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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.283533 (74 seq.)
>A171000430
CP001365
Euryarchaeota
Halorubrum lacusprofundi ATCC 49239 [CP001365, CP001366]
502186
502258
+
Gln
TTG
-
¡û
>A171000838
CP001690
Euryarchaeota
Halogeometricum borinquense DSM 11551 PR 3 [CP001690]
2257469
2257397
-
Gln
TTG
-
¡û
>A171001590
CP002062
Euryarchaeota
Halalkalicoccus jeotgali B3 [CP002062]
2245243
2245171
-
Gln
TTG
-
¡û
>A171002635
CP002921
Euryarchaeota
Haloarcula hispanica ATCC 33960 CGMCC 1.2049 [CP002921, CP002922]
2264412
2264340
-
Gln
TTG
-
¡û
>A171003968
CP006884
Euryarchaeota
Haloarcula hispanica N601 [CP006884, CP006885]
2275845
2275773
-
Gln
TTG
-
¡û
>A171005825
CP010529
Euryarchaeota
Haloarcula sp. CBA1115 [CP010529]
880052
879979
-
Gln
TTG
-
¡û
>WENV180318736
OBKM01007321
[OBKM] metagenome; water
2152
2080
-
Gln
TTG
[ENA]
¢þ
>WENV180318993
OBKM01148287
[OBKM] metagenome; water
1
73
+
Gln
TTG
[ENA]
¢þ
>At0781
AY596297
Euryarchaeota
Haloarcula marismortui ATCC 43049 [AY596297, AY596298]
1624366
1624294
-
Gln
TTG
[Ensembl]
¡û
>WENV170660021
JXWS01091371
[JXWS] soil metagenome; rice field; elevated CO2
3
76
+
Gln
TTG
[ENA]
¢þ
>WENV170681152
LFFM01000132
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
38431
38358
-
Gln
TTG
[ENA]
¢þ
>WENV170681264
LFFM01000325
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
125
53
-
Gln
TTG
[ENA]
¢þ
>WENV170681289
LFFM01000384
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
11138
11211
+
Gln
TTG
[ENA]
¢þ
>WENV170681646
LFFM01001840
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
14434
14362
-
Gln
TTG
[ENA]
¢þ
>WENV170681736
LFFM01002371
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
8452
8524
+
Gln
TTG
[ENA]
¢þ
>WENV170681741
LFFM01002448
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
55
128
+
Gln
TTG
[ENA]
¢þ
>WENV170681804
LFFM01002940
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
3938
3863
-
Gln
TTG
[ENA]
¢þ
>WENV170682328
LFFM01009300
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
73
1
-
Gln
TTG
[ENA]
¢þ
>WENV170703288
LKMJ01008954
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
7603
7531
-
Gln
TTG
[ENA]
¢þ
>W1910006753
BBJP01000018
Euryarchaeota
Halorubrum halophilum B8 [BBJP]
60200
60128
-
Gln
TTG
[ENA]
¡û
>W1910006912
BBMP01000022
Euryarchaeota
Halococcus sediminicola CBA1101 [BBMP]
115332
115404
+
Gln
TTG
[ENA]
¡û
>W1910175120
BIXZ01000005
Euryarchaeota
Haloarcula mannanilytica MD-130 MD130-1 [BIXZ]
190861
190789
-
Gln
TTG
[ENA]
¡û
>W1910193735
CVRT01000046
Euryarchaeota
Halorubrum sp. SD626R [CVRT]
18699
18627
-
Gln
TTG
[ENA]
¡û
>W1910227101
FNKQ01000002
Euryarchaeota
Halopelagius longus CGMCC 1.12397 [FNKQ]
956447
956374
-
Gln
TTG
[ENA]
¡û
>W1910228387
FNOF01000005
Euryarchaeota
Haloarcula vallismortis DSM 3756 [FNOF]
208688
208615
-
Gln
TTG
[ENA]
¡û
>W1910230343
FOOQ01000001
Euryarchaeota
Halopelagius inordinatus CGMCC 1.7739 [FOOQ]
748515
748587
+
Gln
TTG
[ENA]
¡û
>W1910230700
FOYS01000002
Euryarchaeota
Halogeometricum limi CGMCC 1.8711 [FOYS]
683593
683520
-
Gln
TTG
[ENA]
¡û
>W1910230734
FOYT01000001
Euryarchaeota
Halogeometricum rufum CGMCC 1.7736 [FOYT]
1047945
1048017
+
Gln
TTG
[ENA]
¡û
>W1910547261
FZNQ01000003
Euryarchaeota
Halorubrum vacuolatum DSM 8800 [FZNQ]
243059
243131
+
Gln
TTG
[ENA]
¡û
>W1910568566
JDTH01000002
Euryarchaeota
Haladaptatus cibarius D43 [JDTH]
503046
502974
-
Gln
TTG
[ENA]
¡û
>W1910572761
JNFH02000050
Euryarchaeota
Halorubrum saccharovorum H3 [JNFH]
5040
4968
-
Gln
TTG
[ENA]
¡û
>W1910575010
JQKV01000003
Euryarchaeota
Halorubrum sp. BV1 [JQKV]
97070
96998
-
Gln
TTG
[ENA]
¡û
>W1910617592
LIUF01000002
Euryarchaeota
Haloarcula rubripromontorii SL3 [LIUF]
486317
486389
+
Gln
TTG
[ENA]
¡û
>W1910749496
MJCD01000008
Euryarchaeota
Halorubrum lacusprofundi HLS1 [MJCD]
95101
95029
-
Gln
TTG
[ENA]
¡û
>W1910752233
MKFG01000001
Euryarchaeota
Halorubrum lacusprofundi DL18 [MKFG]
620670
620598
-
Gln
TTG
[ENA]
¡û
>W1910911733
NHOA01000048
Euryarchaeota
Halorubrum persicum C49 [NHOA]
15475
15402
-
Gln
TTG
[ENA]
¡û
>W1910911769
NHOB01000332
Euryarchaeota
Halorubrum sp. C3 [NHOB]
543
615
+
Gln
TTG
[ENA]
¡û
>W1911682230
QKMU01000001
Euryarchaeota
Halogeometricum sp. wsp3 [QKMU]
1588097
1588024
-
Gln
TTG
[ENA]
¡û
>W1911696746
QMIM01000031
Euryarchaeota
Halorubrum sp. 48-1-W [QMIM]
31804
31731
-
Gln
TTG
[ENA]
¡û
>W1911696804
QNGA01000001
Euryarchaeota
halophilic archaeon H22 [QNGA]
1380053
1380125
+
Gln
TTG
[ENA]
¡û
>W1911709456
QPLN01000001
Euryarchaeota
Haloarcula sp. Atlit-120R [QPLN]
478717
478645
-
Gln
TTG
[ENA]
¡û
>W1911709593
QPLQ01000001
Euryarchaeota
Haloarcula sp. Atlit-47R [QPLQ]
438196
438124
-
Gln
TTG
[ENA]
¡û
>W1911717779
QQRR01000001
Euryarchaeota
Haloprofundus halophilus NK23 [QQRR]
862892
862820
-
Gln
TTG
[ENA]
¡û
>W1911717845
QQST01000001
Euryarchaeota
Halopelagius longus BC12-B1 [QQST]
1000500
1000427
-
Gln
TTG
[ENA]
¡û
>W1911770012
QXIK01000002
Euryarchaeota
Haloarcula sp. Atlit-7R [QXIK]
426863
426935
+
Gln
TTG
[ENA]
¡û
>W1610000524
ABEB01000007
Euryarchaeota
Halorubrum lacusprofundi ATCC 49239 [ABEB]
61157
61085
-
Gln
TTG
[ENA]
¡û
>W1610000779
ABTX01000001
Euryarchaeota
Halogeometricum borinquense DSM 11551 [ABTX]
643543
643471
-
Gln
TTG
[ENA]
¡û
>W1610011785
AOHT01000050
Euryarchaeota
Halogeometricum borinquense DSM 11551 [AOHT]
111771
111843
+
Gln
TTG
[ENA]
¡û
>W1610011853
AOHV01000027
Euryarchaeota
Halalkalicoccus jeotgali B3 [AOHV]
183018
183090
+
Gln
TTG
[ENA]
¡û
>W1610012879
AOIV01000041
Euryarchaeota
Halogeometricum pallidum JCM 14848 [AOIV]
318086
318158
+
Gln
TTG
[ENA]
¡û
>W1610012891
AOIW01000041
Euryarchaeota
Halorubrum terrestre JCM 10247 [AOIW]
32407
32335
-
Gln
TTG
[ENA]
¡û
>W1610013026
AOJF01000030
Euryarchaeota
Halorubrum litoreum JCM 13561 [AOJF]
250018
249946
-
Gln
TTG
[ENA]
¡û
>W1610013073
AOJG01000015
Euryarchaeota
Halorubrum lipolyticum DSM 21995 [AOJG]
50355
50283
-
Gln
TTG
[ENA]
¡û
>W1610013132
AOJH01000072
Euryarchaeota
Halorubrum kocurii JCM 14978 [AOJH]
16238
16311
+
Gln
TTG
[ENA]
¡û
>W1610013145
AOJI01000011
Euryarchaeota
Halorubrum aidingense JCM 13560 [AOJI]
41047
41119
+
Gln
TTG
[ENA]
¡û
>W1610013202
AOJJ01000052
Euryarchaeota
Halorubrum arcis JCM 13916 [AOJJ]
29317
29245
-
Gln
TTG
[ENA]
¡û
>W1610013324
AOJM01000002
Euryarchaeota
Halorubrum distributum JCM 9100 [AOJM]
9180
9108
-
Gln
TTG
[ENA]
¡û
>W1610013385
AOJN01000038
Euryarchaeota
Halorubrum distributum JCM 10118 [AOJN]
6623
6551
-
Gln
TTG
[ENA]
¡û
>W1610014144
AOLQ01000042
Euryarchaeota
Haloarcula vallismortis ATCC 29715 [AOLQ]
208593
208520
-
Gln
TTG
[ENA]
¡û
>W1610014166
AOLR01000003
Euryarchaeota
Haloarcula sinaiiensis ATCC 33800 [AOLR]
160718
160646
-
Gln
TTG
[ENA]
¡û
>W1610014217
AOLS01000038
Euryarchaeota
Haloarcula californiae ATCC 33799 [AOLS]
265335
265407
+
Gln
TTG
[ENA]
¡û
>W1610014286
AOLW01000046
Euryarchaeota
Haloarcula amylolytica JCM 13557 [AOLW]
76346
76418
+
Gln
TTG
[ENA]
¡û
>W1610014339
AOLX01000026
Euryarchaeota
Haloarcula argentinensis DSM 12282 [AOLX]
383
455
+
Gln
TTG
[ENA]
¡û
>W1610014375
AOLY01000007
Euryarchaeota
Haloarcula japonica DSM 6131 [AOLY]
321908
321980
+
Gln
TTG
[ENA]
¡û
>W1610014527
AOMC01000015
Euryarchaeota
Halococcus morrhuae DSM 1307 [AOMC]
24269
24197
-
Gln
TTG
[ENA]
¡û
>W1610014660
AOMF01000145
Euryarchaeota
Halococcus thailandensis JCM 13552 [AOMF]
160789
160717
-
Gln
TTG
[ENA]
¡û
>W1610029941
AXZD01000009
Euryarchaeota
Halalkalicoccus jeotgali B3 [AXZD]
235972
235900
-
Gln
TTG
[ENA]
¡û
>W1610061920
BCNA01000001
Euryarchaeota
Haloarcula sp. CBA1128 [BCNA]
1598405
1598332
-
Gln
TTG
[ENA]
¡û
>W1610061941
BCNB01000006
Euryarchaeota
Haloarcula sp. CBA1127 [BCNB]
1360057
1360129
+
Gln
TTG
[ENA]
¡û
>W1610779616
LOAJ01000001
Euryarchaeota
Halorubrum aethiopicum SAH-A6 [LOAJ]
1148759
1148834
+
Gln
TTG
[ENA]
¡û
>W1610799791
LOPU01000018
Euryarchaeota
Haloprofundus marisrubri SB9 [LOPU]
190293
190368
+
Gln
TTG
[ENA]
¡û
>W1610881044
LRHL01000043
Euryarchaeota
Haloarcula sp. K1 [LRHL]
814582
814655
+
Gln
TTG
[ENA]
¡û
>W1610925052
LTAZ01000005
Euryarchaeota
Halalkalicoccus paucihalophilus DSM 24557 [LTAZ]
602844
602772
-
Gln
TTG
[ENA]
¡û
>W1610986955
LWHG01000028
Euryarchaeota
Haladaptatus sp. R4 [LWHG]
432848
432776
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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