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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.283396 (45 seq.)
>W1710870348
LMKL01000001
Alphaproteobacteria
Sphingomonas sp. Leaf17 [LMKL]
812880
812804
-
Ile
GAT
[ENA]
¡û
>W1711253276
LYPP01000001
Alphaproteobacteria
Croceicoccus marinus [LYPP]
706547
706623
+
Ile
GAT
[ENA]
¡û
>W1711253296
LYPP01000001
Alphaproteobacteria
Croceicoccus marinus [LYPP]
2763380
2763304
-
Ile
GAT
[ENA]
¡û
>C171096144
CP019602
Alphaproteobacteria
Croceicoccus marinus E4A9 [CP019602]
706547
706623
+
Ile
GAT
-
¡û
>C171096164
CP019602
Alphaproteobacteria
Croceicoccus marinus E4A9 [CP019602]
2763380
2763304
-
Ile
GAT
-
¡û
>WENV181374761
OFQY01020065
[OFQY] wastewater metagenome; Exp Tend VB 10WW
1068
992
-
Ile
GAT
[ENA]
¢þ
>WENV181379309
OFRD01000394
[OFRD] wastewater metagenome; Exp Tend CN 100WW
13671
13595
-
Ile
GAT
[ENA]
¢þ
>WENV181386367
OFRL01002855
[OFRL] wastewater metagenome; Lake Maggiore Cannobio
1457
1533
+
Ile
GAT
[ENA]
¢þ
>WENV181399955
OFSF01000466
[OFSF] wastewater metagenome; Exp Tend VB 100WW
10691
10767
+
Ile
GAT
[ENA]
¢þ
>WENV182547885
OJBU01001117
[OJBU] seawater metagenome; Sea water
2514
2590
+
Ile
GAT
[ENA]
¢þ
>WENV182563913
OJED01002508
[OJED] seawater metagenome; Sea water
2298
2222
-
Ile
GAT
[ENA]
¢þ
>C191154742
CP037913
Alphaproteobacteria
Sphingomonas sp. AAP5 [CP037913]
907450
907526
+
Ile
GAT
-
¡û
>C191154758
CP037913
Alphaproteobacteria
Sphingomonas sp. AAP5 [CP037913]
3706409
3706485
+
Ile
GAT
-
¡û
>C191154766
CP037913
Alphaproteobacteria
Sphingomonas sp. AAP5 [CP037913]
3117167
3117091
-
Ile
GAT
-
¡û
>W1911767965
QXFL01000004
Alphaproteobacteria
Aurantiacibacter zhengii V18 [QXFL]
322387
322311
-
Ile
GAT
[ENA]
¡û
>W1911768002
QXFM01000071
Alphaproteobacteria
Aurantiacibacter xanthus CCTCC AB 2015396 [QXFM]
22607
22683
+
Ile
GAT
[ENA]
¡û
>W1911768020
QXFM01000118
Alphaproteobacteria
Aurantiacibacter xanthus CCTCC AB 2015396 [QXFM]
42621
42545
-
Ile
GAT
[ENA]
¡û
>W1911768026
QXFM01000133
Alphaproteobacteria
Aurantiacibacter xanthus CCTCC AB 2015396 [QXFM]
36104
36180
+
Ile
GAT
[ENA]
¡û
>W1911768035
QXFM01000141
Alphaproteobacteria
Aurantiacibacter xanthus CCTCC AB 2015396 [QXFM]
33906
33830
-
Ile
GAT
[ENA]
¡û
>W1810475066
QAIS01000522
Alphaproteobacteria
Sphingomonas sp. HMWF008 [QAIS]
2218
2294
+
Ile
GAT
[ENA]
¡û
>SRA1014213
SRR023845.41383
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
255
179
-
Ile
GAT
[SRA]
>SRA1014305
SRR023845.82783
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
96
20
-
Ile
GAT
[SRA]
>SRA1014652
SRR023845.242059
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
90
14
-
Ile
GAT
[SRA]
>SRA1014845
SRR023845.340814
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
228
152
-
Ile
GAT
[SRA]
>SRA1015325
SRR023846.18449
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
114
38
-
Ile
GAT
[SRA]
>SRA1015372
SRR023846.32573
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
163
239
+
Ile
GAT
[SRA]
>SRA1015432
SRR023846.54250
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
163
239
+
Ile
GAT
[SRA]
>SRA1015439
SRR023846.58136
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
136
212
+
Ile
GAT
[SRA]
>SRA1015653
SRR023846.146133
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
170
246
+
Ile
GAT
[SRA]
>SRA1015679
SRR023846.155789
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
163
239
+
Ile
GAT
[SRA]
>SRA1015808
SRR023846.208070
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
208
132
-
Ile
GAT
[SRA]
>SRA1016107
SRR023846.350550
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
136
212
+
Ile
GAT
[SRA]
>SRA1016190
SRR023846.392055
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
163
239
+
Ile
GAT
[SRA]
>SRA1016329
SRR023846.454816
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
163
239
+
Ile
GAT
[SRA]
>SRA1016472
SRR023846.514987
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
135
211
+
Ile
GAT
[SRA]
>W1511352592
JROH01000090
Alphaproteobacteria
Sphingomonas sp. 37zxx [JROH]
2194
2270
+
Ile
GAT
[ENA]
¡û
>W1511361491
JSBN01000049
Alphaproteobacteria
Sphingomonas sp. Ant H11 [JSBN]
10270
10346
+
Ile
GAT
[ENA]
¡û
>W1511591720
LBHU01000001
Alphaproteobacteria
Aurantiacibacter marinus HWDM-33 [LBHU]
1301058
1301134
+
Ile
GAT
[ENA]
¡û
>W1511629878
LDCP01000001
Alphaproteobacteria
Aurantiacibacter marinus KCTC 23554 [LDCP]
37039
36963
-
Ile
GAT
[ENA]
¡û
>W121033259
AHIR01000060
Alphaproteobacteria
Sphingomonas echinoides ATCC 14820 [AHIR]
4117
4041
-
Ile
GAT
[ENA]
¡û
>W121033304
AHIS01000152
Alphaproteobacteria
Sphingomonas sp. PAMC 26605 [AHIS]
3732
3656
-
Ile
GAT
[ENA]
¡û
>W121046827
AIDW01000026
Alphaproteobacteria
Sphingomonas sp. PAMC 26621 [AIDW]
508
432
-
Ile
GAT
[ENA]
¡û
>W1610732694
LMKL01000001
Alphaproteobacteria
Sphingomonas sp. Leaf17 [LMKL]
812880
812804
-
Ile
GAT
[ENA]
¡û
>W1611017813
LYPP01000001
Alphaproteobacteria
Croceicoccus marinus [LYPP]
706547
706623
+
Ile
GAT
[ENA]
¡û
>W1611017833
LYPP01000001
Alphaproteobacteria
Croceicoccus marinus [LYPP]
2763380
2763304
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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