterium sp. E796 [LZKK]
6260
6335
+
Thr
TGT
[ENA]
¡û
>W1611038875
LZKR01000124
Actinomycetota
Mycobacterium sp. 1245805.9 [LZKR]
2410
2485
+
Thr
TGT
[ENA]
¡û
>W1611039359
LZLB01000064
Actinomycetota
Mycolicibacter heraklionensis heraklionense [LZLB]
165806
165881
+
Thr
TGT
[ENA]
¡û
>W1611039669
LZLI01000075
Actinomycetota
Mycobacterium marseillense 1165549.7 [LZLI]
3128
3203
+
Thr
TGT
[ENA]
¡û
>W1611040730
LZME01000098
Actinomycetota
Mycolicibacter heraklionensis heraklionense [LZME]
38794
38719
-
Thr
TGT
[ENA]
¡û
>W1611042869
LZSE01000105
Actinomycetota
Mycobacterium sp. 1554424.7 [LZSE]
259978
259903
-
Thr
TGT
[ENA]
¡û
>W1611042943
LZSG01000001
Actinomycetota
Mycobacterium sp. 1164966.3 [LZSG]
107884
107809
-
Thr
TGT
[ENA]
¡û
>W1710047995
BBHB01000203
Actinomycetota
Mycolicibacterium pyrenivorans JCM 15927 [BBHB]
420
345
-
Thr
TGT
[ENA]
¡û
>W1710436820
FJVP01000035
Actinomycetota
Mycolicibacter icosiumassiliensis 8WA6 [FJVP]
39589
39514
-
Thr
TGT
[ENA]
¡û
>W1710436866
FJVQ01000143
Actinomycetota
Mycobacterium interjectum [FJVQ]
19700
19625
-
Thr
TGT
[ENA]
¡û
>W1710722589
LFOE01000013
Actinomycetota
Mycolicibacter kumamotonensis kumamotonense [LFOE]
36265
36340
+
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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