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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.283321 (58 seq.)
>W1711055225
LRUK01000051
Alphaproteobacteria
Sphingobium sp. AM [LRUK]
28331
28406
+
Thr
CGT
[ENA]
¡û
>W1711082182
LSTR01000026
Alphaproteobacteria
Sphingobium yanoikuyae [LSTR]
189401
189476
+
Thr
CGT
[ENA]
¡û
>W1711083842
LSVG01000007
Alphaproteobacteria
Sphingobium yanoikuyae [LSVG]
50880
50805
-
Thr
CGT
[ENA]
¡û
>W1711089907
LTAB01000041
Alphaproteobacteria
Sphingobium sp. 22B [LTAB]
28341
28416
+
Thr
CGT
[ENA]
¡û
>W1711146762
LVJD01000107
Alphaproteobacteria
Sphingobium yanoikuyae [LVJD]
9517
9442
-
Thr
CGT
[ENA]
¡û
>W1711250042
LYMJ01000032
Alphaproteobacteria
Sphingobium sp. 20006FA paucimobilis [LYMJ]
28350
28425
+
Thr
CGT
[ENA]
¡û
>W1712084198
NHRH01000009
Alphaproteobacteria
Sphingomonas sp. CDS-1 [NHRH]
41586
41661
+
Thr
CGT
[ENA]
¡û
>C171019718
CP013070
Alphaproteobacteria
Sphingobium indicum B90A [CP013070]
1972636
1972561
-
Thr
CGT
-
¡û
>W131002997
AGZU01000008
Alphaproteobacteria
Sphingobium yanoikuyae ATCC 51230 [AGZU]
1460213
1460288
+
Thr
CGT
[ENA]
¡û
>W131052396
AMYX01000089
Alphaproteobacteria
alpha proteobacterium LLX12A [AMYX]
12581
12656
+
Thr
CGT
[ENA]
¡û
>W131224720
AUDA01000097
Alphaproteobacteria
Sphingobium indicum IP26 [AUDA]
15405
15330
-
Thr
CGT
[ENA]
¡û
>W141076290
ATDO01000105
Alphaproteobacteria
Sphingobium sp. HDIP04 [ATDO]
7399
7474
+
Thr
CGT
[ENA]
¡û
>W141078091
ATHO01000025
Alphaproteobacteria
Sphingobium quisquiliarum P25 [ATHO]
3029
2954
-
Thr
CGT
[ENA]
¡û
>W141090251
AUWY01000063
Alphaproteobacteria
Sphingobium ummariense RL-3 [AUWY]
3048
3123
+
Thr
CGT
[ENA]
¡û
>WENV181227810
OFDN01049049
[OFDN] hot springs metagenome; Water
737
662
-
Thr
CGT
[ENA]
¢þ
>W141231028
BATN01000048
Alphaproteobacteria
Sphingobium fuliginis KK22 [BATN]
30252
30327
+
Thr
CGT
[ENA]
¡û
>W141285066
JANF02000007
Alphaproteobacteria
Sphingobium indicum F2 [JANF]
122620
122545
-
Thr
CGT
[ENA]
¡û
>WENV183732709
PJTX01007425
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
1082
1157
+
Thr
CGT
[ENA]
¢þ
>WENV183733132
PJTY01000104
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
8392
8317
-
Thr
CGT
[ENA]
¢þ
>WENV183734239
PJTZ01000343
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
4488
4413
-
Thr
CGT
[ENA]
¢þ
>WENV183736947
PJUD01000117
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
87274
87349
+
Thr
CGT
[ENA]
¢þ
>W141484888
JFYY01000010
Alphaproteobacteria
Sphingomonas paucimobilis [JFYY]
175872
175947
+
Thr
CGT
[ENA]
¡û
>C181047596
CP020925
Alphaproteobacteria
Sphingobium yanoikuyae SHJ [CP020925]
5031854
5031779
-
Thr
CGT
-
¡û
>C181089664
CP023741
Alphaproteobacteria
Sphingobium yanoikuyae S72 [CP023741]
144636
144711
+
Thr
CGT
-
¡û
>C191003800
AP018664
Alphaproteobacteria
Sphingobium amiense DSM 16289 [AP018664]
1985857
1985782
-
Thr
CGT
-
¡û
>W141520477
JGVR01000070
Alphaproteobacteria
Sphingobium yanoikuyae [JGVR]
1268
1193
-
Thr
CGT
[ENA]
¡û
>C191063613
CP029335
Alphaproteobacteria
Sphingobium sp. LF-16 [CP029335]
125607
125682
+
Thr
CGT
-
¡û
>C191103893
CP033230
Alphaproteobacteria
Sphingobium yanoikuyae SJTF8 [CP033230]
4717889
4717964
+
Thr
CGT
-
¡û
>C191163676
CP039248
Alphaproteobacteria
Sphingobium sp. PAMC28499 [CP039248]
1709885
1709960
+
Thr
CGT
-
¡û
>C191185553
CP041016
Alphaproteobacteria
Sphingobium fuliginis ATCC 27551 [CP041016, CP041017]
2554563
2554488
-
Thr
CGT
-
¡û
>W141726133
JNAC01000033
Alphaproteobacteria
Sphingobium sp. DC-2 [JNAC]
7503
7428
-
Thr
CGT
[ENA]
¡û
>W141807729
JPOU01000002
Alphaproteobacteria
Sphingobium yanoikuyae [JPOU]
12126
12051
-
Thr
CGT
[ENA]
¡û
>W1910649306
LXYF01000057
Alphaproteobacteria
Sphingobium sp. SA916 [LXYF]
30495
30570
+
Thr
CGT
[ENA]
¡û
>W1910889706
NETV01000001
Alphaproteobacteria
Sphingobium sp. LB126 [NETV]
2453186
2453261
+
Thr
CGT
[ENA]
¡û
>W1911114847
NOIW01000155
Alphaproteobacteria
Sphingobium sp. IP1 [NOIW]
8220
8295
+
Thr
CGT
[ENA]
¡û
>W1911688291
QLJK01000007
Alphaproteobacteria
Sphingomonas sp. S-NIH.Pt3_0716 [QLJK]
125926
125851
-
Thr
CGT
[ENA]
¡û
>W1911722418
QRAL01000002
Alphaproteobacteria
Sphingobium yanoikuyae SK-NIH.Env6_1116 [QRAL]
85613
85538
-
Thr
CGT
[ENA]
¡û
>W1810000494
BEWI01000032
Alphaproteobacteria
Sphingobium fuliginis OMI [BEWI]
264788
264713
-
Thr
CGT
[ENA]
¡û
>W1810400858
PYGL01000002
Alphaproteobacteria
Sphingobium sp. AEW4 [PYGL]
175335
175260
-
Thr
CGT
[ENA]
¡û
>C151074588
CP010954
Alphaproteobacteria
Sphingobium sp. YBL2 [CP010954]
152192
152117
-
Thr
CGT
[Ensembl]
¡û
>SRA1047957
SRR035094.75574
454 Sequencing (SRP001815)
334
259
-
Thr
CGT
[SRA]
>C10111658
AP010803
Alphaproteobacteria
Sphingobium indicum UT26S [AP010803, AP010804]
930847
930922
+
Thr
CGT
[Ensembl]
¡û
>W1510941342
JFFT01000019
Alphaproteobacteria
Sphingobium yanoikuyae SHJ [JFFT]
372
297
-
Thr
CGT
[ENA]
¡û
>W1511592106
LBIC01000004
Alphaproteobacteria
Sphingobium chungbukense DJ77 [LBIC]
167017
166942
-
Thr
CGT
[ENA]
¡û
>W1511646446
LECE01000003
Alphaproteobacteria
Sphingomonas sp. MEA3-1 [LECE]
2689
2614
-
Thr
CGT
[ENA]
¡û
>W11176429
AFXE01000061
Alphaproteobacteria
Sphingobium yanoikuyae XLDN2-5 [AFXE]
6515
6590
+
Thr
CGT
[ENA]
¡û
>C161054534
CP013264
Alphaproteobacteria
Sphingobium baderi DE-13 [CP013264]
2070549
2070624
+
Thr
CGT
[Ensembl]
¡û
>W1610072038
BCUN01000044
Alphaproteobacteria
Sphingobium amiense NBRC 102518 [BCUN]
1369
1294
-
Thr
CGT
[ENA]
¡û
>W121071161
AJXQ01000132
Alphaproteobacteria
Sphingobium indicum B90A [AJXQ]
21866
21941
+
Thr
CGT
[ENA]
¡û
>W1610609175
LFVX01000045
Alphaproteobacteria
Sphingobium sp. Ndbn-10 [LFVX]
7063
6988
-
Thr
CGT
[ENA]
¡û
>W1610896271
LRUK01000051
Alphaproteobacteria
Sphingobium sp. AM [LRUK]
28331
28406
+
Thr
CGT
[ENA]
¡û
>W1610920967
LSTR01000026
Alphaproteobacteria
Sphingobium yanoikuyae [LSTR]
189401
189476
+
Thr
CGT
[ENA]
¡û
>W1610922595
LSVG01000007
Alphaproteobacteria
Sphingobium yanoikuyae [LSVG]
50880
50805
-
Thr
CGT
[ENA]
¡û
>W1610924251
LTAB01000041
Alphaproteobacteria
Sphingobium sp. 22B [LTAB]
28341
28416
+
Thr
CGT
[ENA]
¡û
>W1611016924
LYMJ01000032
Alphaproteobacteria
Sphingobium sp. 20006FA paucimobilis [LYMJ]
28350
28425
+
Thr
CGT
[ENA]
¡û
>W1710069240
BCUN01000044
Alphaproteobacteria
Sphingobium amiense NBRC 102518 [BCUN]
1369
1294
-
Thr
CGT
[ENA]
¡û
>W1710592146
FRCG01000002
Alphaproteobacteria
Sphingobium sp. YR657 [FRCG]
625438
625513
+
Thr
CGT
[ENA]
¡û
>W1710730462
LFVX01000045
Alphaproteobacteria
Sphingobium sp. Ndbn-10 [LFVX]
7063
6988
-
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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