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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.283531 (113 seq.)
>A171003094
CP003377
Euryarchaeota
Natronobacterium gregoryi SP2 [CP003377]
1638594
1638666
+
Asp
GTC
-
¡û
>A171003095
CP003377
Euryarchaeota
Natronobacterium gregoryi SP2 [CP003377]
1641501
1641573
+
Asp
GTC
-
¡û
>A171003152
CP003412
Euryarchaeota
Natrinema sp. J7-2 [CP003412]
205561
205634
+
Asp
GTC
-
¡û
>A171003153
CP003412
Euryarchaeota
Natrinema sp. J7-2 [CP003412]
206010
206083
+
Asp
GTC
-
¡û
>A171004161
CP007055
Euryarchaeota
Halostagnicola larsenii XH-48 [CP007055]
89019
88945
-
Asp
GTC
-
¡û
>A171004162
CP007055
Euryarchaeota
Halostagnicola larsenii XH-48 [CP007055]
88534
88461
-
Asp
GTC
-
¡û
>A171004167
CP007060
Euryarchaeota
Halobacterium sp. DL1 [CP007060]
354003
354076
+
Asp
GTC
-
¡û
>A171006907
CP019285
Euryarchaeota
Halobiforma lacisalsi AJ5 [CP019285]
671334
671406
+
Asp
GTC
-
¡û
>WENV180318236
OBKM01000164
[OBKM] metagenome; water
22051
21976
-
Asp
GTC
[ENA]
¢þ
>WENV180318740
OBKM01007479
[OBKM] metagenome; water
1066
992
-
Asp
GTC
[ENA]
¢þ
>WENV170659906
JXWS01030648
[JXWS] soil metagenome; rice field; elevated CO2
657
585
-
Asp
GTC
[ENA]
¢þ
>WENV170679598
LFCJ01000064
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
40376
40449
+
Asp
GTC
[ENA]
¢þ
>WENV170680050
LFCJ01003058
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
8473
8545
+
Asp
GTC
[ENA]
¢þ
>WENV170680051
LFCJ01003058
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
8874
8946
+
Asp
GTC
[ENA]
¢þ
>WENV170682323
LFFM01009242
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
1353
1281
-
Asp
GTC
[ENA]
¢þ
>WENV170703250
LKMJ01008484
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
185
112
-
Asp
GTC
[ENA]
¢þ
>WENV170703869
LKMJ01017754
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
3527
3454
-
Asp
GTC
[ENA]
¢þ
>W1910227000
FNHL01000001
Euryarchaeota
Halogranum gelatinilyticum CGMCC 1.10119 [FNHL]
496599
496526
-
Asp
GTC
[ENA]
¡û
>W1910227001
FNHL01000001
Euryarchaeota
Halogranum gelatinilyticum CGMCC 1.10119 [FNHL]
495667
495595
-
Asp
GTC
[ENA]
¡û
>W1910227002
FNHL01000001
Euryarchaeota
Halogranum gelatinilyticum CGMCC 1.10119 [FNHL]
495546
495472
-
Asp
GTC
[ENA]
¡û
>W1910227150
FNLC01000003
Euryarchaeota
Natronobacterium texcoconense DSM 24767 [FNLC]
40918
40990
+
Asp
GTC
[ENA]
¡û
>W1910227151
FNLC01000003
Euryarchaeota
Natronobacterium texcoconense DSM 24767 [FNLC]
43861
43934
+
Asp
GTC
[ENA]
¡û
>W1910229758
FODV01000003
Euryarchaeota
Halogranum amylolyticum CGMCC 1.10121 [FODV]
753
680
-
Asp
GTC
[ENA]
¡û
>W1910229759
FODV01000003
Euryarchaeota
Halogranum amylolyticum CGMCC 1.10121 [FODV]
95
22
-
Asp
GTC
[ENA]
¡û
>W1910229776
FODV01000021
Euryarchaeota
Halogranum amylolyticum CGMCC 1.10121 [FODV]
22
97
+
Asp
GTC
[ENA]
¡û
>W1910230263
FOKW01000013
Euryarchaeota
Halobiforma haloterrestris DSM 13078 [FOKW]
67229
67301
+
Asp
GTC
[ENA]
¡û
>W1910230428
FORO01000003
Euryarchaeota
Natronobacterium gregoryi SP2 [FORO]
14668
14740
+
Asp
GTC
[ENA]
¡û
>W1910230429
FORO01000003
Euryarchaeota
Natronobacterium gregoryi SP2 [FORO]
17575
17647
+
Asp
GTC
[ENA]
¡û
>W1910230843
FOZS01000001
Euryarchaeota
Halostagnicola kamekurae DSM 22427 [FOZS]
330068
329994
-
Asp
GTC
[ENA]
¡û
>W1910230844
FOZS01000001
Euryarchaeota
Halostagnicola kamekurae DSM 22427 [FOZS]
329514
329441
-
Asp
GTC
[ENA]
¡û
>W1910282462
FRAN01000003
Euryarchaeota
Haladaptatus paucihalophilus DX253 [FRAN]
271008
271081
+
Asp
GTC
[ENA]
¡û
>W1910282463
FRAN01000003
Euryarchaeota
Haladaptatus paucihalophilus DX253 [FRAN]
271878
271951
+
Asp
GTC
[ENA]
¡û
>W1910340473
FTNO01000001
Euryarchaeota
Haladaptatus litoreus CGMCC 1.7737 [FTNO]
253956
253883
-
Asp
GTC
[ENA]
¡û
>W1910340474
FTNO01000001
Euryarchaeota
Haladaptatus litoreus CGMCC 1.7737 [FTNO]
252998
252926
-
Asp
GTC
[ENA]
¡û
>W1910340555
FTNR01000010
Euryarchaeota
Natronorubrum thiooxidans type strain: HArc- [FTNR]
150610
150683
+
Asp
GTC
[ENA]
¡û
>W1910340566
FTNR01000038
Euryarchaeota
Natronorubrum thiooxidans type strain: HArc- [FTNR]
802
875
+
Asp
GTC
[ENA]
¡û
>W1910340567
FTNR01000038
Euryarchaeota
Natronorubrum thiooxidans type strain: HArc- [FTNR]
1060
1133
+
Asp
GTC
[ENA]
¡û
>W1910568505
JDTG01000010
Euryarchaeota
Natrinema thermotolerans A29 [JDTG]
55089
55016
-
Asp
GTC
[ENA]
¡û
>W1910568506
JDTG01000010
Euryarchaeota
Natrinema thermotolerans A29 [JDTG]
54650
54577
-
Asp
GTC
[ENA]
¡û
>W1910568551
JDTH01000002
Euryarchaeota
Haladaptatus cibarius D43 [JDTH]
1671627
1671699
+
Asp
GTC
[ENA]
¡û
>W1910568552
JDTH01000002
Euryarchaeota
Haladaptatus cibarius D43 [JDTH]
1672576
1672649
+
Asp
GTC
[ENA]
¡û
>W1910569070
JHUT02000003
Euryarchaeota
Natrinema mahii H13 [JHUT]
196761
196688
-
Asp
GTC
[ENA]
¡û
>W1910569071
JHUT02000003
Euryarchaeota
Natrinema mahii H13 [JHUT]
196324
196251
-
Asp
GTC
[ENA]
¡û
>W1910572730
JNCS01000011
Euryarchaeota
Natrinema altunense AJ2 [JNCS]
114009
113936
-
Asp
GTC
[ENA]
¡û
>W1910572731
JNCS01000011
Euryarchaeota
Natrinema altunense AJ2 [JNCS]
113705
113632
-
Asp
GTC
[ENA]
¡û
>W1910583021
JXAN01000068
Euryarchaeota
Natrinema altunense 1A4-DGR [JXAN]
18799
18872
+
Asp
GTC
[ENA]
¡û
>W1910583033
JXAN01000203
Euryarchaeota
Natrinema altunense 1A4-DGR [JXAN]
158
85
-
Asp
GTC
[ENA]
¡û
>W1910696268
MEIH01000008
Euryarchaeota
Haladaptatus sp. W1 [MEIH]
5711
5638
-
Asp
GTC
[ENA]
¡û
>W1910696269
MEIH01000008
Euryarchaeota
Haladaptatus sp. W1 [MEIH]
4840
4767
-
Asp
GTC
[ENA]
¡û
>W1911433982
NXNI01000001
Euryarchaeota
Natrinema ejinorense JCM 13890 [NXNI]
3112686
3112759
+
Asp
GTC
[ENA]
¡û
>W1911433983
NXNI01000001
Euryarchaeota
Natrinema ejinorense JCM 13890 [NXNI]
3113057
3113130
+
Asp
GTC
[ENA]
¡û
>W1911572212
PDBS01000001
Euryarchaeota
Natrinema sp. CBA1119 [PDBS]
1260091
1260164
+
Asp
GTC
[ENA]
¡û
>W1911572213
PDBS01000001
Euryarchaeota
Natrinema sp. CBA1119 [PDBS]
1260430
1260503
+
Asp
GTC
[ENA]
¡û
>W1911591319
PKKI01000004
Euryarchaeota
Natronobacterium gregoryi SP2 [PKKI]
128720
128648
-
Asp
GTC
[ENA]
¡û
>W1911591320
PKKI01000004
Euryarchaeota
Natronobacterium gregoryi SP2 [PKKI]
125813
125741
-
Asp
GTC
[ENA]
¡û
>W1911629762
PSYS01000001
Euryarchaeota
Haloferax sp. Atlit-47N [PSYS]
1295163
1295236
+
Asp
GTC
[ENA]
¡û
>W1911629763
PSYS01000001
Euryarchaeota
Haloferax sp. Atlit-47N [PSYS]
1295265
1295337
+
Asp
GTC
[ENA]
¡û
>W1911655685
QEQI01000001
Euryarchaeota
Haloferax sp. Atlit-48N [QEQI]
1276718
1276791
+
Asp
GTC
[ENA]
¡û
>W1911655686
QEQI01000001
Euryarchaeota
Haloferax sp. Atlit-48N [QEQI]
1276820
1276892
+
Asp
GTC
[ENA]
¡û
>W1911693759
QLVG01000060
Euryarchaeota
Halorussus litoreus HD8-51 [QLVG]
25183
25111
-
Asp
GTC
[ENA]
¡û
>W1911717997
QQTY01000004
Euryarchaeota
Natronorubrum halophilum SHR37 [QQTY]
150876
150949
+
Asp
GTC
[ENA]
¡û
>W1911717998
QQTY01000004
Euryarchaeota
Natronorubrum halophilum SHR37 [QQTY]
151099
151172
+
Asp
GTC
[ENA]
¡û
>W1610002972
AEMG01000009
Euryarchaeota
Haladaptatus paucihalophilus DX253 [AEMG]
190417
190490
+
Asp
GTC
[ENA]
¡û
>W1610002973
AEMG01000009
Euryarchaeota
Haladaptatus paucihalophilus DX253 [AEMG]
191287
191360
+
Asp
GTC
[ENA]
¡û
>W1610004047
AGFZ01000017
Euryarchaeota
Halobiforma lacisalsi AJ5 [AGFZ]
8338
8266
-
Asp
GTC
[ENA]
¡û
>W1610004093
AGIM01000005
Euryarchaeota
Natronobacterium gregoryi SP2 [AGIM]
136106
136034
-
Asp
GTC
[ENA]
¡û
>W1610004094
AGIM01000005
Euryarchaeota
Natronobacterium gregoryi SP2 [AGIM]
133199
133127
-
Asp
GTC
[ENA]
¡û
>W1610004194
AGIR01000001
Euryarchaeota
Halobacterium sp. DL1 [AGIR]
157637
157564
-
Asp
GTC
[ENA]
¡û
>W1610005353
AJVG01000001
Euryarchaeota
Natrinema sp. J7-1 [AJVG]
109370
109443
+
Asp
GTC
[ENA]
¡û
>W1610005354
AJVG01000001
Euryarchaeota
Natrinema sp. J7-1 [AJVG]
109819
109892
+
Asp
GTC
[ENA]
¡û
>W1610011951
AOHX01000029
Euryarchaeota
Natronorubrum sulfidifaciens JCM 14089 [AOHX]
50950
51023
+
Asp
GTC
[ENA]
¡û
>W1610011952
AOHX01000029
Euryarchaeota
Natronorubrum sulfidifaciens JCM 14089 [AOHX]
51576
51649
+
Asp
GTC
[ENA]
¡û
>W1610011953
AOHX01000029
Euryarchaeota
Natronorubrum sulfidifaciens JCM 14089 [AOHX]
51661
51734
+
Asp
GTC
[ENA]
¡û
>W1610011991
AOHY01000010
Euryarchaeota
Natronorubrum bangense JCM 10635 [AOHY]
97324
97251
-
Asp
GTC
[ENA]
¡û
>W1610011992
AOHY01000010
Euryarchaeota
Natronorubrum bangense JCM 10635 [AOHY]
97066
96993
-
Asp
GTC
[ENA]
¡û
>W1610011993
AOHY01000010
Euryarchaeota
Natronorubrum bangense JCM 10635 [AOHY]
96980
96907
-
Asp
GTC
[ENA]
¡û
>W1610011994
AOHY01000010
Euryarchaeota
Natronorubrum bangense JCM 10635 [AOHY]
96724
96651
-
Asp
GTC
[ENA]
¡û
>W1610012168
AOIC01000061
Euryarchaeota
Natronobacterium gregoryi SP2 [AOIC]
35864
35792
-
Asp
GTC
[ENA]
¡û
>W1610012169
AOIC01000061
Euryarchaeota
Natronobacterium gregoryi SP2 [AOIC]
32957
32885
-
Asp
GTC
[ENA]
¡û
>W1610012222
AOID01000048
Euryarchaeota
Natrinema versiforme JCM 10478 [AOID]
47693
47620
-
Asp
GTC
[ENA]
¡û
>W1610012223
AOID01000048
Euryarchaeota
Natrinema versiforme JCM 10478 [AOID]
47148
47075
-
Asp
GTC
[ENA]
¡û
>W1610012270
AOIE01000104
Euryarchaeota
Natrinema pellirubrum DSM 15624 [AOIE]
45819
45892
+
Asp
GTC
[ENA]
¡û
>W1610012271
AOIE01000104
Euryarchaeota
Natrinema pellirubrum DSM 15624 [AOIE]
45896
45969
+
Asp
GTC
[ENA]
¡û
>W1610012272
AOIE01000104
Euryarchaeota
Natrinema pellirubrum DSM 15624 [AOIE]
46345
46418
+
Asp
GTC
[ENA]
¡û
>W1610012273
AOIE01000104
Euryarchaeota
Natrinema pellirubrum DSM 15624 [AOIE]
46441
46514
+
Asp
GTC
[ENA]
¡û
>W1610012285
AOII01000020
Euryarchaeota
Natrinema pallidum DSM 3751 [AOII]
75240
75313
+
Asp
GTC
[ENA]
¡û
>W1610012286
AOII01000020
Euryarchaeota
Natrinema pallidum DSM 3751 [AOII]
75330
75403
+
Asp
GTC
[ENA]
¡û
>W1610012287
AOII01000020
Euryarchaeota
Natrinema pallidum DSM 3751 [AOII]
75769
75842
+
Asp
GTC
[ENA]
¡û
>W1610012288
AOII01000020
Euryarchaeota
Natrinema pallidum DSM 3751 [AOII]
75857
75930
+
Asp
GTC
[ENA]
¡û
>W1610012348
AOIJ01000055
Euryarchaeota
Natrinema gari JCM 14663 [AOIJ]
28794
28721
-
Asp
GTC
[ENA]
¡û
>W1610012349
AOIJ01000055
Euryarchaeota
Natrinema gari JCM 14663 [AOIJ]
28717
28644
-
Asp
GTC
[ENA]
¡û
>W1610012350
AOIJ01000055
Euryarchaeota
Natrinema gari JCM 14663 [AOIJ]
28268
28195
-
Asp
GTC
[ENA]
¡û
>W1610012351
AOIJ01000055
Euryarchaeota
Natrinema gari JCM 14663 [AOIJ]
28191
28118
-
Asp
GTC
[ENA]
¡û
>W1610012399
AOIK01000035
Euryarchaeota
Natrinema altunense JCM 12890 [AOIK]
272890
272817
-
Asp
GTC
[ENA]
¡û
>W1610012400
AOIK01000035
Euryarchaeota
Natrinema altunense JCM 12890 [AOIK]
272510
272437
-
Asp
GTC
[ENA]
¡û
>W1610012401
AOIK01000035
Euryarchaeota
Natrinema altunense JCM 12890 [AOIK]
272429
272356
-
Asp
GTC
[ENA]
¡û
>W1610012437
AOIL01000048
Euryarchaeota
Natrialba taiwanensis DSM 12281 [AOIL]
44943
44871
-
Asp
GTC
[ENA]
¡û
>W1610012438
AOIL01000048
Euryarchaeota
Natrialba taiwanensis DSM 12281 [AOIL]
44507
44435
-
Asp
GTC
[ENA]
¡û
>W1610012601
AOIP01000016
Euryarchaeota
Natrialba aegyptia DSM 13077 [AOIP]
154610
154682
+
Asp
GTC
[ENA]
¡û
>W1610012686
AOIR01000053
Euryarchaeota
Natrinema thermotolerans DSM 11522 [AOIR]
21332
21260
-
Asp
GTC
[ENA]
¡û
>W1610012687
AOIR01000053
Euryarchaeota
Natrinema thermotolerans DSM 11522 [AOIR]
21256
21183
-
Asp
GTC
[ENA]
¡û
>W1610012688
AOIR01000053
Euryarchaeota
Natrinema thermotolerans DSM 11522 [AOIR]
20746
20673
-
Asp
GTC
[ENA]
¡û
>W1610014416
AOLZ01000029
Euryarchaeota
Halobiforma lacisalsi AJ5 [AOLZ]
78414
78486
+
Asp
GTC
[ENA]
¡û
>W1610014474
AOMA01000154
Euryarchaeota
Halobiforma nitratireducens JCM 10879 [AOMA]
8512
8587
+
Asp
GTC
[ENA]
¡û
>W1610014475
AOMA01000154
Euryarchaeota
Halobiforma nitratireducens JCM 10879 [AOMA]
8602
8677
+
Asp
GTC
[ENA]
¡û
>W1610014476
AOMA01000154
Euryarchaeota
Halobiforma nitratireducens JCM 10879 [AOMA]
11941
12016
+
Asp
GTC
[ENA]
¡û
>W1610014477
AOMA01000154
Euryarchaeota
Halobiforma nitratireducens JCM 10879 [AOMA]
12026
12101
+
Asp
GTC
[ENA]
¡û
>W1610018848
AQXI01000001
Euryarchaeota
Haladaptatus paucihalophilus DX253 [AQXI]
2391023
2390950
-
Asp
GTC
[ENA]
¡û
>W1610018849
AQXI01000001
Euryarchaeota
Haladaptatus paucihalophilus DX253 [AQXI]
2390153
2390080
-
Asp
GTC
[ENA]
¡û
>W1610083011
CBMB010000003
Euryarchaeota
Halopiger goleimassiliensis IIH3 [CBMB]
620679
620752
+
Asp
GTC
[ENA]
¡û
>W1610083012
CBMB010000003
Euryarchaeota
Halopiger goleimassiliensis IIH3 [CBMB]
620961
621034
+
Asp
GTC
[ENA]
¡û
>W1610986946
LWHG01000021
Euryarchaeota
Haladaptatus sp. R4 [LWHG]
737898
737825
-
Asp
GTC
[ENA]
¡û
>W1610986947
LWHG01000021
Euryarchaeota
Haladaptatus sp. R4 [LWHG]
737076
737004
-
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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