This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.283219 (32 seq.)
>W1710891802
LNDB01000001
Bacillota
Candidatus Dichloromethanomonas elyunquensis RM [LNDB]
205244
205169
-
His
GTG
[ENA]
¡û
>W1710923805
LOCK01000017
Bacillota
Desulfitobacterium hafniense [LOCK]
395933
395858
-
His
GTG
[ENA]
¡û
>W1710927095
LOEZ01000044
Bacillota
Gracilibacter sp. BRH_c7a [LOEZ]
41799
41874
+
His
GTG
[ENA]
¡û
>W131162524
AQYY01000005
Bacillota
Dehalobacter sp. FTH1 [AQYY]
15765
15840
+
His
GTG
[ENA]
¡û
>W1711342449
MCHF01000026
Bacillota
Dehalobacter sp. TeCB1 [MCHF]
54791
54716
-
His
GTG
[ENA]
¡û
>W131162717
AQZD01000009
Bacillota
Desulfitobacterium hafniense TCP-A [AQZD]
58554
58629
+
His
GTG
[ENA]
¡û
>W131162837
AQZF01000024
Bacillota
Desulfitobacterium sp. PCE1 [AQZF]
498772
498697
-
His
GTG
[ENA]
¡û
>W131164717
ARAZ01000047
Bacillota
Desulfitobacterium hafniense PCP-1 [ARAZ]
346505
346580
+
His
GTG
[ENA]
¡û
>C007813
AP008230
Bacillota
Desulfitobacterium hafniense Y51 [AP008230]
3646906
3646831
-
His
GTG
[Ensembl]
¡û
>WENV180346685
OBLN01223158
[OBLN] sediment metagenome; sediment
143
218
+
His
GTG
[ENA]
¢þ
>w002178
AAAW04000005
Bacillota
Desulfitobacterium hafniense DCB-2 [AAAW]
52572
52495
-
His
GTG
[ENA]
¡û
>W141088312
AUUR01000161
Bacillota
Dehalobacter sp. UNSWDHB [AUUR]
106106
106181
+
His
GTG
[ENA]
¡û
>W141246540
CANE01000001
Bacillota
Dehalobacter restrictus E1 [CANE]
179010
179085
+
His
GTG
[ENA]
¡û
>W141246595
CANF01000012
Bacillota
Dehalobacter sp. E1 x Sedimentibacter sp. B4 coculture E1 X Sedimentibacter sp. B4 coculture [CANF]
54637
54562
-
His
GTG
[ENA]
¡û
>WENV183668612
ORJL010756674
[ORJL] groundwater metagenome; groundwater
18880
18955
+
His
GTG
[ENA]
¢þ
>WENV170967745
MTKW01003222
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
18899
18974
+
His
GTG
[ENA]
¢þ
>C141011762
CP007033
Bacillota
Dehalobacter restrictus DSM 9455 PER-K23; DSM 9455 [CP007033]
2568197
2568122
-
His
GTG
[Ensembl]
¡û
>C09104023
CP001336
Bacillota
Desulfitobacterium hafniense DCB-2 [CP001336]
4658894
4658819
-
His
GTG
[Ensembl]
¡û
>W1910647168
LXPC01000012
Bacillota
Dehalobacter sp. MCB1 [LXPC]
366983
367058
+
His
GTG
[ENA]
¡û
>W1911608673
PNXX01000001
Bacillota
Dehalobacter sp. 14DCB1 [PNXX]
779119
779044
-
His
GTG
[ENA]
¡û
>W1911613558
POSF01000017
Bacillota
Dehalobacter sp. 12DCB1 [POSF]
12720
12645
-
His
GTG
[ENA]
¡û
>C121011465
CP003348
Bacillota
Desulfitobacterium dehalogenans ATCC 51507 [CP003348]
3787838
3787763
-
His
GTG
[Ensembl]
¡û
>W121007293
AFZX01000137
Bacillota
Desulfitobacterium hafniense DP7 [AFZX]
42450
42375
-
His
GTG
[ENA]
¡û
>W121010343
AGJE01000005
Bacillota
Desulfitobacterium dichloroeliminans LMG P-21439 [AGJE]
127455
127380
-
His
GTG
[ENA]
¡û
>W121010510
AGJH01000001
Bacillota
Desulfitobacterium dehalogenans ATCC 51507 [AGJH]
304449
304374
-
His
GTG
[ENA]
¡û
>C131008524
CP003869
Bacillota
Dehalobacter sp. DCA [CP003869]
2688560
2688485
-
His
GTG
[Ensembl]
¡û
>C131008575
CP003870
Bacillota
Dehalobacter sp. CF [CP003870]
2717698
2717623
-
His
GTG
[Ensembl]
¡û
>C131003275
CP003344
Bacillota
Desulfitobacterium dichloroeliminans LMG P-21439 [CP003344]
3152139
3152064
-
His
GTG
[Ensembl]
¡û
>W1610752167
LNDB01000001
Bacillota
Candidatus Dichloromethanomonas elyunquensis RM [LNDB]
205244
205169
-
His
GTG
[ENA]
¡û
>W1610781406
LOCK01000017
Bacillota
Desulfitobacterium hafniense [LOCK]
395933
395858
-
His
GTG
[ENA]
¡û
>W1610784637
LOEZ01000044
Bacillota
Gracilibacter sp. BRH_c7a [LOEZ]
41799
41874
+
His
GTG
[ENA]
¡û
>W1710593558
FRDN01000022
Bacillota
Desulfitobacterium chlororespirans DSM 11544 [FRDN]
5783
5708
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK