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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.283270 (92 seq.)
>W1710910415
LNRA01000005
Gammaproteobacteria
Photobacterium leiognathi subsp. mandapamensis [LNRA]
2100
2176
+
Arg
TCT
[ENA]
¡û
>W1710910757
LNRC01000007
Gammaproteobacteria
Photobacterium leiognathi [LNRC]
142470
142394
-
Arg
TCT
[ENA]
¡û
>W1711233261
LYBT01000099
Gammaproteobacteria
Photobacterium damselae subsp. damselae [LYBT]
1196
1272
+
Arg
TCT
[ENA]
¡û
>W1711233335
LYBU01000023
Gammaproteobacteria
Photobacterium damselae subsp. damselae [LYBU]
1168
1244
+
Arg
TCT
[ENA]
¡û
>W1711272352
LZFH01000011
Gammaproteobacteria
Photobacterium damselae [LZFH]
71034
70958
-
Arg
TCT
[ENA]
¡û
>W1711272679
LZFN01000137
Gammaproteobacteria
Photobacterium damselae subsp. damselae [LZFN]
11598
11522
-
Arg
TCT
[ENA]
¡û
>W1711341521
MCFX02000001
Gammaproteobacteria
Photobacterium damselae subsp. piscicida [MCFX]
806486
806562
+
Arg
TCT
[ENA]
¡û
>W1711351480
MDCJ01000002
Gammaproteobacteria
Vibrio scophthalmi [MDCJ]
2381227
2381151
-
Arg
TCT
[ENA]
¡û
>C171047091
CP016307
Gammaproteobacteria
Vibrio scophthalmi VS-12 [CP016307, CP016308]
1184535
1184611
+
Arg
TCT
-
¡û
>C171116750
CP021151
Gammaproteobacteria
Photobacterium damselae subsp. damselae KC-Na-1 [CP021151, CP021152]
2126734
2126658
-
Arg
TCT
-
¡û
>w014952
AAOU01000008
Gammaproteobacteria
Photobacterium sp. SKA34 [AAOU]
18630
18708
+
Arg
TCT
[ENA]
¡û
>w014361
AAOJ01000002
Gammaproteobacteria
Photobacterium angustum S14 [AAOJ]
832751
832673
-
Arg
TCT
[ENA]
¡û
>W141026811
AKYG01000054
Gammaproteobacteria
Photobacterium damselae subsp. piscicida DI21 [AKYG]
13769
13845
+
Arg
TCT
[ENA]
¡û
>W141229607
BANQ01000015
Gammaproteobacteria
Photobacterium leiognathi lrivu.4.1 [BANQ]
164071
164147
+
Arg
TCT
[ENA]
¡û
>WENV170704463
LLEK01000633
[LLEK] bioreactor metagenome; day79 25degC chemostat 2011 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
4368
4444
+
Arg
TCT
[ENA]
¢þ
>C181004514
AP018045
Gammaproteobacteria
Photobacterium damselae subsp. piscicida 91-197 [AP018045, AP018046]
2335541
2335465
-
Arg
TCT
-
¡û
>C181030982
CP018297
Gammaproteobacteria
Photobacterium damselae Phdp Wu-1 [CP018297, CP018298]
860420
860496
+
Arg
TCT
-
¡û
>C191143210
CP035457
Gammaproteobacteria
Photobacterium damselae subsp. damselae KC-Na-NB1 [CP035457, CP035458]
2106802
2106878
+
Arg
TCT
-
¡û
>W1910617776
LIXE01000002
Gammaproteobacteria
Vibrio sp. PID23_8 [LIXE]
303088
303012
-
Arg
TCT
[ENA]
¡û
>W1910617897
LIXM01000020
Gammaproteobacteria
Vibrio sp. PID17_43 [LIXM]
91470
91394
-
Arg
TCT
[ENA]
¡û
>W1910617898
LIXM01000020
Gammaproteobacteria
Vibrio sp. PID17_43 [LIXM]
88170
88094
-
Arg
TCT
[ENA]
¡û
>W1910664283
MBTQ01000064
Gammaproteobacteria
Photobacterium damselae Hep-2a-11 [MBTQ]
71415
71339
-
Arg
TCT
[ENA]
¡û
>W1910796363
MSCJ01000001
Gammaproteobacteria
Photobacterium angustum LC1-200 [MSCJ]
491946
492022
+
Arg
TCT
[ENA]
¡û
>W1911743617
QVMU01000013
Gammaproteobacteria
Vibrio sinensis BEI233 [QVMU]
107509
107433
-
Arg
TCT
[ENA]
¡û
>W1810058502
PDJL01000005
Gammaproteobacteria
Vibrio sp. ES.051 [PDJL]
289823
289747
-
Arg
TCT
[ENA]
¡û
>W1810061099
PDNH02000003
Gammaproteobacteria
Photobacterium leiognathi JS01 [PDNH]
517473
517549
+
Arg
TCT
[ENA]
¡û
>W1810366994
PVXF01000078
Gammaproteobacteria
Photobacterium damselae subsp. damselae 940804-1/1 [PVXF]
90272
90196
-
Arg
TCT
[ENA]
¡û
>W1810367021
PVXG01000025
Gammaproteobacteria
Photobacterium damselae subsp. damselae 940804-1/2 [PVXG]
11594
11518
-
Arg
TCT
[ENA]
¡û
>W1810367077
PVXH01000022
Gammaproteobacteria
Photobacterium damselae subsp. damselae 206328-2 [PVXH]
11575
11499
-
Arg
TCT
[ENA]
¡û
>W1810367122
PVXI01000044
Gammaproteobacteria
Photobacterium damselae subsp. damselae 206317-1 [PVXI]
11551
11475
-
Arg
TCT
[ENA]
¡û
>W1810405598
PYLZ01000009
Gammaproteobacteria
Photobacterium swingsii DSM 24669 [PYLZ]
192370
192294
-
Arg
TCT
[ENA]
¡û
>W1810407332
PYMM01000009
Gammaproteobacteria
Photobacterium damselae BT-6 [PYMM]
7936
8012
+
Arg
TCT
[ENA]
¡û
>W1810410958
PYNN01000028
Gammaproteobacteria
Photobacterium leiognathi subsp. mandapamensis PL-721 [PYNN]
123505
123429
-
Arg
TCT
[ENA]
¡û
>W1810411019
PYNO01000005
Gammaproteobacteria
Photobacterium leiognathi subsp. mandapamensis AJ-1a [PYNO]
130220
130144
-
Arg
TCT
[ENA]
¡û
>W1810411156
PYNP01000003
Gammaproteobacteria
Photobacterium leiognathi subsp. mandapamensis gjord.1.1 [PYNP]
61841
61917
+
Arg
TCT
[ENA]
¡û
>W1810411282
PYNQ01000002
Gammaproteobacteria
Photobacterium leiognathi subsp. mandapamensis ajapo.4.1 [PYNQ]
466793
466717
-
Arg
TCT
[ENA]
¡û
>W1810411463
PYNR01000012
Gammaproteobacteria
Photobacterium leiognathi subsp. mandapamensis ajapo.3.1 [PYNR]
129141
129065
-
Arg
TCT
[ENA]
¡û
>W1810411596
PYNS01000011
Gammaproteobacteria
Photobacterium leiognathi subsp. mandapamensis Res.4.1 [PYNS]
57779
57855
+
Arg
TCT
[ENA]
¡û
>W1810411695
PYNT01000003
Gammaproteobacteria
Photobacterium leiognathi subsp. mandapamensis svers.1.1 [PYNT]
179624
179700
+
Arg
TCT
[ENA]
¡û
>W1810411844
PYNU01000002
Gammaproteobacteria
Photobacterium sp. GB-210 [PYNU]
202704
202780
+
Arg
TCT
[ENA]
¡û
>W1810411980
PYNV01000002
Gammaproteobacteria
Photobacterium sp. GB-72 [PYNV]
45462
45538
+
Arg
TCT
[ENA]
¡û
>W1810412196
PYNW01000017
Gammaproteobacteria
Photobacterium sp. GB-56 [PYNW]
55365
55441
+
Arg
TCT
[ENA]
¡û
>W1810412249
PYNX01000002
Gammaproteobacteria
Photobacterium sp. GB-50 [PYNX]
45454
45530
+
Arg
TCT
[ENA]
¡û
>W1810412456
PYNY01000014
Gammaproteobacteria
Photobacterium sp. GB-36 [PYNY]
57847
57771
-
Arg
TCT
[ENA]
¡û
>W1810412553
PYNZ01000004
Gammaproteobacteria
Photobacterium sp. GB-27 [PYNZ]
180697
180773
+
Arg
TCT
[ENA]
¡û
>W1810412662
PYOA01000002
Gammaproteobacteria
Photobacterium sp. GB-3 [PYOA]
414853
414777
-
Arg
TCT
[ENA]
¡û
>W1810412820
PYOB01000005
Gammaproteobacteria
Photobacterium sp. GB-1 [PYOB]
182564
182640
+
Arg
TCT
[ENA]
¡û
>W1810413273
PYOE01000097
Gammaproteobacteria
Photobacterium damselae ATCC 29689 [PYOE]
9945
9869
-
Arg
TCT
[ENA]
¡û
>W1810413374
PYOF01000105
Gammaproteobacteria
Photobacterium damselae ATCC 29688 [PYOF]
9945
9869
-
Arg
TCT
[ENA]
¡û
>W1810413464
PYOG01000012
Gammaproteobacteria
Photobacterium damselae ATCC 33539 [PYOG]
95485
95409
-
Arg
TCT
[ENA]
¡û
>W1810413719
PYOI01000023
Gammaproteobacteria
Photobacterium leiognathi ATCC 25521 [PYOI]
71670
71594
-
Arg
TCT
[ENA]
¡û
>W1810413853
PYOJ01000014
Gammaproteobacteria
Photobacterium leiognathi ATCC 33979 [PYOJ]
70543
70467
-
Arg
TCT
[ENA]
¡û
>W1810413939
PYOK01000001
Gammaproteobacteria
Photobacterium angustum ATCC 33975 [PYOK]
452410
452334
-
Arg
TCT
[ENA]
¡û
>W1810414095
PYOL01000005
Gammaproteobacteria
Photobacterium angustum ATCC 33977 [PYOL]
74746
74670
-
Arg
TCT
[ENA]
¡û
>W1810414283
PYOM01000015
Gammaproteobacteria
Photobacterium angustum ATCC 25915 [PYOM]
56853
56929
+
Arg
TCT
[ENA]
¡û
>W1810414798
PYOQ01000002
Gammaproteobacteria
Photobacterium angustum A10-3 [PYOQ]
542531
542455
-
Arg
TCT
[ENA]
¡û
>W1810414993
PYOR01000010
Gammaproteobacteria
Photobacterium angustum A10-2 [PYOR]
45147
45223
+
Arg
TCT
[ENA]
¡û
>W1810415112
PYOS01000009
Gammaproteobacteria
Photobacterium angustum A10-1 [PYOS]
85004
84928
-
Arg
TCT
[ENA]
¡û
>W1810415256
PYOT01000004
Gammaproteobacteria
Photobacterium angustum A9-1 [PYOT]
445582
445506
-
Arg
TCT
[ENA]
¡û
>W1810415418
PYOU01000013
Gammaproteobacteria
Photobacterium angustum A6-1 [PYOU]
66284
66208
-
Arg
TCT
[ENA]
¡û
>W1810415526
PYOV01000003
Gammaproteobacteria
Photobacterium angustum A2-4 [PYOV]
179511
179587
+
Arg
TCT
[ENA]
¡û
>W1810415699
PYOW01000008
Gammaproteobacteria
Photobacterium angustum A2-3 [PYOW]
36583
36507
-
Arg
TCT
[ENA]
¡û
>W1810415801
PYOX01000003
Gammaproteobacteria
Photobacterium angustum A2-2 [PYOX]
179510
179586
+
Arg
TCT
[ENA]
¡û
>W1810415958
PYOY01000006
Gammaproteobacteria
Photobacterium angustum A2-1 [PYOY]
179510
179586
+
Arg
TCT
[ENA]
¡û
>W10110155
ADBS01000001
Gammaproteobacteria
Photobacterium damselae subsp. damselae CIP 102761 [ADBS]
509610
509686
+
Arg
TCT
[ENA]
¡û
>W11112592
ADBS01000001
Gammaproteobacteria
Photobacterium damselae subsp. damselae CIP 102761 [ADBS]
509610
509686
+
Arg
TCT
[ENA]
¡û
>W1511548886
JZSI01000012
Gammaproteobacteria
Photobacterium damselae subsp. damselae ATCC 33539 [JZSI]
102858
102782
-
Arg
TCT
[ENA]
¡û
>W1511549010
JZSK01000002
Gammaproteobacteria
Photobacterium leiognathi ATCC 25521 [JZSK]
2033
2109
+
Arg
TCT
[ENA]
¡û
>W1511549084
JZSL01000001
Gammaproteobacteria
Photobacterium leiognathi ATCC 33979 [JZSL]
72844
72768
-
Arg
TCT
[ENA]
¡û
>W1511549206
JZSM01000021
Gammaproteobacteria
Photobacterium angustum ATCC 33975 [JZSM]
56464
56540
+
Arg
TCT
[ENA]
¡û
>W1511549246
JZSN01000003
Gammaproteobacteria
Photobacterium angustum ATCC 33977 [JZSN]
179011
179087
+
Arg
TCT
[ENA]
¡û
>W1511549332
JZSO01000004
Gammaproteobacteria
Photobacterium angustum ATCC 25915 [JZSO]
144055
144131
+
Arg
TCT
[ENA]
¡û
>W1511549639
JZSS01000002
Gammaproteobacteria
Photobacterium angustum GCSL-A10-3 [JZSS]
177572
177648
+
Arg
TCT
[ENA]
¡û
>W1511549717
JZST01000001
Gammaproteobacteria
Photobacterium angustum GCSL-A10-2 [JZST]
177609
177685
+
Arg
TCT
[ENA]
¡û
>W1511549813
JZSU01000003
Gammaproteobacteria
Photobacterium angustum GCSL-A10-1 [JZSU]
177577
177653
+
Arg
TCT
[ENA]
¡û
>W1511549900
JZSV01000002
Gammaproteobacteria
Photobacterium angustum GCSL-A9 [JZSV]
330437
330361
-
Arg
TCT
[ENA]
¡û
>W1511549988
JZSW01000003
Gammaproteobacteria
Photobacterium angustum GCSL-A6 [JZSW]
323761
323685
-
Arg
TCT
[ENA]
¡û
>W1511550076
JZSX01000003
Gammaproteobacteria
Photobacterium angustum GCSL-A2-4 [JZSX]
178787
178863
+
Arg
TCT
[ENA]
¡û
>W1511550168
JZSY01000012
Gammaproteobacteria
Photobacterium angustum GCSL-A2-3 [JZSY]
102858
102782
-
Arg
TCT
[ENA]
¡û
>W1511550230
JZSZ01000003
Gammaproteobacteria
Photobacterium angustum GCSL-A2-2 [JZSZ]
45679
45755
+
Arg
TCT
[ENA]
¡û
>W1511550302
JZTA01000003
Gammaproteobacteria
Photobacterium angustum GCSL-A2-1 [JZTA]
178932
179008
+
Arg
TCT
[ENA]
¡û
>W1511657199
LELC01000010
Gammaproteobacteria
Photobacterium swingsii CAIM 1393 [LELC]
61300
61376
+
Arg
TCT
[ENA]
¡û
>W11175228
AFWD01000098
Gammaproteobacteria
Vibrio sp. N418 [AFWD]
122243
122167
-
Arg
TCT
[ENA]
¡û
>W11175260
AFWE01000080
Gammaproteobacteria
Vibrio scophthalmi LMG 19158 [AFWE]
1175
1251
+
Arg
TCT
[ENA]
¡û
>W11175356
AFWF01000288
Gammaproteobacteria
Vibrio ichthyoenteri ATCC 700023 [AFWF]
3568
3492
-
Arg
TCT
[ENA]
¡û
>W11184600
BACE01000012
Gammaproteobacteria
Photobacterium leiognathi subsp. mandapamensis svers.1.1. [BACE]
450498
450422
-
Arg
TCT
[ENA]
¡û
>W1610575550
LAFZ01000010
Gammaproteobacteria
Photobacterium leiognathi subsp. mandapamensis [LAFZ]
495094
495018
-
Arg
TCT
[ENA]
¡û
>W1610768774
LNRA01000005
Gammaproteobacteria
Photobacterium leiognathi subsp. mandapamensis [LNRA]
2100
2176
+
Arg
TCT
[ENA]
¡û
>W1610769116
LNRC01000007
Gammaproteobacteria
Photobacterium leiognathi [LNRC]
142470
142394
-
Arg
TCT
[ENA]
¡û
>W1611031916
LZFH01000011
Gammaproteobacteria
Photobacterium damselae [LZFH]
71034
70958
-
Arg
TCT
[ENA]
¡û
>W1710084801
BDMQ01000001
Gammaproteobacteria
Photobacterium damselae subsp. piscicida [BDMQ]
457240
457164
-
Arg
TCT
[ENA]
¡û
>W1710693814
LAFZ01000010
Gammaproteobacteria
Photobacterium leiognathi subsp. mandapamensis [LAFZ]
495094
495018
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK