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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.283326 (20 seq.)
>WENV181682720
OGOU01017080
[OGOU] human gut metagenome; faeces
2196
2121
-
Ala
TGC
[ENA]
¢þ
>WENV183723800
PDYJ01003398
[PDYJ] gut metagenome; fecal pellets
733
808
+
Ala
TGC
[ENA]
¢þ
>WENV170705138
LLEP01006773
[LLEP] bioreactor metagenome; day64 25degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
358
283
-
Ala
TGC
[ENA]
¢þ
>WENV170705233
LLEQ01000665
[LLEQ] bioreactor metagenome; day86 25degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
1421
1496
+
Ala
TGC
[ENA]
¢þ
>C181042972
CP020026
Betaproteobacteria
Rhodocyclaceae bacterium Thauera-like [CP020026]
861690
861765
+
Ala
TGC
-
¡û
>C181042997
CP020026
Betaproteobacteria
Rhodocyclaceae bacterium Thauera-like [CP020026]
2736764
2736689
-
Ala
TGC
-
¡û
>C181042999
CP020026
Betaproteobacteria
Rhodocyclaceae bacterium Thauera-like [CP020026]
2719501
2719426
-
Ala
TGC
-
¡û
>C181121179
CP025682
Betaproteobacteria
Pseudazoarcus pumilus SY39 [CP025682]
696225
696300
+
Ala
TGC
-
¡û
>C181121183
CP025682
Betaproteobacteria
Pseudazoarcus pumilus SY39 [CP025682]
968885
968960
+
Ala
TGC
-
¡û
>C181121189
CP025682
Betaproteobacteria
Pseudazoarcus pumilus SY39 [CP025682]
1475513
1475588
+
Ala
TGC
-
¡û
>C181165134
CP028425
Betaproteobacteria
Zoogloeaceae bacteirum Par-f-2 [CP028425]
799848
799923
+
Ala
TGC
-
¡û
>C181165163
CP028425
Betaproteobacteria
Zoogloeaceae bacteirum Par-f-2 [CP028425]
2628316
2628241
-
Ala
TGC
-
¡û
>C181165169
CP028425
Betaproteobacteria
Zoogloeaceae bacteirum Par-f-2 [CP028425]
2076681
2076606
-
Ala
TGC
-
¡û
>C181176786
CP029331
Betaproteobacteria
Thauera hydrothermalis GD-2 [CP029331]
932860
932935
+
Ala
TGC
-
¡û
>C181176800
CP029331
Betaproteobacteria
Thauera hydrothermalis GD-2 [CP029331]
2639948
2639873
-
Ala
TGC
-
¡û
>C181176806
CP029331
Betaproteobacteria
Thauera hydrothermalis GD-2 [CP029331]
2183948
2183873
-
Ala
TGC
-
¡û
>C191022870
CP022958
Betaproteobacteria
Azoarcus sp. DD4 [CP022958]
248729
248804
+
Ala
TGC
-
¡û
>C191022872
CP022958
Betaproteobacteria
Azoarcus sp. DD4 [CP022958]
949952
950027
+
Ala
TGC
-
¡û
>C191022887
CP022958
Betaproteobacteria
Azoarcus sp. DD4 [CP022958]
1661639
1661714
+
Ala
TGC
-
¡û
>C191022906
CP022958
Betaproteobacteria
Azoarcus sp. DD4 [CP022958]
4275375
4275300
-
Ala
TGC
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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