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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.283219 (7 seq.)
>WENV180606633
OCPT01064915
[OCPT] human gut metagenome; human gut
328
401
+
Ile2
CAT
[ENA]
¡û
>WENV181746177
OGQN01000413
[OGQN] human gut metagenome; faeces
13723
13796
+
Ile2
CAT
[ENA]
¡û
>WENV181779447
OGRI01006465
[OGRI] human gut metagenome; faeces
688
761
+
Ile2
CAT
[ENA]
¡û
>WENV181998193
OHAU01026917
[OHAU] human gut metagenome; faeces
1022
948
-
Ile2
CAT
[ENA]
¡û
>WENV183101761
OLNH01001211
[OLNH] human gut metagenome; faeces
14275
14348
+
Ile2
CAT
[ENA]
¡û
>WENV183166974
OLOY01007946
[OLOY] human gut metagenome; faeces
251
324
+
Ile2
CAT
[ENA]
¡û
>W1810873706
QUEQ01000015
Bacillota
Ruminococcus sp. OF02-6 [QUEQ]
23736
23663
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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