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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.283529 (53 seq.)
>A171001583
CP002062
Euryarchaeota
Halalkalicoccus jeotgali B3 [CP002062]
2722205
2722277
+
Asn
GTT
-
¡û
>A171002631
CP002921
Euryarchaeota
Haloarcula hispanica ATCC 33960 CGMCC 1.2049 [CP002921, CP002922]
2652341
2652266
-
Asn
GTT
-
¡û
>A171003964
CP006884
Euryarchaeota
Haloarcula hispanica N601 [CP006884, CP006885]
2663774
2663699
-
Asn
GTT
-
¡û
>A171004168
CP007060
Euryarchaeota
Halobacterium sp. DL1 [CP007060]
505293
505365
+
Asn
GTT
-
¡û
>A171005821
CP010529
Euryarchaeota
Haloarcula sp. CBA1115 [CP010529]
1266736
1266661
-
Asn
GTT
-
¡û
>WENV180318641
OBKM01003417
[OBKM] metagenome; water
4479
4551
+
Asn
GTT
[ENA]
¢þ
>WENV180588354
OCOP01035018
[OCOP] marine metagenome; water
344
417
+
Asn
GTT
[ENA]
¢þ
>At0785
AY596297
Euryarchaeota
Haloarcula marismortui ATCC 43049 [AY596297, AY596298]
2046544
2046472
-
Asn
GTT
[Ensembl]
¡û
>WENV170661006
JXWU01081542
[JXWU] soil metagenome; rice field; organic control Plot
455
380
-
Asn
GTT
[ENA]
¢þ
>WENV170702561
LKMJ01002537
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
8294
8366
+
Asn
GTT
[ENA]
¢þ
>WENV170702930
LKMJ01004908
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
11471
11543
+
Asn
GTT
[ENA]
¢þ
>W1910006884
BBMO01000002
Euryarchaeota
Halapricum salinum CBA1105 [BBMO]
920366
920294
-
Asn
GTT
[ENA]
¡û
>W1910006920
BBMP01000022
Euryarchaeota
Halococcus sediminicola CBA1101 [BBMP]
732449
732521
+
Asn
GTT
[ENA]
¡û
>W1910175103
BIXZ01000002
Euryarchaeota
Haloarcula mannanilytica MD-130 MD130-1 [BIXZ]
538063
538138
+
Asn
GTT
[ENA]
¡û
>W1910228360
FNOF01000002
Euryarchaeota
Haloarcula vallismortis DSM 3756 [FNOF]
125523
125448
-
Asn
GTT
[ENA]
¡û
>W1910230805
FOZK01000002
Euryarchaeota
Halomicrobium zhouii CGMCC 1.10457 [FOZK]
99691
99619
-
Asn
GTT
[ENA]
¡û
>W1910282466
FRAN01000003
Euryarchaeota
Haladaptatus paucihalophilus DX253 [FRAN]
425707
425780
+
Asn
GTT
[ENA]
¡û
>W1910340444
FTNO01000001
Euryarchaeota
Haladaptatus litoreus CGMCC 1.7737 [FTNO]
192595
192668
+
Asn
GTT
[ENA]
¡û
>W1910568555
JDTH01000002
Euryarchaeota
Haladaptatus cibarius D43 [JDTH]
1734789
1734716
-
Asn
GTT
[ENA]
¡û
>W1910617588
LIUF01000002
Euryarchaeota
Haloarcula rubripromontorii SL3 [LIUF]
78629
78704
+
Asn
GTT
[ENA]
¡û
>W1910696310
MEIH01000393
Euryarchaeota
Haladaptatus sp. W1 [MEIH]
8003
8076
+
Asn
GTT
[ENA]
¡û
>W1911493149
OBEJ01000002
Euryarchaeota
Natronoarchaeum philippinense DSM 27208 [OBEJ]
96723
96795
+
Asn
GTT
[ENA]
¡û
>W1911693736
QLVG01000024
Euryarchaeota
Halorussus litoreus HD8-51 [QLVG]
1680
1753
+
Asn
GTT
[ENA]
¡û
>W1911709452
QPLN01000001
Euryarchaeota
Haloarcula sp. Atlit-120R [QPLN]
863256
863181
-
Asn
GTT
[ENA]
¡û
>W1911709589
QPLQ01000001
Euryarchaeota
Haloarcula sp. Atlit-47R [QPLQ]
903844
903769
-
Asn
GTT
[ENA]
¡û
>W1911770024
QXIK01000003
Euryarchaeota
Haloarcula sp. Atlit-7R [QXIK]
16352
16277
-
Asn
GTT
[ENA]
¡û
>W1911824345
QZWE01000013
Euryarchaeota
Halococcus sp. IIIV-5B [QZWE]
24548
24621
+
Asn
GTT
[ENA]
¡û
>W1610002976
AEMG01000009
Euryarchaeota
Haladaptatus paucihalophilus DX253 [AEMG]
345116
345189
+
Asn
GTT
[ENA]
¡û
>W1610004195
AGIR01000001
Euryarchaeota
Halobacterium sp. DL1 [AGIR]
6347
6272
-
Asn
GTT
[ENA]
¡û
>W1610005324
AJRK01000105
Euryarchaeota
Halococcus hamelinensis 100A6 [AJRK]
6096
6023
-
Asn
GTT
[ENA]
¡û
>W1610011851
AOHV01000027
Euryarchaeota
Halalkalicoccus jeotgali B3 [AOHV]
93440
93512
+
Asn
GTT
[ENA]
¡û
>W1610014125
AOLQ01000007
Euryarchaeota
Haloarcula vallismortis ATCC 29715 [AOLQ]
125428
125353
-
Asn
GTT
[ENA]
¡û
>W1610014176
AOLR01000008
Euryarchaeota
Haloarcula sinaiiensis ATCC 33800 [AOLR]
64919
64844
-
Asn
GTT
[ENA]
¡û
>W1610014230
AOLS01000062
Euryarchaeota
Haloarcula californiae ATCC 33799 [AOLS]
122951
122876
-
Asn
GTT
[ENA]
¡û
>W1610014257
AOLW01000007
Euryarchaeota
Haloarcula amylolytica JCM 13557 [AOLW]
127413
127488
+
Asn
GTT
[ENA]
¡û
>W1610014330
AOLX01000023
Euryarchaeota
Haloarcula argentinensis DSM 12282 [AOLX]
260599
260674
+
Asn
GTT
[ENA]
¡û
>W1610014372
AOLY01000006
Euryarchaeota
Haloarcula japonica DSM 6131 [AOLY]
67702
67627
-
Asn
GTT
[ENA]
¡û
>W1610014487
AOMB01000005
Euryarchaeota
Halococcus hamelinensis 100A6 [AOMB]
49684
49611
-
Asn
GTT
[ENA]
¡û
>W1610014534
AOMC01000046
Euryarchaeota
Halococcus morrhuae DSM 1307 [AOMC]
5884
5959
+
Asn
GTT
[ENA]
¡û
>W1610014589
AOMD01000025
Euryarchaeota
Halococcus saccharolyticus DSM 5350 [AOMD]
194690
194763
+
Asn
GTT
[ENA]
¡û
>W1610014648
AOME01000078
Euryarchaeota
Halococcus salifodinae DSM 8989 [AOME]
40210
40138
-
Asn
GTT
[ENA]
¡û
>W1610014667
AOMF01000148
Euryarchaeota
Halococcus thailandensis JCM 13552 [AOMF]
14474
14546
+
Asn
GTT
[ENA]
¡û
>W1610018852
AQXI01000001
Euryarchaeota
Haladaptatus paucihalophilus DX253 [AQXI]
2236324
2236251
-
Asn
GTT
[ENA]
¡û
>W1610029948
AXZD01000012
Euryarchaeota
Halalkalicoccus jeotgali B3 [AXZD]
285621
285693
+
Asn
GTT
[ENA]
¡û
>W1610040544
BAFM01000007
Euryarchaeota
Halococcus agarilyticus 197A [BAFM]
84263
84188
-
Asn
GTT
[ENA]
¡û
>W1610041525
BATA01000010
Euryarchaeota
Halarchaeum acidiphilum MH1-52-1 JCM 16109 [BATA]
14014
14086
+
Asn
GTT
[ENA]
¡û
>W1610061916
BCNA01000001
Euryarchaeota
Haloarcula sp. CBA1128 [BCNA]
1985093
1985018
-
Asn
GTT
[ENA]
¡û
>W1610061937
BCNB01000006
Euryarchaeota
Haloarcula sp. CBA1127 [BCNB]
962408
962483
+
Asn
GTT
[ENA]
¡û
>W1610085216
CEMQ01000001
Euryarchaeota
Halobacterium hubeiense JI20-7 [CEMQ]
109551
109623
+
Asn
GTT
[ENA]
¡û
>W1610085298
CEMZ01000001
Euryarchaeota
Halobacterium hubeiense JI20-8 [CEMZ]
109554
109626
+
Asn
GTT
[ENA]
¡û
>W1610881040
LRHL01000043
Euryarchaeota
Haloarcula sp. K1 [LRHL]
422348
422423
+
Asn
GTT
[ENA]
¡û
>W1610925025
LTAZ01000001
Euryarchaeota
Halalkalicoccus paucihalophilus DSM 24557 [LTAZ]
457301
457373
+
Asn
GTT
[ENA]
¡û
>W1610986941
LWHG01000021
Euryarchaeota
Haladaptatus sp. R4 [LWHG]
1030054
1029982
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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