This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.283458 (74 seq.)
>W1711136411
LVAE01000002
Fibrobacterota
Fibrobacterales bacterium Fibro_02 [LVAE]
23408
23482
+
Asn
GTT
[ENA]
¡û
>W1711136448
LVAF01000014
Fibrobacterota
Fibrobacterales bacterium Fibro_03 [LVAF]
75308
75234
-
Asn
GTT
[ENA]
¡û
>W1711796007
MWQE01000001
Fibrobacterota
Fibrobacter sp. UWR2 [MWQE]
919906
919979
+
Asn
GTT
[ENA]
¡û
>W1711796052
MWQF01000005
Fibrobacterota
Fibrobacter sp. UWH3 [MWQF]
144944
145017
+
Asn
GTT
[ENA]
¡û
>W1711796053
MWQF01000005
Fibrobacterota
Fibrobacter sp. UWH3 [MWQF]
153358
153285
-
Asn
GTT
[ENA]
¡û
>W1711796090
MWQG01000002
Fibrobacterota
Fibrobacter sp. UWH1 [MWQG]
145482
145555
+
Asn
GTT
[ENA]
¡û
>W1711796091
MWQG01000002
Fibrobacterota
Fibrobacter sp. UWH1 [MWQG]
153898
153825
-
Asn
GTT
[ENA]
¡û
>W1711796168
MWQH01000009
Fibrobacterota
Fibrobacter sp. UWB5 [MWQH]
89584
89510
-
Asn
GTT
[ENA]
¡û
>W1711796189
MWQI01000002
Fibrobacterota
Fibrobacter sp. UWB4 [MWQI]
305918
305845
-
Asn
GTT
[ENA]
¡û
>W1711796221
MWQJ01000001
Fibrobacterota
Fibrobacter sp. UWB3 [MWQJ]
447920
447847
-
Asn
GTT
[ENA]
¡û
>W1711796222
MWQJ01000001
Fibrobacterota
Fibrobacter sp. UWB3 [MWQJ]
447716
447643
-
Asn
GTT
[ENA]
¡û
>W1711796274
MWQK01000002
Fibrobacterota
Fibrobacter sp. UWB2 [MWQK]
259863
259936
+
Asn
GTT
[ENA]
¡û
>W1711796275
MWQK01000002
Fibrobacterota
Fibrobacter sp. UWB2 [MWQK]
260066
260139
+
Asn
GTT
[ENA]
¡û
>W1711796338
MWQL01000016
Fibrobacterota
Fibrobacter sp. UWB1 [MWQL]
6135
6209
+
Asn
GTT
[ENA]
¡û
>WENV180003160
FLNZ01000017
[FLNZ] bioreactor metagenome; Moose rumen
28272
28345
+
Asn
GTT
[ENA]
¢þ
>WENV180666581
OCVV011215122
[OCVV] gut metagenome; gut
874
801
-
Asn
GTT
[ENA]
¢þ
>WENV180666582
OCVV011215122
[OCVV] gut metagenome; gut
874
801
-
Asn
GTT
[ENA]
¢þ
>WENV180670507
OCVV011302771
[OCVV] gut metagenome; gut
303
230
-
Asn
GTT
[ENA]
¢þ
>WENV180670508
OCVV011302771
[OCVV] gut metagenome; gut
303
230
-
Asn
GTT
[ENA]
¢þ
>WENV180675043
OCVV011356200
[OCVV] gut metagenome; gut
15482
15555
+
Asn
GTT
[ENA]
¢þ
>WENV180675045
OCVV011356200
[OCVV] gut metagenome; gut
15482
15555
+
Asn
GTT
[ENA]
¢þ
>WENV180676413
OCVV011408752
[OCVV] gut metagenome; gut
89
163
+
Asn
GTT
[ENA]
¢þ
>WENV180676414
OCVV011408752
[OCVV] gut metagenome; gut
89
163
+
Asn
GTT
[ENA]
¢þ
>WENV170775590
LXOW01065249
[LXOW] bovine gut metagenome; Cow rumen
6779
6706
-
Asn
GTT
[ENA]
¢þ
>W09134192
ACRA01000009
Fibrobacterota
Fibrobacter succinogenes subsp. succinogenes S85 [ACRA]
34128
34201
+
Asn
GTT
[ENA]
¡û
>W09134193
ACRA01000009
Fibrobacterota
Fibrobacter succinogenes subsp. succinogenes S85 [ACRA]
34330
34403
+
Asn
GTT
[ENA]
¡û
>W1911496505
OCMS01000002
Fibrobacterota
Fibrobacter sp. UWB16 [OCMS]
365732
365805
+
Asn
GTT
[ENA]
¡û
>W1911496506
OCMS01000002
Fibrobacterota
Fibrobacter sp. UWB16 [OCMS]
365936
366009
+
Asn
GTT
[ENA]
¡û
>W1911497822
OCSS01000001
Fibrobacterota
Fibrobacter sp. UWT3 [OCSS]
760824
760897
+
Asn
GTT
[ENA]
¡û
>W1810172608
PJMN01000001
Fibrobacterota
Fibrobacter sp. UWT1 [PJMN]
1448862
1448936
+
Asn
GTT
[ENA]
¡û
>W1810172636
PJMN01000001
Fibrobacterota
Fibrobacter sp. UWT1 [PJMN]
1457279
1457206
-
Asn
GTT
[ENA]
¡û
>W1810595063
QGDP01000001
Fibrobacterota
Fibrobacter succinogenes subsp. elongatus HM2 [QGDP]
1367668
1367595
-
Asn
GTT
[ENA]
¡û
>W1810595064
QGDP01000001
Fibrobacterota
Fibrobacter succinogenes subsp. elongatus HM2 [QGDP]
1367465
1367392
-
Asn
GTT
[ENA]
¡û
>W1810595308
QGDU01000001
Fibrobacterota
Fibrobacter sp. UWR4 [QGDU]
104262
104335
+
Asn
GTT
[ENA]
¡û
>W1810595309
QGDU01000001
Fibrobacterota
Fibrobacter sp. UWR4 [QGDU]
104448
104521
+
Asn
GTT
[ENA]
¡û
>W1810595395
QGDW01000001
Fibrobacterota
Fibrobacter sp. UWB6 [QGDW]
577861
577935
+
Asn
GTT
[ENA]
¡û
>W1810685055
QKZA01000002
Fibrobacterota
Fibrobacter sp. UWR1 [QKZA]
104261
104334
+
Asn
GTT
[ENA]
¡û
>W1810685056
QKZA01000002
Fibrobacterota
Fibrobacter sp. UWR1 [QKZA]
104447
104520
+
Asn
GTT
[ENA]
¡û
>W1810695920
QLSW01000008
Fibrobacterota
Fibrobacter sp. UWH8 [QLSW]
57621
57694
+
Asn
GTT
[ENA]
¡û
>W1810695921
QLSW01000008
Fibrobacterota
Fibrobacter sp. UWH8 [QLSW]
66036
65963
-
Asn
GTT
[ENA]
¡û
>C10106889
CP001792
Fibrobacterota
Fibrobacter succinogenes subsp. succinogenes S85 [CP001792]
2945724
2945797
+
Asn
GTT
-
¡û
>C10106890
CP001792
Fibrobacterota
Fibrobacter succinogenes subsp. succinogenes S85 [CP001792]
2945926
2945999
+
Asn
GTT
-
¡û
>C10106942
CP002158
Fibrobacterota
Fibrobacter succinogenes subsp. succinogenes S85 [CP002158]
3392645
3392718
+
Asn
GTT
-
¡û
>C10106943
CP002158
Fibrobacterota
Fibrobacter succinogenes subsp. succinogenes S85 [CP002158]
3392847
3392920
+
Asn
GTT
-
¡û
>W1610636549
LIUK01000025
Fibrobacterota
Fibrobacteria bacterium AD80 [LIUK]
23408
23482
+
Asn
GTT
[ENA]
¡û
>W1610636574
LIUL01000014
Fibrobacterota
Fibrobacteria bacterium AD111 [LIUL]
75308
75234
-
Asn
GTT
[ENA]
¡û
>W1610947531
LVAE01000002
Fibrobacterota
Fibrobacterales bacterium Fibro_02 [LVAE]
23408
23482
+
Asn
GTT
[ENA]
¡û
>W1610947568
LVAF01000014
Fibrobacterota
Fibrobacterales bacterium Fibro_03 [LVAF]
75308
75234
-
Asn
GTT
[ENA]
¡û
>W1710584961
FQVZ01000001
Fibrobacterota
Fibrobacter sp. UWB8 [FQVZ]
537483
537557
+
Asn
GTT
[ENA]
¡û
>W1710585773
FQWP01000011
Fibrobacterota
Fibrobacter sp. UWH9 [FQWP]
47518
47591
+
Asn
GTT
[ENA]
¡û
>W1710585774
FQWP01000011
Fibrobacterota
Fibrobacter sp. UWH9 [FQWP]
55934
55861
-
Asn
GTT
[ENA]
¡û
>W1710585836
FQWR01000002
Fibrobacterota
Fibrobacter sp. UWCM [FQWR]
102971
103044
+
Asn
GTT
[ENA]
¡û
>W1710587413
FQYM01000002
Fibrobacterota
Fibrobacter sp. UWP2 [FQYM]
13094
13167
+
Asn
GTT
[ENA]
¡û
>W1710590326
FRAX01000006
Fibrobacterota
Fibrobacter sp. UWH6 [FRAX]
137171
137244
+
Asn
GTT
[ENA]
¡û
>W1710590327
FRAX01000006
Fibrobacterota
Fibrobacter sp. UWH6 [FRAX]
145586
145513
-
Asn
GTT
[ENA]
¡û
>W1710590386
FRAY01000004
Fibrobacterota
Fibrobacter sp. UWH4 [FRAY]
285458
285384
-
Asn
GTT
[ENA]
¡û
>W1710590412
FRAZ01000002
Fibrobacterota
Fibrobacter sp. UWB12 [FRAZ]
155345
155272
-
Asn
GTT
[ENA]
¡û
>W1710590413
FRAZ01000002
Fibrobacterota
Fibrobacter sp. UWB12 [FRAZ]
155084
155011
-
Asn
GTT
[ENA]
¡û
>W1710590455
FRBA01000001
Fibrobacterota
Fibrobacter sp. UWOV1 [FRBA]
171603
171529
-
Asn
GTT
[ENA]
¡û
>W1710590515
FRBB01000010
Fibrobacterota
Fibrobacter sp. UWH5 [FRBB]
55298
55371
+
Asn
GTT
[ENA]
¡û
>W1710590516
FRBB01000010
Fibrobacterota
Fibrobacter sp. UWH5 [FRBB]
63713
63640
-
Asn
GTT
[ENA]
¡û
>W1710590671
FRBE01000022
Fibrobacterota
Fibrobacter sp. UWEL [FRBE]
190
263
+
Asn
GTT
[ENA]
¡û
>W1710590672
FRBE01000022
Fibrobacterota
Fibrobacter sp. UWEL [FRBE]
394
467
+
Asn
GTT
[ENA]
¡û
>W1710590701
FRBF01000006
Fibrobacterota
Fibrobacter sp. UWT2 [FRBF]
116904
116978
+
Asn
GTT
[ENA]
¡û
>W1710592575
FRCO01000007
Fibrobacterota
Fibrobacter sp. UWB7 [FRCO]
45099
45026
-
Asn
GTT
[ENA]
¡û
>W1710592576
FRCO01000007
Fibrobacterota
Fibrobacter sp. UWB7 [FRCO]
44896
44823
-
Asn
GTT
[ENA]
¡û
>W1710592960
FRCW01000004
Fibrobacterota
Fibrobacter sp. UWR3 [FRCW]
62165
62238
+
Asn
GTT
[ENA]
¡û
>W1710595130
FSRT01000001
Fibrobacterota
Fibrobacter sp. UWB11 [FSRT]
580182
580255
+
Asn
GTT
[ENA]
¡û
>W1710595131
FSRT01000001
Fibrobacterota
Fibrobacter sp. UWB11 [FSRT]
580443
580516
+
Asn
GTT
[ENA]
¡û
>W1710608501
FXAX01000006
Fibrobacterota
Fibrobacter sp. UWB13 [FXAX]
95372
95445
+
Asn
GTT
[ENA]
¡û
>W1710608502
FXAX01000006
Fibrobacterota
Fibrobacter sp. UWB13 [FXAX]
95575
95648
+
Asn
GTT
[ENA]
¡û
>W1710608628
FXBA01000001
Fibrobacterota
Fibrobacter sp. UWB15 [FXBA]
577860
577934
+
Asn
GTT
[ENA]
¡û
>W1710771322
LIUK01000025
Fibrobacterota
Fibrobacteria bacterium AD80 [LIUK]
23408
23482
+
Asn
GTT
[ENA]
¡û
>W1710771347
LIUL01000014
Fibrobacterota
Fibrobacteria bacterium AD111 [LIUL]
75308
75234
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK