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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.283419 (87 seq.)
>W1711120577
LUGK01000021
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [LUGK]
11666
11738
+
Thr
GGT
[ENA]
¡û
>W1711167789
LVWX01000010
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [LVWX]
55914
55842
-
Thr
GGT
[ENA]
¡û
>W1711167866
LVWY01000009
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [LVWY]
56200
56128
-
Thr
GGT
[ENA]
¡û
>W1711185035
LWNA01000085
Bacillota
Lactobacillus sp. HMSC08B12 [LWNA]
20249
20321
+
Thr
GGT
[ENA]
¡û
>W1711665871
MRBF01000002
Bacillota
Lactobacillus delbrueckii subsp. lactis [MRBF]
651838
651910
+
Thr
GGT
[ENA]
¡û
>W1711678776
MRUN01000007
Bacillota
Lactobacillus delbrueckii subsp. lactis DSM 20072 [MRUN]
39199
39127
-
Thr
GGT
[ENA]
¡û
>W1711678797
MRUN01000012
Bacillota
Lactobacillus delbrueckii subsp. lactis DSM 20072 [MRUN]
1962045
1962117
+
Thr
GGT
[ENA]
¡û
>C171048723
CP016393
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus ND04 [CP016393]
751955
751883
-
Thr
GGT
-
¡û
>C171074217
CP018156
Bacillota
Lactobacillus delbrueckii subsp. lactis KCTC 3035 [CP018156]
1336915
1336843
-
Thr
GGT
-
¡û
>C171075527
CP018215
Bacillota
Lactobacillus delbrueckii subsp. lactis KCCM 34717 [CP018215]
1579508
1579436
-
Thr
GGT
-
¡û
>C171075558
CP018216
Bacillota
Lactobacillus delbrueckii subsp. delbrueckii KCTC 13731 [CP018216]
233167
233239
+
Thr
GGT
-
¡û
>C171075642
CP018217
Bacillota
Lactobacillus delbrueckii subsp. sunkii JCM 17838 [CP018217]
255187
255259
+
Thr
GGT
-
¡û
>C171075737
CP018218
Bacillota
Lactobacillus delbrueckii subsp. jakobsenii ZN7a-9 = DSM 26046 [CP018218]
590731
590803
+
Thr
GGT
-
¡û
>C171081314
CP018614
Bacillota
Lactobacillus delbrueckii subsp. indicus JCM 15610 [CP018614]
219068
219140
+
Thr
GGT
-
¡û
>C171089389
CP019120
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus DSM 20080 [CP019120]
212092
212164
+
Thr
GGT
-
¡û
>C171116185
CP021136
Bacillota
Lactobacillus delbrueckii subsp. delbrueckii TUA4408L [CP021136]
1304467
1304539
+
Thr
GGT
-
¡û
>W131204310
ATBQ01000031
Bacillota
Lactobacillus delbrueckii subsp. lactis CRL581 [ATBQ]
376
304
-
Thr
GGT
[ENA]
¡û
>C011345
CR954253
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002 [CR954253]
220785
220857
+
Thr
GGT
[Ensembl]
¡û
>C011498
CP000412
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 [CP000412]
212648
212720
+
Thr
GGT
[Ensembl]
¡û
>W141037875
ALPY01000017
Bacillota
Lactobacillus delbrueckii ZN7a-9 [ALPY]
114993
115065
+
Thr
GGT
[ENA]
¡û
>WENV181660436
OGOF01034401
[OGOF] human gut metagenome; faeces
520
592
+
Thr
GGT
[ENA]
¢þ
>WENV181723794
OGPW01025498
[OGPW] human gut metagenome; faeces
377
305
-
Thr
GGT
[ENA]
¢þ
>W141228017
BALP01000031
Bacillota
Lactobacillus delbrueckii subsp. delbrueckii JCM 1012 [BALP]
377
305
-
Thr
GGT
[ENA]
¡û
>WENV182349998
OIBE01001435
[OIBE] human gut metagenome; feces
3598
3526
-
Thr
GGT
[ENA]
¢þ
>WENV182370037
OICS01001107
[OICS] human gut metagenome; feces
6009
5937
-
Thr
GGT
[ENA]
¢þ
>WENV182381991
OIDR01003599
[OIDR] human gut metagenome; feces
143
71
-
Thr
GGT
[ENA]
¢þ
>W141246039
CALZ01000032
Bacillota
Lactobacillus equicursoris 66c [CALZ]
36096
36024
-
Thr
GGT
[ENA]
¡û
>W141246130
CAMA01000115
Bacillota
Lactobacillus equicursoris CIP 110162 [CAMA]
25230
25302
+
Thr
GGT
[ENA]
¡û
>W141246152
CAMA01000209
Bacillota
Lactobacillus equicursoris CIP 110162 [CAMA]
3015
2943
-
Thr
GGT
[ENA]
¡û
>W141264051
CCDV01000001
Bacillota
Lactobacillus delbrueckii subsp. lactis [CCDV]
329482
329554
+
Thr
GGT
[ENA]
¡û
>W141264909
CCET01000002
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [CCET]
166539
166611
+
Thr
GGT
[ENA]
¡û
>W141264993
CCEU01000001
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [CCEU]
165255
165327
+
Thr
GGT
[ENA]
¡û
>WENV183123198
OLNW01000371
[OLNW] human gut metagenome; faeces
7409
7481
+
Thr
GGT
[ENA]
¢þ
>WENV183166884
OLOY01002461
[OLOY] human gut metagenome; faeces
2286
2358
+
Thr
GGT
[ENA]
¢þ
>WENV183298147
OLSM01058807
[OLSM] human gut metagenome; faeces
500
572
+
Thr
GGT
[ENA]
¢þ
>WENV183772371
PPYF01016784
[PPYF] human gut metagenome; stool from patient with Crohn's disease
48767
48839
+
Thr
GGT
[ENA]
¢þ
>WENV183785909
PPYF01298663
[PPYF] human gut metagenome; stool from patient with Crohn's disease
7422
7494
+
Thr
GGT
[ENA]
¢þ
>C181024934
CP017235
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus L99 [CP017235]
203612
203684
+
Thr
GGT
-
¡û
>C181074559
CP022988
Bacillota
Lactobacillus delbrueckii subsp. lactis DSM 20072 [CP022988]
1905548
1905476
-
Thr
GGT
-
¡û
>C181076010
CP023139
Bacillota
Lactobacillus delbrueckii subsp. lactis KCTC 3034 [CP023139]
274204
274276
+
Thr
GGT
-
¡û
>W09101756
AAGQ01000016
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 [AAGQ]
10566
10494
-
Thr
GGT
[ENA]
¡û
>C181221044
LT899687
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [LT899687]
206706
206778
+
Thr
GGT
-
¡û
>C191063378
CP029250
Bacillota
Lactobacillus delbrueckii [CP029250]
266855
266927
+
Thr
GGT
-
¡û
>C191090023
CP032451
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus KLDS1.0207 [CP032451]
748468
748396
-
Thr
GGT
-
¡û
>C191224655
LS991409
Bacillota
Lactobacillus delbrueckii subsp. lactis [LS991409]
250473
250545
+
Thr
GGT
-
¡û
>W1910180855
BJLK01000041
Bacillota
Lactobacillus delbrueckii subsp. lactis NBRC 3376 [BJLK]
188
116
-
Thr
GGT
[ENA]
¡û
>W1910180929
BJLM01000073
Bacillota
Lactobacillus delbrueckii subsp. delbrueckii NBRC 3534 [BJLM]
176
104
-
Thr
GGT
[ENA]
¡û
>W1910180988
BJLO01000041
Bacillota
Lactobacillus delbrueckii subsp. lactis NBRC 3734 [BJLO]
171
99
-
Thr
GGT
[ENA]
¡û
>W1910182505
BJMY01000036
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus NBRC 13953 [BJMY]
101
29
-
Thr
GGT
[ENA]
¡û
>W1910186263
CCDS01000001
Bacillota
Lactobacillus delbrueckii subsp. lactis [CCDS]
204370
204442
+
Thr
GGT
[ENA]
¡û
>W1910186342
CCDT01000001
Bacillota
Lactobacillus delbrueckii subsp. lactis [CCDT]
472298
472226
-
Thr
GGT
[ENA]
¡û
>W1910186432
CCDU01000009
Bacillota
Lactobacillus delbrueckii subsp. lactis [CCDU]
7162
7090
-
Thr
GGT
[ENA]
¡û
>W1911631617
PUFG01000049
Bacillota
Lactobacillus delbrueckii subsp. jakobsenii DSM 26046 [PUFG]
33555
33483
-
Thr
GGT
[ENA]
¡û
>W1911702060
QNXB01000003
Bacillota
Lactobacillus delbrueckii TJA31 [QNXB]
43877
43805
-
Thr
GGT
[ENA]
¡û
>W1810000536
BEWJ01000080
Bacillota
Lactobacillus delbrueckii subsp. delbrueckii NBRC 3202 [BEWJ]
176
104
-
Thr
GGT
[ENA]
¡û
>W1810190879
PKKE01000010
Bacillota
Lactobacillus delbrueckii UMB0003 [PKKE]
12196
12124
-
Thr
GGT
[ENA]
¡û
>W1810445117
PZKI01000008
Bacillota
Lactobacillus delbrueckii AVK [PZKI]
7615
7687
+
Thr
GGT
[ENA]
¡û
>W1810744653
QOVB01000002
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus MBT 92059 [QOVB]
126386
126458
+
Thr
GGT
[ENA]
¡û
>W10124050
AEAT01000138
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 [AEAT]
2731
2803
+
Thr
GGT
[ENA]
¡û
>C11112423
CP000156
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus 2038 [CP000156]
211961
212033
+
Thr
GGT
[Ensembl]
¡û
>C11112512
CP002341
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus ND02 [CP002341]
234647
234719
+
Thr
GGT
[Ensembl]
¡û
>W11130887
AEAT01000138
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 [AEAT]
2731
2803
+
Thr
GGT
[ENA]
¡û
>W11152242
AEXU01000111
Bacillota
Lactobacillus delbrueckii subsp. lactis DSM 20072 [AEXU]
2703
2775
+
Thr
GGT
[ENA]
¡û
>W1511694231
LGAS01000013
Bacillota
Lactobacillus delbrueckii subsp. indicus JCM 15610 [LGAS]
41370
41442
+
Thr
GGT
[ENA]
¡û
>W1511698283
LGHR01000006
Bacillota
Lactobacillus delbrueckii subsp. sunkii JCM 17838 [LGHR]
69242
69314
+
Thr
GGT
[ENA]
¡û
>C161057551
CP013610
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus MN-BM-F01 [CP013610]
211446
211518
+
Thr
GGT
[Ensembl]
¡û
>W121009784
AGFO01000042
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus CNCM I-1632 [AGFO]
101
29
-
Thr
GGT
[ENA]
¡û
>W121010007
AGHW01000002
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus CNCM I-1519 [AGHW]
7343
7415
+
Thr
GGT
[ENA]
¡û
>W1610033079
AZCR01000012
Bacillota
Lactobacillus delbrueckii subsp. delbrueckii DSM 20074 = JCM 1012 [AZCR]
34513
34585
+
Thr
GGT
[ENA]
¡û
>W1610033742
AZDE01000132
Bacillota
Lactobacillus delbrueckii subsp. lactis DSM 20072 [AZDE]
192
120
-
Thr
GGT
[ENA]
¡û
>W1610034524
AZDU01000085
Bacillota
Lactobacillus equicursoris DSM 19284 = JCM 14600 = CIP 110162 [AZDU]
2656
2584
-
Thr
GGT
[ENA]
¡û
>W1610036647
AZFL01000042
Bacillota
Lactobacillus delbrueckii subsp. indicus DSM 15996 [AZFL]
7387
7315
-
Thr
GGT
[ENA]
¡û
>W1610044424
BBAN01000033
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002 [BBAN]
102
30
-
Thr
GGT
[ENA]
¡û
>W1610045830
BBBW01000021
Bacillota
Lactobacillus equicursoris DSM 19284 = JCM 14600 = CIP 110162 [BBBW]
277
349
+
Thr
GGT
[ENA]
¡û
>W1610120866
CZPS01000003
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [CZPS]
56765
56693
-
Thr
GGT
[ENA]
¡û
>W1610527975
JQAV01000030
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002 DSM 20081 [JQAV]
11593
11665
+
Thr
GGT
[ENA]
¡û
>W1610529648
JQCG01000001
Bacillota
Lactobacillus delbrueckii subsp. jakobsenii ZN7a-9 = DSM 26046 [JQCG]
1319
1247
-
Thr
GGT
[ENA]
¡û
>W1610931774
LUGK01000021
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [LUGK]
11666
11738
+
Thr
GGT
[ENA]
¡û
>W1610977858
LVWX01000010
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [LVWX]
55914
55842
-
Thr
GGT
[ENA]
¡û
>W1610977935
LVWY01000009
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [LVWY]
56200
56128
-
Thr
GGT
[ENA]
¡û
>W1710030351
AZCR01000012
Bacillota
Lactobacillus delbrueckii subsp. delbrueckii DSM 20074 = JCM 1012 [AZCR]
34513
34585
+
Thr
GGT
[ENA]
¡û
>W1710030920
AZDE01000132
Bacillota
Lactobacillus delbrueckii subsp. lactis DSM 20072 [AZDE]
192
120
-
Thr
GGT
[ENA]
¡û
>W1710031651
AZDU01000085
Bacillota
Lactobacillus equicursoris DSM 19284 = JCM 14600 = CIP 110162 [AZDU]
2656
2584
-
Thr
GGT
[ENA]
¡û
>W1710033686
AZFL01000042
Bacillota
Lactobacillus delbrueckii subsp. indicus DSM 15996 [AZFL]
7387
7315
-
Thr
GGT
[ENA]
¡û
>W1710042671
BBBW01000021
Bacillota
Lactobacillus equicursoris DSM 19284 = JCM 14600 = CIP 110162 [BBBW]
277
349
+
Thr
GGT
[ENA]
¡û
>W1710123570
CZPS01000003
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [CZPS]
56765
56693
-
Thr
GGT
[ENA]
¡û
>W1710631238
JQCG01000001
Bacillota
Lactobacillus delbrueckii subsp. jakobsenii ZN7a-9 = DSM 26046 [JQCG]
1319
1247
-
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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