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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.283424 (87 seq.)
>W1711120616
LUGK01000061
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [LUGK]
15706
15780
+
Thr
CGT
[ENA]
¡û
>W1711167835
LVWX01000048
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [LVWX]
6478
6405
-
Thr
CGT
[ENA]
¡û
>W1711167896
LVWY01000041
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [LVWY]
3541
3614
+
Thr
CGT
[ENA]
¡û
>W1711185044
LWNA01000123
Bacillota
Lactobacillus sp. HMSC08B12 [LWNA]
663
590
-
Thr
CGT
[ENA]
¡û
>W1711665927
MRBF01000002
Bacillota
Lactobacillus delbrueckii subsp. lactis [MRBF]
2150107
2150034
-
Thr
CGT
[ENA]
¡û
>W1711678829
MRUN01000012
Bacillota
Lactobacillus delbrueckii subsp. lactis DSM 20072 [MRUN]
1240285
1240212
-
Thr
CGT
[ENA]
¡û
>C171048698
CP016393
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus ND04 [CP016393]
1282974
1283048
+
Thr
CGT
-
¡û
>C171074208
CP018156
Bacillota
Lactobacillus delbrueckii subsp. lactis KCTC 3035 [CP018156]
1938746
1938819
+
Thr
CGT
-
¡û
>C171075487
CP018215
Bacillota
Lactobacillus delbrueckii subsp. lactis KCCM 34717 [CP018215]
90361
90434
+
Thr
CGT
-
¡û
>C171075614
CP018216
Bacillota
Lactobacillus delbrueckii subsp. delbrueckii KCTC 13731 [CP018216]
1539114
1539040
-
Thr
CGT
-
¡û
>C171075707
CP018217
Bacillota
Lactobacillus delbrueckii subsp. sunkii JCM 17838 [CP018217]
1623483
1623410
-
Thr
CGT
-
¡û
>C171075793
CP018218
Bacillota
Lactobacillus delbrueckii subsp. jakobsenii ZN7a-9 = DSM 26046 [CP018218]
1843412
1843339
-
Thr
CGT
-
¡û
>C171075857
CP018218
Bacillota
Lactobacillus delbrueckii subsp. jakobsenii ZN7a-9 = DSM 26046 [CP018218]
16709
16636
-
Thr
CGT
-
¡û
>C171081369
CP018614
Bacillota
Lactobacillus delbrueckii subsp. indicus JCM 15610 [CP018614]
1586330
1586256
-
Thr
CGT
-
¡û
>C171089454
CP019120
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus DSM 20080 [CP019120]
1521042
1520968
-
Thr
CGT
-
¡û
>C171116255
CP021136
Bacillota
Lactobacillus delbrueckii subsp. delbrueckii TUA4408L [CP021136]
668137
668064
-
Thr
CGT
-
¡û
>W131204334
ATBQ01000204
Bacillota
Lactobacillus delbrueckii subsp. lactis CRL581 [ATBQ]
27167
27094
-
Thr
CGT
[ENA]
¡û
>C011411
CR954253
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002 [CR954253]
1517775
1517703
-
Thr
CGT
[Ensembl]
¡û
>C011565
CP000412
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 [CP000412]
1534557
1534485
-
Thr
CGT
[Ensembl]
¡û
>W141037920
ALPY01000067
Bacillota
Lactobacillus delbrueckii ZN7a-9 [ALPY]
17060
17133
+
Thr
CGT
[ENA]
¡û
>WENV181659932
OGOF01001560
[OGOF] human gut metagenome; faeces
3528
3601
+
Thr
CGT
[ENA]
¢þ
>W141228011
BALP01000024
Bacillota
Lactobacillus delbrueckii subsp. delbrueckii JCM 1012 [BALP]
3447
3520
+
Thr
CGT
[ENA]
¡û
>WENV182350054
OIBE01002873
[OIBE] human gut metagenome; feces
115
189
+
Thr
CGT
[ENA]
¢þ
>WENV182369938
OICS01000266
[OICS] human gut metagenome; feces
14447
14373
-
Thr
CGT
[ENA]
¢þ
>WENV182381873
OIDR01000526
[OIDR] human gut metagenome; feces
3174
3100
-
Thr
CGT
[ENA]
¢þ
>W141246096
CALZ01000161
Bacillota
Lactobacillus equicursoris 66c [CALZ]
23056
22983
-
Thr
CGT
[ENA]
¡û
>W141246100
CAMA01000014
Bacillota
Lactobacillus equicursoris CIP 110162 [CAMA]
13075
13150
+
Thr
CGT
[ENA]
¡û
>W141264112
CCDV01000001
Bacillota
Lactobacillus delbrueckii subsp. lactis [CCDV]
1715520
1715447
-
Thr
CGT
[ENA]
¡û
>W141264956
CCET01000009
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [CCET]
48511
48437
-
Thr
CGT
[ENA]
¡û
>W141265040
CCEU01000009
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [CCEU]
20530
20604
+
Thr
CGT
[ENA]
¡û
>WENV183123793
OLNW01002418
[OLNW] human gut metagenome; faeces
15265
15339
+
Thr
CGT
[ENA]
¢þ
>WENV183166949
OLOY01005504
[OLOY] human gut metagenome; faeces
1275
1348
+
Thr
CGT
[ENA]
¢þ
>WENV183772403
PPYF01016839
[PPYF] human gut metagenome; stool from patient with Crohn's disease
22011
21938
-
Thr
CGT
[ENA]
¢þ
>WENV183785903
PPYF01298508
[PPYF] human gut metagenome; stool from patient with Crohn's disease
15283
15357
+
Thr
CGT
[ENA]
¢þ
>C181025000
CP017235
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus L99 [CP017235]
1515803
1515729
-
Thr
CGT
-
¡û
>C181074513
CP022988
Bacillota
Lactobacillus delbrueckii subsp. lactis DSM 20072 [CP022988]
461326
461399
+
Thr
CGT
-
¡û
>C181076077
CP023139
Bacillota
Lactobacillus delbrueckii subsp. lactis KCTC 3034 [CP023139]
1772456
1772383
-
Thr
CGT
-
¡û
>W09101759
AAGQ01000024
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 [AAGQ]
7302
7229
-
Thr
CGT
[ENA]
¡û
>C181221108
LT899687
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [LT899687]
1522466
1522392
-
Thr
CGT
-
¡û
>C191063444
CP029250
Bacillota
Lactobacillus delbrueckii [CP029250]
1851018
1850945
-
Thr
CGT
-
¡û
>C191089998
CP032451
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus KLDS1.0207 [CP032451]
1310574
1310648
+
Thr
CGT
-
¡û
>C191224721
LS991409
Bacillota
Lactobacillus delbrueckii subsp. lactis [LS991409]
1645073
1645000
-
Thr
CGT
-
¡û
>W1910180852
BJLK01000019
Bacillota
Lactobacillus delbrueckii subsp. lactis NBRC 3376 [BJLK]
16928
17001
+
Thr
CGT
[ENA]
¡û
>W1910180907
BJLM01000031
Bacillota
Lactobacillus delbrueckii subsp. delbrueckii NBRC 3534 [BJLM]
17006
17080
+
Thr
CGT
[ENA]
¡û
>W1910180999
BJLO01000102
Bacillota
Lactobacillus delbrueckii subsp. lactis NBRC 3734 [BJLO]
5209
5136
-
Thr
CGT
[ENA]
¡û
>W1910182502
BJMY01000028
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus NBRC 13953 [BJMY]
814
740
-
Thr
CGT
[ENA]
¡û
>W1910186287
CCDS01000009
Bacillota
Lactobacillus delbrueckii subsp. lactis [CCDS]
21187
21260
+
Thr
CGT
[ENA]
¡û
>W1910186380
CCDT01000007
Bacillota
Lactobacillus delbrueckii subsp. lactis [CCDT]
54984
54911
-
Thr
CGT
[ENA]
¡û
>W1910186434
CCDU01000010
Bacillota
Lactobacillus delbrueckii subsp. lactis [CCDU]
18572
18645
+
Thr
CGT
[ENA]
¡û
>W1911631629
PUFG01000057
Bacillota
Lactobacillus delbrueckii subsp. jakobsenii DSM 26046 [PUFG]
17281
17354
+
Thr
CGT
[ENA]
¡û
>W1911702069
QNXB01000012
Bacillota
Lactobacillus delbrueckii TJA31 [QNXB]
20590
20664
+
Thr
CGT
[ENA]
¡û
>W1810000515
BEWJ01000030
Bacillota
Lactobacillus delbrueckii subsp. delbrueckii NBRC 3202 [BEWJ]
2054
1980
-
Thr
CGT
[ENA]
¡û
>W1810190884
PKKE01000013
Bacillota
Lactobacillus delbrueckii UMB0003 [PKKE]
32145
32072
-
Thr
CGT
[ENA]
¡û
>W1810445118
PZKI01000009
Bacillota
Lactobacillus delbrueckii AVK [PZKI]
15573
15647
+
Thr
CGT
[ENA]
¡û
>W1810744663
QOVB01000008
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus MBT 92059 [QOVB]
15390
15464
+
Thr
CGT
[ENA]
¡û
>W10124006
AEAT01000042
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 [AEAT]
16918
16991
+
Thr
CGT
[ENA]
¡û
>C11112485
CP000156
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus 2038 [CP000156]
1572142
1572068
-
Thr
CGT
[Ensembl]
¡û
>C11112582
CP002341
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus ND02 [CP002341]
1717778
1717705
-
Thr
CGT
[Ensembl]
¡û
>W11130843
AEAT01000042
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 [AEAT]
16918
16991
+
Thr
CGT
[ENA]
¡û
>W1511510309
JXRV01000076
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus CRL871 [JXRV]
44127
44053
-
Thr
CGT
[ENA]
¡û
>W11152206
AEXU01000054
Bacillota
Lactobacillus delbrueckii subsp. lactis DSM 20072 [AEXU]
309
236
-
Thr
CGT
[ENA]
¡û
>W1511694268
LGAS01000047
Bacillota
Lactobacillus delbrueckii subsp. indicus JCM 15610 [LGAS]
2344
2270
-
Thr
CGT
[ENA]
¡û
>W1511698318
LGHR01000021
Bacillota
Lactobacillus delbrueckii subsp. sunkii JCM 17838 [LGHR]
13069
12996
-
Thr
CGT
[ENA]
¡û
>C161057611
CP013610
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus MN-BM-F01 [CP013610]
1548640
1548566
-
Thr
CGT
[Ensembl]
¡û
>W121009773
AGFO01000027
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus CNCM I-1632 [AGFO]
824
750
-
Thr
CGT
[ENA]
¡û
>W121010048
AGHW01000032
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus CNCM I-1519 [AGHW]
1036
962
-
Thr
CGT
[ENA]
¡û
>W1610033081
AZCR01000014
Bacillota
Lactobacillus delbrueckii subsp. delbrueckii DSM 20074 = JCM 1012 [AZCR]
30285
30212
-
Thr
CGT
[ENA]
¡û
>W1610033740
AZDE01000118
Bacillota
Lactobacillus delbrueckii subsp. lactis DSM 20072 [AZDE]
3517
3590
+
Thr
CGT
[ENA]
¡û
>W1610034513
AZDU01000035
Bacillota
Lactobacillus equicursoris DSM 19284 = JCM 14600 = CIP 110162 [AZDU]
7071
6996
-
Thr
CGT
[ENA]
¡û
>W1610036642
AZFL01000018
Bacillota
Lactobacillus delbrueckii subsp. indicus DSM 15996 [AZFL]
625
551
-
Thr
CGT
[ENA]
¡û
>W1610044419
BBAN01000027
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002 [BBAN]
15406
15480
+
Thr
CGT
[ENA]
¡û
>W1610045836
BBBW01000038
Bacillota
Lactobacillus equicursoris DSM 19284 = JCM 14600 = CIP 110162 [BBBW]
10835
10910
+
Thr
CGT
[ENA]
¡û
>W1610120889
CZPS01000013
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [CZPS]
21671
21597
-
Thr
CGT
[ENA]
¡û
>W1610502801
FLLT01000006
Bacillota
Lactobacillus delbrueckii [FLLT]
776069
775994
-
Thr
CGT
[ENA]
¡û
>W1610527973
JQAV01000025
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002 DSM 20081 [JQAV]
1357
1283
-
Thr
CGT
[ENA]
¡û
>W1610529668
JQCG01000028
Bacillota
Lactobacillus delbrueckii subsp. jakobsenii ZN7a-9 = DSM 26046 [JQCG]
17071
17144
+
Thr
CGT
[ENA]
¡û
>W1610931813
LUGK01000061
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [LUGK]
15706
15780
+
Thr
CGT
[ENA]
¡û
>W1610977904
LVWX01000048
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [LVWX]
6478
6405
-
Thr
CGT
[ENA]
¡û
>W1610977965
LVWY01000041
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [LVWY]
3541
3614
+
Thr
CGT
[ENA]
¡û
>W1710030353
AZCR01000014
Bacillota
Lactobacillus delbrueckii subsp. delbrueckii DSM 20074 = JCM 1012 [AZCR]
30285
30212
-
Thr
CGT
[ENA]
¡û
>W1710030918
AZDE01000118
Bacillota
Lactobacillus delbrueckii subsp. lactis DSM 20072 [AZDE]
3517
3590
+
Thr
CGT
[ENA]
¡û
>W1710031640
AZDU01000035
Bacillota
Lactobacillus equicursoris DSM 19284 = JCM 14600 = CIP 110162 [AZDU]
7071
6996
-
Thr
CGT
[ENA]
¡û
>W1710033681
AZFL01000018
Bacillota
Lactobacillus delbrueckii subsp. indicus DSM 15996 [AZFL]
625
551
-
Thr
CGT
[ENA]
¡û
>W1710042677
BBBW01000038
Bacillota
Lactobacillus equicursoris DSM 19284 = JCM 14600 = CIP 110162 [BBBW]
10835
10910
+
Thr
CGT
[ENA]
¡û
>W1710123593
CZPS01000013
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [CZPS]
21671
21597
-
Thr
CGT
[ENA]
¡û
>W1710496200
FLLT01000006
Bacillota
Lactobacillus delbrueckii [FLLT]
776069
775994
-
Thr
CGT
[ENA]
¡û
>W1710631258
JQCG01000028
Bacillota
Lactobacillus delbrueckii subsp. jakobsenii ZN7a-9 = DSM 26046 [JQCG]
17071
17144
+
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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