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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.283406 (52 seq.)
>W1711018558
LQXA01000028
Actinomycetota
Clavibacter michiganensis subsp. tessellarius [LQXA]
42625
42700
+
Thr
TGT
[ENA]
¡û
>W1711079622
LSOE01000018
Actinomycetota
Clavibacter nebraskensis subsp. nebraskensis [LSOE]
54845
54772
-
Thr
TGT
[ENA]
¡û
>W1711357173
MDHB01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHB]
607045
606972
-
Thr
TGT
[ENA]
¡û
>W1711357230
MDHC01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHC]
2777692
2777619
-
Thr
TGT
[ENA]
¡û
>W1711357254
MDHD01000039
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHD]
15053
15126
+
Thr
TGT
[ENA]
¡û
>W1711357315
MDHE01000292
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHE]
14502
14575
+
Thr
TGT
[ENA]
¡û
>W1711357375
MDHF01000296
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHF]
17745
17818
+
Thr
TGT
[ENA]
¡û
>W1711357414
MDHG01000002
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHG]
1141825
1141752
-
Thr
TGT
[ENA]
¡û
>W1711357438
MDHH01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHH]
452587
452514
-
Thr
TGT
[ENA]
¡û
>W1711357515
MDHI01000024
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHI]
20263
20190
-
Thr
TGT
[ENA]
¡û
>W1711357545
MDHJ01000001
Actinomycetota
Clavibacter michiganensis [MDHJ]
2764407
2764332
-
Thr
TGT
[ENA]
¡û
>W1711357599
MDHK01000096
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHK]
48357
48430
+
Thr
TGT
[ENA]
¡û
>W1711357635
MDHL01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHL]
2822463
2822390
-
Thr
TGT
[ENA]
¡û
>W1711357679
MDHM01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHM]
2774392
2774319
-
Thr
TGT
[ENA]
¡û
>W1711360686
MDJW01000004
Actinomycetota
Clavibacter michiganensis [MDJW]
65141
65068
-
Thr
TGT
[ENA]
¡û
>W1711360767
MDJX01000303
Actinomycetota
Clavibacter michiganensis [MDJX]
26591
26666
+
Thr
TGT
[ENA]
¡û
>W1711360794
MDJY01000044
Actinomycetota
Clavibacter michiganensis [MDJY]
69206
69281
+
Thr
TGT
[ENA]
¡û
>W1711360839
MDJZ01000011
Actinomycetota
Clavibacter michiganensis [MDJZ]
64361
64434
+
Thr
TGT
[ENA]
¡û
>C006161
AM711867
Actinomycetota
Clavibacter michiganensis subsp. michiganensis NCPPB 382 [AM711867]
2798397
2798325
-
Thr
TGT
[Ensembl]
¡û
>W141212787
AZQZ01000023
Actinomycetota
Clavibacter michiganensis michiganensis LMG 26808 [AZQZ]
10764
10691
-
Thr
TGT
[ENA]
¡û
>C08003558
AM849034
Actinomycetota
Clavibacter michiganensis subsp. sepedonicus ATCC 33113 [AM849034]
2896710
2896783
+
Thr
TGT
[Ensembl]
¡û
>C181048875
CP021034
Actinomycetota
Clavibacter michiganensis subsp. insidiosus R1-3 [CP021034]
638244
638317
+
Thr
TGT
-
¡û
>C181048942
CP021038
Actinomycetota
Clavibacter michiganensis subsp. insidiosus ATCC 10253 [CP021038]
2684764
2684691
-
Thr
TGT
-
¡û
>W1910839663
MZMM01000001
Actinomycetota
Clavibacter sepedonicus subsp. sepedonicus CFIA-Cs3N [MZMM]
1897284
1897357
+
Thr
TGT
[ENA]
¡û
>W1910839702
MZMN01000003
Actinomycetota
Clavibacter sepedonicus subsp. sepedonicus CFIA-CsR14 [MZMN]
1426573
1426646
+
Thr
TGT
[ENA]
¡û
>W1910839741
MZMO01000001
Actinomycetota
Clavibacter michiganensis subsp. insidiosus LMG 3663 [MZMO]
750173
750246
+
Thr
TGT
[ENA]
¡û
>W1910839789
MZMP01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis LMG 7333 [MZMP]
1573810
1573883
+
Thr
TGT
[ENA]
¡û
>W1910839834
MZMQ01000001
Actinomycetota
Clavibacter michiganensis subsp. tessellarius ATCC 33566 [MZMQ]
1683462
1683535
+
Thr
TGT
[ENA]
¡û
>W1911748141
QWDZ01000025
Actinomycetota
Clavibacter michiganensis CFBP 1195 [QWDZ]
14361
14434
+
Thr
TGT
[ENA]
¡û
>W1911748182
QWEA01000105
Actinomycetota
Clavibacter michiganensis CFBP 6488 [QWEA]
4715
4788
+
Thr
TGT
[ENA]
¡û
>W1911748220
QWEB01000030
Actinomycetota
Clavibacter michiganensis CFBP 7491 [QWEB]
4683
4756
+
Thr
TGT
[ENA]
¡û
>W1911748258
QWEC01000007
Actinomycetota
Clavibacter michiganensis CFBP 7493 [QWEC]
16239
16312
+
Thr
TGT
[ENA]
¡û
>W1911748326
QWED01000128
Actinomycetota
Clavibacter nebraskensis CFBP 7577 [QWED]
4723
4796
+
Thr
TGT
[ENA]
¡û
>W1911748345
QWEE01000012
Actinomycetota
Clavibacter californiensis subsp. californiensis CFBP 8216 [QWEE]
13420
13493
+
Thr
TGT
[ENA]
¡û
>W1911749568
QWGS01000023
Actinomycetota
Clavibacter phaseoli subsp. chilensis CFBP 8217 [QWGS]
4664
4737
+
Thr
TGT
[ENA]
¡û
>W1911749623
QWGT01000051
Actinomycetota
Clavibacter lycopersici CFBP 8615 [QWGT]
9687
9614
-
Thr
TGT
[ENA]
¡û
>W1911749655
QWGU01000027
Actinomycetota
Clavibacter lycopersici CFBP 8616 [QWGU]
9777
9704
-
Thr
TGT
[ENA]
¡û
>W1911749698
QWGV01000017
Actinomycetota
Clavibacter phaseoli subsp. phaseoli CFBP 8627 [QWGV]
4674
4747
+
Thr
TGT
[ENA]
¡û
>W1810277229
PSTR01000002
Actinomycetota
Clavibacter michiganensis AY1B2 [PSTR]
252340
252267
-
Thr
TGT
[ENA]
¡û
>W1810277275
PSTS01000005
Actinomycetota
Clavibacter michiganensis AY1A6 [PSTS]
111267
111341
+
Thr
TGT
[ENA]
¡û
>W1810277428
PSTV01000023
Actinomycetota
Clavibacter michiganensis Z002 [PSTV]
166879
166806
-
Thr
TGT
[ENA]
¡û
>W1810277481
PSTW01000027
Actinomycetota
Clavibacter michiganensis Z001 [PSTW]
167207
167134
-
Thr
TGT
[ENA]
¡û
>W1810282087
PSXY01000014
Actinomycetota
Clavibacter michiganensis AY1B3 [PSXY]
20511
20437
-
Thr
TGT
[ENA]
¡û
>W1810860806
QTTK01000004
Actinomycetota
Clavibacter sp. 199 [QTTK]
23231
23157
-
Thr
TGT
[ENA]
¡û
>C151075657
CP011043
Actinomycetota
Clavibacter michiganensis subsp. insidiosus R1-1 [CP011043]
2706549
2706476
-
Thr
TGT
[Ensembl]
¡û
>C151095717
CP012573
Actinomycetota
Clavibacter capsici PF008 [CP012573]
2553861
2553786
-
Thr
TGT
-
¡û
>W1511352458
JROD01000015
Actinomycetota
Clavibacter michiganensis CF11 [JROD]
69493
69568
+
Thr
TGT
[ENA]
¡û
>W1511570103
LAKL01000025
Actinomycetota
Clavibacter nebraskensis subsp. nebraskensis DOAB 397 [LAKL]
57661
57588
-
Thr
TGT
[ENA]
¡û
>C131019548
HE614873
Actinomycetota
Clavibacter nebraskensis NCPPB 2581 type strain: NCPPB 2581 [HE614873]
2572800
2572727
-
Thr
TGT
[Ensembl]
¡û
>W1610867034
LQXA01000028
Actinomycetota
Clavibacter michiganensis subsp. tessellarius [LQXA]
42625
42700
+
Thr
TGT
[ENA]
¡û
>W1610918532
LSOE01000018
Actinomycetota
Clavibacter nebraskensis subsp. nebraskensis [LSOE]
54845
54772
-
Thr
TGT
[ENA]
¡û
>W1710604680
FVZG01000004
Actinomycetota
Clavibacter michiganensis [FVZG]
172260
172187
-
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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