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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.283216 (24 seq.)
>W1710891808
LNDB01000002
Bacillota
Candidatus Dichloromethanomonas elyunquensis RM [LNDB]
149417
149342
-
Arg
CCG
[ENA]
¡û
>W1710923811
LOCK01000028
Bacillota
Desulfitobacterium hafniense [LOCK]
417337
417262
-
Arg
CCG
[ENA]
¡û
>W1710927080
LOEZ01000007
Bacillota
Gracilibacter sp. BRH_c7a [LOEZ]
49122
49047
-
Arg
CCG
[ENA]
¡û
>W131162514
AQYY01000003
Bacillota
Dehalobacter sp. FTH1 [AQYY]
51771
51846
+
Arg
CCG
[ENA]
¡û
>W131162705
AQZD01000006
Bacillota
Desulfitobacterium hafniense TCP-A [AQZD]
143286
143361
+
Arg
CCG
[ENA]
¡û
>W131162828
AQZF01000017
Bacillota
Desulfitobacterium sp. PCE1 [AQZF]
40891
40816
-
Arg
CCG
[ENA]
¡û
>W131164693
ARAZ01000031
Bacillota
Desulfitobacterium hafniense PCP-1 [ARAZ]
18907
18982
+
Arg
CCG
[ENA]
¡û
>C007823
AP008230
Bacillota
Desulfitobacterium hafniense Y51 [AP008230]
2151299
2151224
-
Arg
CCG
[Ensembl]
¡û
>WENV180298791
OBJA01616758
[OBJA] soil metagenome; sediment, water from around vicinity
127
52
-
Arg
CCG
[ENA]
¢þ
>w002149
AAAW04000001
Bacillota
Desulfitobacterium hafniense DCB-2 [AAAW]
363776
363704
-
Arg
CCG
[ENA]
¡û
>C09104033
CP001336
Bacillota
Desulfitobacterium hafniense DCB-2 [CP001336]
3235539
3235464
-
Arg
CCG
[Ensembl]
¡û
>W1910647177
LXPC01000017
Bacillota
Dehalobacter sp. MCB1 [LXPC]
45296
45371
+
Arg
CCG
[ENA]
¡û
>W1911608695
PNXX01000007
Bacillota
Dehalobacter sp. 14DCB1 [PNXX]
78087
78012
-
Arg
CCG
[ENA]
¡û
>W1911613568
POSF01000020
Bacillota
Dehalobacter sp. 12DCB1 [POSF]
78087
78012
-
Arg
CCG
[ENA]
¡û
>C11120630
CP002547
Bacillota
Syntrophobotulus glycolicus DSM 8271 [CP002547]
2097288
2097363
+
Arg
CCG
[Ensembl]
¡û
>C121011475
CP003348
Bacillota
Desulfitobacterium dehalogenans ATCC 51507 [CP003348]
2496118
2496043
-
Arg
CCG
[Ensembl]
¡û
>W121007273
AFZX01000057
Bacillota
Desulfitobacterium hafniense DP7 [AFZX]
18741
18816
+
Arg
CCG
[ENA]
¡û
>W121010386
AGJE01000024
Bacillota
Desulfitobacterium dichloroeliminans LMG P-21439 [AGJE]
18898
18973
+
Arg
CCG
[ENA]
¡û
>W121010520
AGJH01000007
Bacillota
Desulfitobacterium dehalogenans ATCC 51507 [AGJH]
142697
142622
-
Arg
CCG
[ENA]
¡û
>C131003283
CP003344
Bacillota
Desulfitobacterium dichloroeliminans LMG P-21439 [CP003344]
2139476
2139401
-
Arg
CCG
[Ensembl]
¡û
>W1610752173
LNDB01000002
Bacillota
Candidatus Dichloromethanomonas elyunquensis RM [LNDB]
149417
149342
-
Arg
CCG
[ENA]
¡û
>W1610781412
LOCK01000028
Bacillota
Desulfitobacterium hafniense [LOCK]
417337
417262
-
Arg
CCG
[ENA]
¡û
>W1610784622
LOEZ01000007
Bacillota
Gracilibacter sp. BRH_c7a [LOEZ]
49122
49047
-
Arg
CCG
[ENA]
¡û
>W1710593522
FRDN01000012
Bacillota
Desulfitobacterium chlororespirans DSM 11544 [FRDN]
170935
171010
+
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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