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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.283294 (11 seq.)
>W1711048242
LRPM01000022
Bacillota
Anaerococcus tetradius [LRPM]
33138
33213
+
Ala
GGC
[ENA]
¡û
>WENV180712379
ODFT01000305
[ODFT] human metagenome; G_DNA_Posterior fornix
14845
14920
+
Ala
GGC
[ENA]
¢þ
>WENV181329351
OFLW01003911
[OFLW] metagenome; faeces
504
429
-
Ala
GGC
[ENA]
¢þ
>WENV182406223
OIEX01002565
[OIEX] human gut metagenome; fecal sample from infant N3_177 DOL 45
925
850
-
Ala
GGC
[ENA]
¢þ
>W141240878
CAGU01000035
Bacillota
Anaerococcus vaginalis PH9 [CAGU]
43539
43464
-
Ala
GGC
[ENA]
¡û
>WENV182961334
OKWK01001407
[OKWK] human gut metagenome; stool
3183
3108
-
Ala
GGC
[ENA]
¢þ
>W09122344
ACGC01000050
Bacillota
Anaerococcus tetradius ATCC 35098 [ACGC]
18346
18271
-
Ala
GGC
[ENA]
¡û
>W1510667743
CWHU01000004
Bacillota
Anaerococcus jeddahensis SB3 [CWHU]
62255
62180
-
Ala
GGC
[ENA]
¡û
>W1610164738
FAVH01000004
Bacillota
Anaerococcus rubeinfantis MT16 [FAVH]
37678
37603
-
Ala
GGC
[ENA]
¡û
>W1610889371
LRPM01000022
Bacillota
Anaerococcus tetradius [LRPM]
33138
33213
+
Ala
GGC
[ENA]
¡û
>W1710166405
FAVH01000004
Bacillota
Anaerococcus rubeinfantis MT16 [FAVH]
37678
37603
-
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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