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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.283398 (61 seq.)
>W1711072482
LSHQ01000026
Alphaproteobacteria
Sphingomonas sp. CCH5-A5 [LSHQ]
129602
129527
-
Ala
TGC
[ENA]
¡û
>W1711072788
LSHX01000052
Alphaproteobacteria
Sphingomonas sp. CCH21-G11 [LSHX]
129603
129528
-
Ala
TGC
[ENA]
¡û
>W1711073043
LSIE01000073
Alphaproteobacteria
Sphingomonas sp. CCH16-B10 [LSIE]
10228
10153
-
Ala
TGC
[ENA]
¡û
>W1711073997
LSJC01000213
Alphaproteobacteria
Sphingomonas sp. CCH20-B6 [LSJC]
21834
21759
-
Ala
TGC
[ENA]
¡û
>W1711075114
LSKD01000014
Alphaproteobacteria
Sphingomonas sp. CCH19-C6 [LSKD]
25919
25994
+
Ala
TGC
[ENA]
¡û
>W1711075267
LSKG01000111
Alphaproteobacteria
Sphingomonas sp. CCH15-F11 [LSKG]
21831
21756
-
Ala
TGC
[ENA]
¡û
>W1711075358
LSKI01000132
Alphaproteobacteria
Sphingomonas sp. CCH18-H6 [LSKI]
26009
26084
+
Ala
TGC
[ENA]
¡û
>W1711075630
LSKO01002278
Alphaproteobacteria
Sphingomonas sp. CCH15-A1 [LSKO]
21836
21761
-
Ala
TGC
[ENA]
¡û
>W1711075643
LSKP01000004
Alphaproteobacteria
Sphingomonas sp. CCH13-B11 [LSKP]
21836
21761
-
Ala
TGC
[ENA]
¡û
>W1711220319
LXQI01000008
Alphaproteobacteria
Erythrobacter sp. ANT-B3C2 [LXQI]
302512
302437
-
Ala
TGC
[ENA]
¡û
>W131237461
AUOM01000143
Alphaproteobacteria
alpha proteobacterium JGI 0001002-C12 [AUOM]
15865
15790
-
Ala
TGC
[ENA]
¡û
>W1711437788
MIPT01000001
Alphaproteobacteria
Sphingomonas haloaromaticamans [MIPT]
4293577
4293502
-
Ala
TGC
[ENA]
¡û
>W1711437811
MIPT01000001
Alphaproteobacteria
Sphingomonas haloaromaticamans [MIPT]
3869
3794
-
Ala
TGC
[ENA]
¡û
>W1712049860
NFUR01000005
Alphaproteobacteria
Sphingomonas sp. IBVSS2 [NFUR]
251055
251130
+
Ala
TGC
[ENA]
¡û
>WENV180100123
OAOK01000001
[OAOK] sediment metagenome; sediment
1345
1420
+
Ala
TGC
[ENA]
¢þ
>WENV180100416
OAON01001105
[OAON] sediment metagenome; sediment
2769
2694
-
Ala
TGC
[ENA]
¢þ
>WENV180355053
OBNG01000990
[OBNG] sediment metagenome; sediment
2567
2642
+
Ala
TGC
[ENA]
¢þ
>WENV180355307
OBNH01000541
[OBNH] sediment metagenome; sediment
3778
3703
-
Ala
TGC
[ENA]
¢þ
>WENV180355546
OBNI01000541
[OBNI] sediment metagenome; sediment
3778
3703
-
Ala
TGC
[ENA]
¢þ
>WENV180355845
OBNJ01001201
[OBNJ] sediment metagenome; sediment
2257
2182
-
Ala
TGC
[ENA]
¢þ
>WENV180356185
OBNK01001109
[OBNK] sediment metagenome; sediment
3778
3703
-
Ala
TGC
[ENA]
¢þ
>WENV181168764
OEIU01759108
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
198
123
-
Ala
TGC
[ENA]
¢þ
>WENV181223531
OFDC01028164
[OFDC] hot springs metagenome; Water
842
767
-
Ala
TGC
[ENA]
¢þ
>WENV181227838
OFDN01056622
[OFDN] hot springs metagenome; Water
659
584
-
Ala
TGC
[ENA]
¢þ
>WENV183726170
PJQF01100507
[PJQF] biofilm metagenome; biomolecule (vanillin) treated reverse osmosis membrane biofilm
342
267
-
Ala
TGC
[ENA]
¢þ
>WENV183727971
PJTP01010678
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
359
434
+
Ala
TGC
[ENA]
¢þ
>WENV183748170
PPFU01016704
[PPFU] hypolithon metagenome; Antarctic Hypolithon
611
536
-
Ala
TGC
[ENA]
¢þ
>WENV170010950
APMI01036059
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
513
588
+
Ala
TGC
[ENA]
¢þ
>WENV170229241
CEQG01093044
[CEQG] marine metagenome genome assembly TARA_076_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
646
571
-
Ala
TGC
[ENA]
¢þ
>WENV170645682
JPYU01002623
[JPYU] wastewater metagenome; domestic wastewater sediment without any treatment
80
155
+
Ala
TGC
[ENA]
¢þ
>WENV170714104
LNFM01054462
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
369
444
+
Ala
TGC
[ENA]
¢þ
>WENV170989766
MWVZ01096499
[MWVZ] soil metagenome; MS6-5 sample; Antarctic (ecotone) soil
223
148
-
Ala
TGC
[ENA]
¢þ
>WENV170991116
MWWA01115434
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
390
315
-
Ala
TGC
[ENA]
¢þ
>WENV170991138
MWWA01120044
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
277
352
+
Ala
TGC
[ENA]
¢þ
>WENV170991159
MWWA01125294
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
154
229
+
Ala
TGC
[ENA]
¢þ
>WENV170991320
MWWA01163215
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
219
294
+
Ala
TGC
[ENA]
¢þ
>WENV170991443
MWWA01199433
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
170
95
-
Ala
TGC
[ENA]
¢þ
>WENV170991549
MWWA01237039
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
331
256
-
Ala
TGC
[ENA]
¢þ
>WENV170992005
MWWA01406000
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
298
223
-
Ala
TGC
[ENA]
¢þ
>C191144168
CP035501
Alphaproteobacteria
Sphingosinicella sp. BN140058 [CP035501]
5727081
5727006
-
Ala
TGC
-
¡û
>C191144183
CP035501
Alphaproteobacteria
Sphingosinicella sp. BN140058 [CP035501]
2114582
2114507
-
Ala
TGC
-
¡û
>C191144189
CP035501
Alphaproteobacteria
Sphingosinicella sp. BN140058 [CP035501]
540798
540723
-
Ala
TGC
-
¡û
>W09133980
ACQU01000012
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ATCC 10988 [ACQU]
20773
20848
+
Ala
TGC
[ENA]
¡û
>C141006106
CP006644
Alphaproteobacteria
Sphingomonas sanxanigenens DSM 19645 = NX02 [CP006644]
5476845
5476920
+
Ala
TGC
[Ensembl]
¡û
>C141006111
CP006644
Alphaproteobacteria
Sphingomonas sanxanigenens DSM 19645 = NX02 [CP006644]
6049712
6049787
+
Ala
TGC
[Ensembl]
¡û
>C141006125
CP006644
Alphaproteobacteria
Sphingomonas sanxanigenens DSM 19645 = NX02 [CP006644]
3979664
3979589
-
Ala
TGC
[Ensembl]
¡û
>W1910548740
FZOS01000066
Alphaproteobacteria
Sphingomonas laterariae LNB2 [FZOS]
2103
2178
+
Ala
TGC
[ENA]
¡û
>W1911391033
NWBU01000001
Alphaproteobacteria
Sphingomonas oleivorans FW-11 [NWBU]
3602
3527
-
Ala
TGC
[ENA]
¡û
>W1810390313
PXYI01000021
Alphaproteobacteria
Sphingomonas deserti GL-C-18 [PXYI]
2278
2353
+
Ala
TGC
[ENA]
¡û
>W1810594391
QFZL01000009
Alphaproteobacteria
Sphingosinithalassobacter portus FM6 [QFZL]
86078
86003
-
Ala
TGC
[ENA]
¡û
>W1610911742
LSHQ01000026
Alphaproteobacteria
Sphingomonas sp. CCH5-A5 [LSHQ]
129602
129527
-
Ala
TGC
[ENA]
¡û
>W1610912048
LSHX01000052
Alphaproteobacteria
Sphingomonas sp. CCH21-G11 [LSHX]
129603
129528
-
Ala
TGC
[ENA]
¡û
>W1610912348
LSIE01000073
Alphaproteobacteria
Sphingomonas sp. CCH16-B10 [LSIE]
10228
10153
-
Ala
TGC
[ENA]
¡û
>W1610913302
LSJC01000213
Alphaproteobacteria
Sphingomonas sp. CCH20-B6 [LSJC]
21834
21759
-
Ala
TGC
[ENA]
¡û
>W1610914419
LSKD01000014
Alphaproteobacteria
Sphingomonas sp. CCH19-C6 [LSKD]
25919
25994
+
Ala
TGC
[ENA]
¡û
>W1610914572
LSKG01000111
Alphaproteobacteria
Sphingomonas sp. CCH15-F11 [LSKG]
21831
21756
-
Ala
TGC
[ENA]
¡û
>W1610914663
LSKI01000132
Alphaproteobacteria
Sphingomonas sp. CCH18-H6 [LSKI]
26009
26084
+
Ala
TGC
[ENA]
¡û
>W1610914935
LSKO01002278
Alphaproteobacteria
Sphingomonas sp. CCH15-A1 [LSKO]
21836
21761
-
Ala
TGC
[ENA]
¡û
>W1610914948
LSKP01000004
Alphaproteobacteria
Sphingomonas sp. CCH13-B11 [LSKP]
21836
21761
-
Ala
TGC
[ENA]
¡û
>W1611004791
LXQI01000008
Alphaproteobacteria
Erythrobacter sp. ANT-B3C2 [LXQI]
302512
302437
-
Ala
TGC
[ENA]
¡û
>W1710562096
FOOR01000046
Alphaproteobacteria
Novosphingobium sp. CF614 [FOOR]
2144
2219
+
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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