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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.283400 (63 seq.)
>W1711018584
LQXA01000053
Actinomycetota
Clavibacter michiganensis subsp. tessellarius [LQXA]
115647
115572
-
His
GTG
[ENA]
¡û
>W1711079590
LSOE01000003
Actinomycetota
Clavibacter nebraskensis subsp. nebraskensis [LSOE]
101409
101484
+
His
GTG
[ENA]
¡û
>W1711357181
MDHB01000002
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHB]
499473
499548
+
His
GTG
[ENA]
¡û
>W1711357240
MDHC01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHC]
1606430
1606355
-
His
GTG
[ENA]
¡û
>W1711357246
MDHD01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHD]
20384
20459
+
His
GTG
[ENA]
¡û
>W1711357291
MDHE01000029
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHE]
9518
9593
+
His
GTG
[ENA]
¡û
>W1711357352
MDHF01000099
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHF]
2952
2877
-
His
GTG
[ENA]
¡û
>W1711357403
MDHG01000002
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHG]
3187439
3187364
-
His
GTG
[ENA]
¡û
>W1711357449
MDHH01000003
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHH]
3450
3525
+
His
GTG
[ENA]
¡û
>W1711357463
MDHH01000006
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHH]
2841
2766
-
His
GTG
[ENA]
¡û
>W1711357497
MDHI01000004
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHI]
1178856
1178781
-
His
GTG
[ENA]
¡û
>W1711357554
MDHJ01000001
Actinomycetota
Clavibacter michiganensis [MDHJ]
1503562
1503487
-
His
GTG
[ENA]
¡û
>W1711357567
MDHK01000020
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHK]
82283
82358
+
His
GTG
[ENA]
¡û
>W1711357645
MDHL01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHL]
1637912
1637837
-
His
GTG
[ENA]
¡û
>W1711357689
MDHM01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHM]
1616679
1616604
-
His
GTG
[ENA]
¡û
>W1711360690
MDJW01000007
Actinomycetota
Clavibacter michiganensis [MDJW]
45521
45596
+
His
GTG
[ENA]
¡û
>W1711360756
MDJX01000244
Actinomycetota
Clavibacter michiganensis [MDJX]
17001
16926
-
His
GTG
[ENA]
¡û
>W1711360801
MDJY01000049
Actinomycetota
Clavibacter michiganensis [MDJY]
3775
3700
-
His
GTG
[ENA]
¡û
>W1711360847
MDJZ01000015
Actinomycetota
Clavibacter michiganensis [MDJZ]
198944
198869
-
His
GTG
[ENA]
¡û
>C006171
AM711867
Actinomycetota
Clavibacter michiganensis subsp. michiganensis NCPPB 382 [AM711867]
1632309
1632234
-
His
GTG
[Ensembl]
¡û
>w013955
AAOB01000003
Actinomycetota
marine actinobacterium PHSC20C1 [AAOB]
259212
259289
+
His
GTG
[ENA]
¡û
>WENV180017044
FSWJ01000767
[FSWJ] metagenome; soil
21928
22003
+
His
GTG
[ENA]
¢þ
>W141212794
AZQZ01000045
Actinomycetota
Clavibacter michiganensis michiganensis LMG 26808 [AZQZ]
610511
610586
+
His
GTG
[ENA]
¡û
>C08003567
AM849034
Actinomycetota
Clavibacter michiganensis subsp. sepedonicus ATCC 33113 [AM849034]
1619523
1619451
-
His
GTG
[Ensembl]
¡û
>WENV183746661
POYE01060313
[POYE] biofilm metagenome; steel pipe from biofilm reactor
6453
6528
+
His
GTG
[ENA]
¢þ
>WENV170011344
APMI01058607
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
317
392
+
His
GTG
[ENA]
¢þ
>WENV170700597
LIDZ01015689
[LIDZ] food metagenome; wine grapes on drying loft during traditional withering process
5079
5004
-
His
GTG
[ENA]
¢þ
>C181048885
CP021034
Actinomycetota
Clavibacter michiganensis subsp. insidiosus R1-3 [CP021034]
1804517
1804592
+
His
GTG
-
¡û
>C181048952
CP021038
Actinomycetota
Clavibacter michiganensis subsp. insidiosus ATCC 10253 [CP021038]
1385454
1385379
-
His
GTG
-
¡û
>W1910839691
MZMM01000001
Actinomycetota
Clavibacter sepedonicus subsp. sepedonicus CFIA-Cs3N [MZMM]
620045
619970
-
His
GTG
[ENA]
¡û
>W1910839734
MZMN01000003
Actinomycetota
Clavibacter sepedonicus subsp. sepedonicus CFIA-CsR14 [MZMN]
235842
235767
-
His
GTG
[ENA]
¡û
>W1910839751
MZMO01000001
Actinomycetota
Clavibacter michiganensis subsp. insidiosus LMG 3663 [MZMO]
2047258
2047333
+
His
GTG
[ENA]
¡û
>W1910839799
MZMP01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis LMG 7333 [MZMP]
2731756
2731831
+
His
GTG
[ENA]
¡û
>W1910839843
MZMQ01000001
Actinomycetota
Clavibacter michiganensis subsp. tessellarius ATCC 33566 [MZMQ]
2857555
2857630
+
His
GTG
[ENA]
¡û
>W1911497889
OCST01000004
Actinomycetota
Salinibacterium xinjiangense CGMCC 1.05381 [OCST]
413994
414069
+
His
GTG
[ENA]
¡û
>W1911748145
QWDZ01000041
Actinomycetota
Clavibacter michiganensis CFBP 1195 [QWDZ]
3001
2926
-
His
GTG
[ENA]
¡û
>W1911748176
QWEA01000066
Actinomycetota
Clavibacter michiganensis CFBP 6488 [QWEA]
5630
5705
+
His
GTG
[ENA]
¡û
>W1911748234
QWEB01000051
Actinomycetota
Clavibacter michiganensis CFBP 7491 [QWEB]
9568
9643
+
His
GTG
[ENA]
¡û
>W1911748276
QWEC01000060
Actinomycetota
Clavibacter michiganensis CFBP 7493 [QWEC]
9549
9624
+
His
GTG
[ENA]
¡û
>W1911748322
QWED01000104
Actinomycetota
Clavibacter nebraskensis CFBP 7577 [QWED]
659
584
-
His
GTG
[ENA]
¡û
>W1911748349
QWEE01000016
Actinomycetota
Clavibacter californiensis subsp. californiensis CFBP 8216 [QWEE]
19090
19165
+
His
GTG
[ENA]
¡û
>W1911749592
QWGS01000239
Actinomycetota
Clavibacter phaseoli subsp. chilensis CFBP 8217 [QWGS]
2485
2560
+
His
GTG
[ENA]
¡û
>W1911749636
QWGT01000134
Actinomycetota
Clavibacter lycopersici CFBP 8615 [QWGT]
5633
5708
+
His
GTG
[ENA]
¡û
>W1911749665
QWGU01000087
Actinomycetota
Clavibacter lycopersici CFBP 8616 [QWGU]
5415
5490
+
His
GTG
[ENA]
¡û
>W1911749719
QWGV01000104
Actinomycetota
Clavibacter phaseoli subsp. phaseoli CFBP 8627 [QWGV]
5499
5574
+
His
GTG
[ENA]
¡û
>W1810277257
PSTR01000013
Actinomycetota
Clavibacter michiganensis AY1B2 [PSTR]
28094
28019
-
His
GTG
[ENA]
¡û
>W1810277266
PSTS01000001
Actinomycetota
Clavibacter michiganensis AY1A6 [PSTS]
103418
103343
-
His
GTG
[ENA]
¡û
>W1810277431
PSTV01000028
Actinomycetota
Clavibacter michiganensis Z002 [PSTV]
73663
73738
+
His
GTG
[ENA]
¡û
>W1810277466
PSTW01000019
Actinomycetota
Clavibacter michiganensis Z001 [PSTW]
13524
13449
-
His
GTG
[ENA]
¡û
>W1810282061
PSXY01000001
Actinomycetota
Clavibacter michiganensis AY1B3 [PSXY]
169497
169422
-
His
GTG
[ENA]
¡û
>W1810364699
PVTL01000001
Actinomycetota
Glaciihabitans tibetensis CGMCC 1.12484 [PVTL]
186547
186472
-
His
GTG
[ENA]
¡û
>W1810476303
QANL01000003
Actinomycetota
Planctomonas deserti 13S1-3 [QANL]
155900
155825
-
His
GTG
[ENA]
¡û
>W1810860799
QTTK01000002
Actinomycetota
Clavibacter sp. 199 [QTTK]
391164
391089
-
His
GTG
[ENA]
¡û
>C151075668
CP011043
Actinomycetota
Clavibacter michiganensis subsp. insidiosus R1-1 [CP011043]
1313401
1313326
-
His
GTG
[Ensembl]
¡û
>C151095726
CP012573
Actinomycetota
Clavibacter capsici PF008 [CP012573]
1443396
1443321
-
His
GTG
-
¡û
>W1511352456
JROD01000012
Actinomycetota
Clavibacter michiganensis CF11 [JROD]
45690
45615
-
His
GTG
[ENA]
¡û
>W1511570093
LAKL01000016
Actinomycetota
Clavibacter nebraskensis subsp. nebraskensis DOAB 397 [LAKL]
91040
90965
-
His
GTG
[ENA]
¡û
>W121043543
AHWA01000004
Actinomycetota
Salinibacterium sp. PAMC 21357 [AHWA]
14851
14926
+
His
GTG
[ENA]
¡û
>C131019558
HE614873
Actinomycetota
Clavibacter nebraskensis NCPPB 2581 type strain: NCPPB 2581 [HE614873]
1470424
1470349
-
His
GTG
[Ensembl]
¡û
>W1610867060
LQXA01000053
Actinomycetota
Clavibacter michiganensis subsp. tessellarius [LQXA]
115647
115572
-
His
GTG
[ENA]
¡û
>W1610918500
LSOE01000003
Actinomycetota
Clavibacter nebraskensis subsp. nebraskensis [LSOE]
101409
101484
+
His
GTG
[ENA]
¡û
>WENV078463
AAGA01017141
Fossil microbial community from Whale Fall (the West Antarctic Peninsula Shelf)
255
332
+
His
GTG
[ENA]
>W1710604661
FVZG01000001
Actinomycetota
Clavibacter michiganensis [FVZG]
1407284
1407209
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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