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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.283492 (94 seq.)
>W1710864239
LMFS01000001
Alphaproteobacteria
Pseudolabrys sp. Root1462 [LMFS]
2837818
2837742
-
Pro
CGG
[ENA]
¡û
>W1710892425
LNDS01000039
Alphaproteobacteria
Rhizobiales bacterium Ga0077525 [LNDS]
42142
42066
-
Pro
CGG
[ENA]
¡û
>W1711009530
LQQT01000017
Alphaproteobacteria
Chelatococcus daeguensis [LQQT]
31589
31513
-
Pro
CGG
[ENA]
¡û
>W1711257116
LYTJ01000023
Alphaproteobacteria
Mesorhizobium loti [LYTJ]
258242
258318
+
Pro
CGG
[ENA]
¡û
>W1711286666
LZTH01000012
Alphaproteobacteria
Mesorhizobium loti [LZTH]
673661
673585
-
Pro
CGG
[ENA]
¡û
>W1711286723
LZTI01000012
Alphaproteobacteria
Mesorhizobium loti [LZTI]
647572
647648
+
Pro
CGG
[ENA]
¡û
>W1711286778
LZTJ01000012
Alphaproteobacteria
Mesorhizobium loti [LZTJ]
647572
647648
+
Pro
CGG
[ENA]
¡û
>W1711286827
LZTK01000008
Alphaproteobacteria
Mesorhizobium loti [LZTK]
844881
844805
-
Pro
CGG
[ENA]
¡û
>W1711286878
LZTL01000023
Alphaproteobacteria
Mesorhizobium loti [LZTL]
180749
180825
+
Pro
CGG
[ENA]
¡û
>W1711353193
MDDT01000057
Alphaproteobacteria
Mesorhizobium sp. LCM 4576 [MDDT]
368758
368682
-
Pro
CGG
[ENA]
¡û
>W1711353232
MDDU01000035
Alphaproteobacteria
Mesorhizobium sp. LCM 4577 [MDDU]
14982
15058
+
Pro
CGG
[ENA]
¡û
>W1711384681
MEDI01000056
Alphaproteobacteria
Kaistia sp. SCN 65-12 [MEDI]
763
839
+
Pro
CGG
[ENA]
¡û
>W1711505380
MKVL01000025
Alphaproteobacteria
Mesorhizobium sp. 65-26 [MKVL]
644632
644556
-
Pro
CGG
[ENA]
¡û
>W1711506002
MKWA01000008
Alphaproteobacteria
Rhizobiales bacterium 64-17 [MKWA]
206474
206550
+
Pro
CGG
[ENA]
¡û
>W1711573732
MNDV01000075
Alphaproteobacteria
Alphaproteobacteria bacterium 13_2_20CM_2_64_7 [MNDV]
9980
10056
+
Pro
CGG
[ENA]
¡û
>W131182184
ARQE01000002
Alphaproteobacteria
Aureimonas ureilytica DSM 18598 [ARQE]
565241
565165
-
Pro
CGG
[ENA]
¡û
>C171072662
CP018095
Alphaproteobacteria
Chelatococcus daeguensis TAD1 [CP018095]
1356644
1356720
+
Pro
CGG
-
¡û
>C013710
BA000012
Alphaproteobacteria
Mesorhizobium japonicum MAFF 303099 [BA000012]
6294515
6294439
-
Pro
CGG
[Ensembl]
¡û
>WENV180020587
FTCZ01006684
[FTCZ] metagenome; soil
1403
1327
-
Pro
CGG
[ENA]
¢þ
>WENV180099508
NMRC01010263
[NMRC] plant metagenome; fluid collected inside the plant's pitcher
717
793
+
Pro
CGG
[ENA]
¢þ
>WENV180267478
OBEQ011859175
[OBEQ] groundwater metagenome; groundwater
301
377
+
Pro
CGG
[ENA]
¢þ
>WENV180291662
OBIV01123398
[OBIV] soil metagenome; Clay
230
154
-
Pro
CGG
[ENA]
¢þ
>WENV180321139
OBKQ01125199
[OBKQ] soil metagenome; Clay
157
81
-
Pro
CGG
[ENA]
¢þ
>WENV180343496
OBLK01026277
[OBLK] soil metagenome; Clay
254
330
+
Pro
CGG
[ENA]
¢þ
>WENV180353332
OBLQ010697358
[OBLQ] soil metagenome; soil
150
74
-
Pro
CGG
[ENA]
¢þ
>WENV180692034
OCZS010318343
[OCZS] soil metagenome; soil
389
465
+
Pro
CGG
[ENA]
¢þ
>WENV181123075
OEFO01078077
[OEFO] soil metagenome; soil
129
53
-
Pro
CGG
[ENA]
¢þ
>WENV181165556
OEIS01031780
[OEIS] soil metagenome; soil
310
234
-
Pro
CGG
[ENA]
¢þ
>WENV181166450
OEIU01000320
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
47790
47714
-
Pro
CGG
[ENA]
¢þ
>WENV181307872
OFIS01000010
[OFIS] sludge metagenome; sludge
23227
23303
+
Pro
CGG
[ENA]
¢þ
>WENV181307994
OFIS01000088
[OFIS] sludge metagenome; sludge
92164
92240
+
Pro
CGG
[ENA]
¢þ
>WENV181308194
OFIS01000601
[OFIS] sludge metagenome; sludge
6207
6131
-
Pro
CGG
[ENA]
¢þ
>WENV181311476
OFJB01002695
[OFJB] sludge metagenome; sludge
3004
2928
-
Pro
CGG
[ENA]
¢þ
>WENV181312014
OFJB01032227
[OFJB] sludge metagenome; sludge
1
77
+
Pro
CGG
[ENA]
¢þ
>WENV181401531
OFTX01000722
[OFTX] sludge metagenome; sludge
3166
3090
-
Pro
CGG
[ENA]
¢þ
>W141150185
AXAE01000017
Alphaproteobacteria
Mesorhizobium erdmanii USDA 3471 [AXAE]
141769
141693
-
Pro
CGG
[ENA]
¡û
>W141198906
AYWO01000015
Alphaproteobacteria
Mesorhizobium sp. LNHC252B00 [AYWO]
102241
102317
+
Pro
CGG
[ENA]
¡û
>W141200953
AZAM01000001
Alphaproteobacteria
Mesorhizobium japonicum R7A [AZAM]
948538
948462
-
Pro
CGG
[ENA]
¡û
>W141266840
CCNB01000045
Alphaproteobacteria
Mesorhizobium plurifarium [CCNB]
286154
286078
-
Pro
CGG
[ENA]
¡û
>W141266860
CCNC01000091
Alphaproteobacteria
Mesorhizobium sp. ORS 3359 ORS3359 [CCNC]
169004
168928
-
Pro
CGG
[ENA]
¡û
>W141277497
JAEQ01000004
Alphaproteobacteria
Chelativorans sp. J32 [JAEQ]
39186
39110
-
Pro
CGG
[ENA]
¡û
>WENV183671046
ORJL011021062
[ORJL] groundwater metagenome; groundwater
3
79
+
Pro
CGG
[ENA]
¢þ
>WENV183677833
ORJL011803332
[ORJL] groundwater metagenome; groundwater
472
396
-
Pro
CGG
[ENA]
¢þ
>WENV183683539
ORMF010587101
[ORMF] groundwater metagenome; groundwater
503
579
+
Pro
CGG
[ENA]
¢þ
>WENV170710607
LNFM01002168
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
42151
42075
-
Pro
CGG
[ENA]
¢þ
>WENV170710643
LNFM01002283
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
9631
9555
-
Pro
CGG
[ENA]
¢þ
>C191005678
AP018907
Alphaproteobacteria
Blastochloris tepida GI [AP018907]
2616919
2616995
+
Pro
CGG
-
¡û
>C191125594
CP034445
Alphaproteobacteria
Mesorhizobium sp. M2A.F.Ca.ET.043.02.1.1 [CP034445]
5385858
5385782
-
Pro
CGG
-
¡û
>C191125625
CP034446
Alphaproteobacteria
Mesorhizobium sp. M2A.F.Ca.ET.043.05.1.1 [CP034446]
3098334
3098410
+
Pro
CGG
-
¡û
>C191125766
CP034449
Alphaproteobacteria
Mesorhizobium sp. M2A.F.Ca.ET.046.03.2.1 [CP034449]
452747
452823
+
Pro
CGG
-
¡û
>C191171963
CP039740
Alphaproteobacteria
Pseudolabrys sp. FHR47 [CP039740]
3458113
3458037
-
Pro
CGG
-
¡û
>C191184154
CP040914
Alphaproteobacteria
Mesorhizobium sp. 8 [CP040914]
4718450
4718374
-
Pro
CGG
-
¡û
>W1910840310
MZXX01000014
Alphaproteobacteria
Mesorhizobium erdmanii Opo-242 [MZXX]
1005517
1005593
+
Pro
CGG
[ENA]
¡û
>W1911148368
NPEU01000115
Alphaproteobacteria
Rhodoplanes elegans DSM 11907 [NPEU]
13061
12985
-
Pro
CGG
[ENA]
¡û
>W1911148449
NPEW01000038
Alphaproteobacteria
Rhodoplanes serenus DSM 19946 [NPEW]
14356
14280
-
Pro
CGG
[ENA]
¡û
>W1911148515
NPEX01000161
Alphaproteobacteria
Rhodoplanes roseus DSM 5909 [NPEX]
7668
7744
+
Pro
CGG
[ENA]
¡û
>W1911242191
NSFO01000004
Alphaproteobacteria
Mesorhizobium loti R7ANSxCC1192 [NSFO]
330370
330446
+
Pro
CGG
[ENA]
¡û
>W1911242246
NSFP01000003
Alphaproteobacteria
Mesorhizobium loti R7ANSxAA22 [NSFP]
226830
226754
-
Pro
CGG
[ENA]
¡û
>W1911242295
NSFQ01000003
Alphaproteobacteria
Mesorhizobium loti R7ANSx3876 [NSFQ]
222020
221944
-
Pro
CGG
[ENA]
¡û
>W1911242347
NSFR01000005
Alphaproteobacteria
Mesorhizobium loti R7ANSx3859 [NSFR]
226830
226754
-
Pro
CGG
[ENA]
¡û
>W1911242393
NSFS01000002
Alphaproteobacteria
Mesorhizobium loti R7ANSx1497 [NSFS]
226830
226754
-
Pro
CGG
[ENA]
¡û
>W1911242453
NSFT01000004
Alphaproteobacteria
Mesorhizobium sp. WSM4313 [NSFT]
137786
137710
-
Pro
CGG
[ENA]
¡û
>W1911243070
NSGG01000002
Alphaproteobacteria
Mesorhizobium sp. WSM3859 [NSGG]
449532
449608
+
Pro
CGG
[ENA]
¡û
>W1911682382
QKOD01000002
Alphaproteobacteria
Mesorhizobium japonicum Opo-235 [QKOD]
913562
913638
+
Pro
CGG
[ENA]
¡û
>W1911695515
QMBQ01000001
Alphaproteobacteria
Mesorhizobium atlanticum CNPSo 3140 [QMBQ]
529797
529873
+
Pro
CGG
[ENA]
¡û
>W1810192915
PKMZ01000004
Alphaproteobacteria
Mangrovicella endophytica 5T4P-12-1 [PKMZ]
79366
79290
-
Pro
CGG
[ENA]
¡û
>W1810698983
QMBP01000001
Alphaproteobacteria
Mesorhizobium hawassense AC99b [QMBP]
782318
782242
-
Pro
CGG
[ENA]
¡û
>W1810789372
QRGO01000002
Alphaproteobacteria
Undibacter mobilis GY_H [QRGO]
598420
598344
-
Pro
CGG
[ENA]
¡û
>C151094744
CP012398
Alphaproteobacteria
Chelatococcus sp. CO-6 [CP012398]
2919234
2919310
+
Pro
CGG
-
¡û
>ENV09001069
ABSQ01025447
Freshwater sediment metagenome lwMethenol_C1
648
572
-
Pro
CGG
[ENA]
¡û
>W1510741124
CYHC01000004
Alphaproteobacteria
Chelatococcus sambhunathii DSM 18167 [CYHC]
154698
154622
-
Pro
CGG
[ENA]
¡û
>C11117268
CP002568
Alphaproteobacteria
Polymorphum gilvum SL003B-26A1 [CP002568]
3286288
3286364
+
Pro
CGG
[Ensembl]
¡û
>C161001643
AP014854
Alphaproteobacteria
Blastochloris viridis DSM 133 [AP014854]
2279789
2279865
+
Pro
CGG
[Ensembl]
¡û
>C161048023
CP012946
Alphaproteobacteria
Blastochloris viridis ATCC 19567 [CP012946]
2741403
2741327
-
Pro
CGG
-
¡û
>C161108101
LN907867
Alphaproteobacteria
Blastochloris viridis [LN907867]
2141364
2141288
-
Pro
CGG
[Ensembl]
¡û
>W121103201
AKZI01000008
Alphaproteobacteria
Rhodovulum sp. PH10 [AKZI]
5436
5360
-
Pro
CGG
[ENA]
¡û
>W121110775
ALIQ01000019
Alphaproteobacteria
Chelatococcus sp. GW1 [ALIQ]
25066
24990
-
Pro
CGG
[ENA]
¡û
>W1610057043
BBWT01000012
Alphaproteobacteria
Aureimonas ureilytica [BBWT]
64192
64268
+
Pro
CGG
[ENA]
¡û
>W1610083671
CCND01000012
Alphaproteobacteria
Mesorhizobium plurifarium [CCND]
200170
200094
-
Pro
CGG
[ENA]
¡û
>W1610631758
LIOL01000004
Alphaproteobacteria
Chelatococcus sambhunathii [LIOL]
154698
154622
-
Pro
CGG
[ENA]
¡û
>W1610726585
LMFS01000001
Alphaproteobacteria
Pseudolabrys sp. Root1462 [LMFS]
2837818
2837742
-
Pro
CGG
[ENA]
¡û
>W1610752691
LNDS01000039
Alphaproteobacteria
Rhizobiales bacterium Ga0077525 [LNDS]
42142
42066
-
Pro
CGG
[ENA]
¡û
>W1610858050
LQQT01000017
Alphaproteobacteria
Chelatococcus daeguensis [LQQT]
31589
31513
-
Pro
CGG
[ENA]
¡û
>W1611020092
LYTJ01000023
Alphaproteobacteria
Mesorhizobium loti [LYTJ]
258242
258318
+
Pro
CGG
[ENA]
¡û
>W1611044227
LZTH01000012
Alphaproteobacteria
Mesorhizobium loti [LZTH]
673661
673585
-
Pro
CGG
[ENA]
¡û
>W1611044284
LZTI01000012
Alphaproteobacteria
Mesorhizobium loti [LZTI]
647572
647648
+
Pro
CGG
[ENA]
¡û
>W1611044339
LZTJ01000012
Alphaproteobacteria
Mesorhizobium loti [LZTJ]
647572
647648
+
Pro
CGG
[ENA]
¡û
>W1611044388
LZTK01000008
Alphaproteobacteria
Mesorhizobium loti [LZTK]
844881
844805
-
Pro
CGG
[ENA]
¡û
>W1611044439
LZTL01000023
Alphaproteobacteria
Mesorhizobium loti [LZTL]
180749
180825
+
Pro
CGG
[ENA]
¡û
>W1710053742
BBWT01000012
Alphaproteobacteria
Aureimonas ureilytica [BBWT]
64192
64268
+
Pro
CGG
[ENA]
¡û
>W1710088688
CCND01000012
Alphaproteobacteria
Mesorhizobium plurifarium [CCND]
200170
200094
-
Pro
CGG
[ENA]
¡û
>W1710561262
FOOA01000003
Alphaproteobacteria
Aureimonas phyllosphaerae [FOOA]
236773
236849
+
Pro
CGG
[ENA]
¡û
>W1710601633
FUXL01000031
Alphaproteobacteria
Consotaella salsifontis USBA 369 [FUXL]
7353
7429
+
Pro
CGG
[ENA]
¡û
>W1710764643
LIOL01000004
Alphaproteobacteria
Chelatococcus sambhunathii [LIOL]
154698
154622
-
Pro
CGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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