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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.283320 (83 seq.)
>W1711055207
LRUK01000020
Alphaproteobacteria
Sphingobium sp. AM [LRUK]
63313
63388
+
Glu
TTC
[ENA]
¡û
>W1711089895
LTAB01000018
Alphaproteobacteria
Sphingobium sp. 22B [LTAB]
195476
195551
+
Glu
TTC
[ENA]
¡û
>W1711250037
LYMJ01000015
Alphaproteobacteria
Sphingobium sp. 20006FA paucimobilis [LYMJ]
63346
63421
+
Glu
TTC
[ENA]
¡û
>W1711284894
LZRP01000007
Alphaproteobacteria
Erythrobacter sp. QSSC1-22B [LZRP]
140358
140283
-
Glu
TTC
[ENA]
¡û
>W1711434835
MINO01000042
Alphaproteobacteria
Sphingobium phenoxybenzoativorans [MINO]
3319
3244
-
Glu
TTC
[ENA]
¡û
>C171019714
CP013070
Alphaproteobacteria
Sphingobium indicum B90A [CP013070]
2733952
2733877
-
Glu
TTC
-
¡û
>C171056561
CP017075
Alphaproteobacteria
Novosphingobium resinovorum SA1 [CP017075]
1174882
1174957
+
Glu
TTC
-
¡û
>C171056563
CP017075
Alphaproteobacteria
Novosphingobium resinovorum SA1 [CP017075]
1175106
1175181
+
Glu
TTC
-
¡û
>W131196340
ASTG01000005
Alphaproteobacteria
Sphingobium bisphenolivorans YL23 [ASTG]
175365
175290
-
Glu
TTC
[ENA]
¡û
>W131224701
AUDA01000042
Alphaproteobacteria
Sphingobium indicum IP26 [AUDA]
76
1
-
Glu
TTC
[ENA]
¡û
>W131224702
AUDA01000044
Alphaproteobacteria
Sphingobium indicum IP26 [AUDA]
35638
35563
-
Glu
TTC
[ENA]
¡û
>W131224740
AUDA01000188
Alphaproteobacteria
Sphingobium indicum IP26 [AUDA]
13594
13669
+
Glu
TTC
[ENA]
¡û
>WENV180016145
FSUD01000645
[FSUD] metagenome; soil
1668
1743
+
Glu
TTC
[ENA]
¢þ
>WENV180016594
FSVK01000169
[FSVK] metagenome; soil
3924
3849
-
Glu
TTC
[ENA]
¢þ
>WENV180019695
FTCH01000201
[FTCH] metagenome; soil
78
3
-
Glu
TTC
[ENA]
¢þ
>WENV180019696
FTCH01000206
[FTCH] metagenome; soil
5716
5641
-
Glu
TTC
[ENA]
¢þ
>WENV180026946
FTIV01004523
[FTIV] metagenome; soil
182
257
+
Glu
TTC
[ENA]
¢þ
>WENV180297972
OBJA01126959
[OBJA] soil metagenome; sediment, water from around vicinity
512
586
+
Glu
TTC
[ENA]
¢þ
>W141076304
ATDO01000141
Alphaproteobacteria
Sphingobium sp. HDIP04 [ATDO]
36926
37001
+
Glu
TTC
[ENA]
¡û
>W141078113
ATHO01000143
Alphaproteobacteria
Sphingobium quisquiliarum P25 [ATHO]
31880
31805
-
Glu
TTC
[ENA]
¡û
>W141078495
ATIB01000092
Alphaproteobacteria
Sphingobium baderi LL03 [ATIB]
12798
12873
+
Glu
TTC
[ENA]
¡û
>W141090268
AUWY01000103
Alphaproteobacteria
Sphingobium ummariense RL-3 [AUWY]
921
846
-
Glu
TTC
[ENA]
¡û
>WENV181856863
OGWN01022795
[OGWN] freshwater metagenome; freshwater
678
603
-
Glu
TTC
[ENA]
¢þ
>W141231017
BATN01000011
Alphaproteobacteria
Sphingobium fuliginis KK22 [BATN]
664
589
-
Glu
TTC
[ENA]
¡û
>W141285086
JANF02000050
Alphaproteobacteria
Sphingobium indicum F2 [JANF]
13595
13670
+
Glu
TTC
[ENA]
¡û
>WENV183727073
PJTO01003596
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
1340
1415
+
Glu
TTC
[ENA]
¢þ
>WENV183727454
PJTP01000002
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
567502
567577
+
Glu
TTC
[ENA]
¢þ
>WENV183728249
PJTQ01000005
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
567503
567578
+
Glu
TTC
[ENA]
¢þ
>WENV183736718
PJUD01000004
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
567503
567578
+
Glu
TTC
[ENA]
¢þ
>WENV183738496
PJUE01000006
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
567503
567578
+
Glu
TTC
[ENA]
¢þ
>WENV183739746
PJUF01000005
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
567503
567578
+
Glu
TTC
[ENA]
¢þ
>WENV183794505
PVBE010103362
[PVBE] marine metagenome; water
82
157
+
Glu
TTC
[ENA]
¢þ
>W141400521
JDRU02000025
Alphaproteobacteria
Sphingomonas sp. BHC-A [JDRU]
20013
19938
-
Glu
TTC
[ENA]
¡û
>WENV170371852
CETS01044891
[CETS] marine metagenome genome assembly TARA_122_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1061
986
-
Glu
TTC
[ENA]
¢þ
>WENV170564986
CZQE01000080
[CZQE] hydrothermal vent metagenome; ocean water
3987
3912
-
Glu
TTC
[ENA]
¢þ
>W141462313
JFHR01000034
Alphaproteobacteria
Sphingobium chlorophenolicum [JFHR]
47670
47595
-
Glu
TTC
[ENA]
¡û
>W141484869
JFYY01000002
Alphaproteobacteria
Sphingomonas paucimobilis [JFYY]
307565
307490
-
Glu
TTC
[ENA]
¡û
>W141484934
JFYZ01000003
Alphaproteobacteria
Novosphingobium resinovorum [JFYZ]
180763
180688
-
Glu
TTC
[ENA]
¡û
>W141484936
JFYZ01000003
Alphaproteobacteria
Novosphingobium resinovorum [JFYZ]
180539
180464
-
Glu
TTC
[ENA]
¡û
>C181003254
AP017655
Alphaproteobacteria
Sphingobium cloacae JCM 10874 [AP017655]
2641545
2641470
-
Glu
TTC
-
¡û
>C191185552
CP041016
Alphaproteobacteria
Sphingobium fuliginis ATCC 27551 [CP041016, CP041017]
2910215
2910140
-
Glu
TTC
-
¡û
>W141726129
JNAC01000028
Alphaproteobacteria
Sphingobium sp. DC-2 [JNAC]
102351
102426
+
Glu
TTC
[ENA]
¡û
>W1910649288
LXYF01000028
Alphaproteobacteria
Sphingobium sp. SA916 [LXYF]
27989
27914
-
Glu
TTC
[ENA]
¡û
>W1910651501
LYMM01000029
Alphaproteobacteria
Novosphingobium guangzhouense SA925 [LYMM]
218109
218184
+
Glu
TTC
[ENA]
¡û
>W1910651502
LYMM01000029
Alphaproteobacteria
Novosphingobium guangzhouense SA925 [LYMM]
218222
218297
+
Glu
TTC
[ENA]
¡û
>W1910889704
NETV01000001
Alphaproteobacteria
Sphingobium sp. LB126 [NETV]
2197080
2197155
+
Glu
TTC
[ENA]
¡û
>W1911765806
QXDC01000005
Alphaproteobacteria
Hephaestia caeni DSM 25527 [QXDC]
282749
282824
+
Glu
TTC
[ENA]
¡û
>W1810000448
BEWI01000030
Alphaproteobacteria
Sphingobium fuliginis OMI [BEWI]
231765
231690
-
Glu
TTC
[ENA]
¡û
>W1810239641
PPSM01000066
Alphaproteobacteria
Novosphingobium sp. HII-3 [PPSM]
52195
52120
-
Glu
TTC
[ENA]
¡û
>W1810239642
PPSM01000066
Alphaproteobacteria
Novosphingobium sp. HII-3 [PPSM]
52083
52008
-
Glu
CTC
[ENA]
¡û
>W1810239643
PPSM01000066
Alphaproteobacteria
Novosphingobium sp. HII-3 [PPSM]
51985
51910
-
Glu
TTC
[ENA]
¡û
>W1810676639
QKMD01000012
Alphaproteobacteria
Novosphingobium sp. GV010 [QKMD]
20161
20236
+
Glu
TTC
[ENA]
¡û
>W1810858383
QTJP01000001
Alphaproteobacteria
Sphingomonas crusticola MIMD3 [QTJP]
1708135
1708210
+
Glu
TTC
[ENA]
¡û
>C151074587
CP010954
Alphaproteobacteria
Sphingobium sp. YBL2 [CP010954]
585829
585754
-
Glu
TTC
[Ensembl]
¡û
>W10126775
AEDK01000003
Alphaproteobacteria
Sphingobium chlorophenolicum L-1 [AEDK]
588859
588934
+
Glu
TTC
[ENA]
¡û
>C10111675
AP010803
Alphaproteobacteria
Sphingobium indicum UT26S [AP010803, AP010804]
3190933
3190858
-
Glu
TTC
[Ensembl]
¡û
>W1510757093
JACV01000047
Alphaproteobacteria
Sphingobium baderi LL03 [JACV]
94981
94906
-
Glu
TTC
[ENA]
¡û
>C11119793
CP002798
Alphaproteobacteria
Sphingobium chlorophenolicum L-1 [CP002798, CP002799]
1897541
1897466
-
Glu
TTC
[Ensembl]
¡û
>W11134036
AEDK01000003
Alphaproteobacteria
Sphingobium chlorophenolicum L-1 [AEDK]
588859
588934
+
Glu
TTC
[ENA]
¡û
>W1511592086
LBIC01000001
Alphaproteobacteria
Sphingobium chungbukense DJ77 [LBIC]
35172
35097
-
Glu
TTC
[ENA]
¡û
>C161003364
CP005083
Alphaproteobacteria
Sphingobium sp. TKS [CP005083, CP005084]
3931457
3931382
-
Glu
TTC
[Ensembl]
¡û
>C161054568
CP013264
Alphaproteobacteria
Sphingobium baderi DE-13 [CP013264]
109906
109831
-
Glu
TTC
[Ensembl]
¡û
>W1610071983
BCUM01000027
Alphaproteobacteria
Sphingobium cloacae NBRC 102517 [BCUM]
35442
35517
+
Glu
TTC
[ENA]
¡û
>W1610076910
BCZC01000154
Alphaproteobacteria
Sphingobium chlorophenolicum NBRC 16172 [BCZC]
8444
8519
+
Glu
TTC
[ENA]
¡û
>W121071164
AJXQ01000135
Alphaproteobacteria
Sphingobium indicum B90A [AJXQ]
24654
24579
-
Glu
TTC
[ENA]
¡û
>W121081078
AKFJ01000037
Alphaproteobacteria
Novosphingobium sp. Rr 2-17 [AKFJ]
31610
31535
-
Glu
TTC
[ENA]
¡û
>W121119243
ALVC01000318
Alphaproteobacteria
Sphingomonas sp. LH128 [ALVC]
77
2
-
Glu
TTC
[ENA]
¡û
>W121119258
ALVC01000568
Alphaproteobacteria
Sphingomonas sp. LH128 [ALVC]
77
2
-
Glu
TTC
[ENA]
¡û
>W1610609142
LFVX01000004
Alphaproteobacteria
Sphingobium sp. Ndbn-10 [LFVX]
74694
74619
-
Glu
TTC
[ENA]
¡û
>W1610784427
LOET01000051
Alphaproteobacteria
Sphingomonadales bacterium BRH_c3 [LOET]
24715
24790
+
Glu
TTC
[ENA]
¡û
>W1610896253
LRUK01000020
Alphaproteobacteria
Sphingobium sp. AM [LRUK]
63313
63388
+
Glu
TTC
[ENA]
¡û
>W1610924239
LTAB01000018
Alphaproteobacteria
Sphingobium sp. 22B [LTAB]
195476
195551
+
Glu
TTC
[ENA]
¡û
>W1611016919
LYMJ01000015
Alphaproteobacteria
Sphingobium sp. 20006FA paucimobilis [LYMJ]
63346
63421
+
Glu
TTC
[ENA]
¡û
>W1611042679
LZRP01000007
Alphaproteobacteria
Erythrobacter sp. QSSC1-22B [LZRP]
140358
140283
-
Glu
TTC
[ENA]
¡û
>W1710069185
BCUM01000027
Alphaproteobacteria
Sphingobium cloacae NBRC 102517 [BCUM]
35442
35517
+
Glu
TTC
[ENA]
¡û
>W1710074599
BCZC01000154
Alphaproteobacteria
Sphingobium chlorophenolicum NBRC 16172 [BCZC]
8444
8519
+
Glu
TTC
[ENA]
¡û
>W1710562090
FOOR01000024
Alphaproteobacteria
Novosphingobium sp. CF614 [FOOR]
38981
39056
+
Glu
TTC
[ENA]
¡û
>W1710562091
FOOR01000024
Alphaproteobacteria
Novosphingobium sp. CF614 [FOOR]
39092
39167
+
Glu
CTC
[ENA]
¡û
>W1710575553
FOZG01000001
Alphaproteobacteria
Sphingomonas jatrophae S5-249 [FOZG]
1238244
1238169
-
Glu
TTC
[ENA]
¡û
>W1710604566
FVZE01000001
Alphaproteobacteria
Novosphingobium mathurense [FVZE]
657993
657918
-
Glu
TTC
[ENA]
¡û
>W1710604567
FVZE01000001
Alphaproteobacteria
Novosphingobium mathurense [FVZE]
657879
657804
-
Glu
CTC
[ENA]
¡û
>W1710604568
FVZE01000001
Alphaproteobacteria
Novosphingobium mathurense [FVZE]
657762
657687
-
Glu
TTC
[ENA]
¡û
>W1710730429
LFVX01000004
Alphaproteobacteria
Sphingobium sp. Ndbn-10 [LFVX]
74694
74619
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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