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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.283304 (36 seq.)
>W1711019826
LQYG01000002
Bacillota
Heyndrickxia coagulans [LQYG]
81735
81663
-
Phe
GAA
[ENA]
¡û
>W1711019904
LQYH01000077
Bacillota
Heyndrickxia coagulans [LQYH]
37656
37728
+
Phe
GAA
[ENA]
¡û
>W1711019969
LQYI01000013
Bacillota
Heyndrickxia coagulans [LQYI]
8149
8077
-
Phe
GAA
[ENA]
¡û
>W1711048274
LRPN01000039
Bacillota
Heyndrickxia coagulans [LRPN]
8348
8276
-
Phe
GAA
[ENA]
¡û
>W131054088
ANAP01000046
Bacillota
Heyndrickxia coagulans XZL9 [ANAP]
18125
18053
-
Phe
GAA
[ENA]
¡û
>W131054165
ANAQ01000068
Bacillota
Heyndrickxia coagulans H-1 [ANAQ]
12062
11990
-
Phe
GAA
[ENA]
¡û
>W131214783
ATUM01000020
Bacillota
Heyndrickxia coagulans DSM 1 = ATCC 7050 [ATUM]
8444
8372
-
Phe
GAA
[ENA]
¡û
>C171050263
CP016622
Bacillota
Parageobacillus thermoglucosidasius NCIMB 11955 [CP016622]
1243110
1243185
+
Phe
GAA
-
¡û
>C171050280
CP016622
Bacillota
Parageobacillus thermoglucosidasius NCIMB 11955 [CP016622]
3842220
3842145
-
Phe
GAA
-
¡û
>C171068995
CP017888
Bacillota
Heyndrickxia coagulans BC-HY1 [CP017888]
2818335
2818263
-
Phe
GAA
-
¡û
>w022733
AAWV01000003
Bacillota
Heyndrickxia coagulans 36D1 [AAWV]
48814
48739
-
Phe
GAA
[ENA]
¡û
>WENV180296206
OBJA01000063
[OBJA] soil metagenome; sediment, water from around vicinity
107895
107820
-
Phe
GAA
[ENA]
¢þ
>W141169466
AXVW01000005
Bacillota
Heyndrickxia coagulans CSIL1 [AXVW]
37598
37670
+
Phe
GAA
[ENA]
¡û
>C181117278
CP025437
Bacillota
Heyndrickxia coagulans LA204 [CP025437]
3615905
3615833
-
Phe
GAA
-
¡û
>C181136940
CP026649
Bacillota
Heyndrickxia coagulans R11 [CP026649]
3576082
3576010
-
Phe
GAA
-
¡û
>C191138666
CP035305
Bacillota
Heyndrickxia coagulans IDCC1201 [CP035305]
2765528
2765456
-
Phe
GAA
-
¡û
>W1910281545
FQUB01000033
Bacillota
Heyndrickxia coagulans DSM 1 = ATCC 7050 [FQUB]
715
643
-
Phe
GAA
[ENA]
¡û
>W1910896427
NFZN01000017
Bacillota
Heyndrickxia coagulans HS243 [NFZN]
37430
37502
+
Phe
GAA
[ENA]
¡û
>W1810756330
QPFA01000001
Bacillota
Heyndrickxia coagulans ZB29 [QPFA]
2335897
2335825
-
Phe
GAA
[ENA]
¡û
>W1810806591
QRUS01000016
Bacillota
Heyndrickxia coagulans AF24-21 [QRUS]
12061
11989
-
Phe
GAA
[ENA]
¡û
>W1810806856
QRUW01000019
Bacillota
Heyndrickxia coagulans AF24-19 [QRUW]
12085
12013
-
Phe
GAA
[ENA]
¡û
>C151057894
CP009709
Bacillota
Heyndrickxia coagulans DSM 1 = ATCC 7050 [CP009709]
2176790
2176718
-
Phe
GAA
[Ensembl]
¡û
>C151070420
CP010525
Bacillota
Heyndrickxia coagulans HM-08 [CP010525]
28022
28094
+
Phe
GAA
[Ensembl]
¡û
>C151087827
CP011939
Bacillota
Heyndrickxia coagulans S-lac [CP011939]
1065921
1065849
-
Phe
GAA
[Ensembl]
¡û
>C11102714
CP002472
Bacillota
Heyndrickxia coagulans 2-6 [CP002472]
3046811
3046739
-
Phe
GAA
[Ensembl]
¡û
>C11102772
CP003056
Bacillota
Heyndrickxia coagulans 36D1 [CP003056]
1417980
1418052
+
Phe
GAA
[Ensembl]
¡û
>W1511312697
JPSK01000064
Bacillota
Heyndrickxia coagulans GBI-30, 6086 [JPSK]
37395
37467
+
Phe
GAA
[ENA]
¡û
>W1511387959
JSVI01000007
Bacillota
Heyndrickxia coagulans P38 [JSVI]
68874
68802
-
Phe
GAA
[ENA]
¡û
>W1511595222
LBMQ01000007
Bacillota
Heyndrickxia coagulans NL01 [LBMQ]
57782
57710
-
Phe
GAA
[ENA]
¡û
>W121104838
ALAS01000273
Bacillota
Heyndrickxia coagulans DSM 1 = ATCC 7050 [ALAS]
29689
29761
+
Phe
GAA
[ENA]
¡û
>W1610574050
JZDH01000068
Bacillota
Heyndrickxia coagulans [JZDH]
26112
26184
+
Phe
GAA
[ENA]
¡û
>W1610868114
LQYG01000002
Bacillota
Heyndrickxia coagulans [LQYG]
81735
81663
-
Phe
GAA
[ENA]
¡û
>W1610868192
LQYH01000077
Bacillota
Heyndrickxia coagulans [LQYH]
37656
37728
+
Phe
GAA
[ENA]
¡û
>W1610868257
LQYI01000013
Bacillota
Heyndrickxia coagulans [LQYI]
8149
8077
-
Phe
GAA
[ENA]
¡û
>W1610889403
LRPN01000039
Bacillota
Heyndrickxia coagulans [LRPN]
8348
8276
-
Phe
GAA
[ENA]
¡û
>W1710686829
JZDH01000068
Bacillota
Heyndrickxia coagulans [JZDH]
26112
26184
+
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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