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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.283565 (29 seq.)
>C171063397
CP017480
Gammaproteobacteria
Luteibacter rhizovicinus DSM 16549 LJ96 [CP017480]
16308
16232
-
Arg
ACG
-
¡û
>WENV180017626
FSXK01001892
[FSXK] metagenome; soil
12134
12058
-
Arg
ACG
[ENA]
¢þ
>WENV183697505
OUNK010000066
[OUNK] metagenome; soil
21676
21752
+
Arg
ACG
[ENA]
¢þ
>C191186025
CP041046
Gammaproteobacteria
Luteibacter pinisoli MAH-14 [CP041046]
3033664
3033588
-
Arg
ACG
-
¡û
>W141820707
JQNB01000001
Gammaproteobacteria
Luteibacter sp. 9135 [JQNB]
4116796
4116720
-
Arg
ACG
[ENA]
¡û
>W141820785
JQND01000001
Gammaproteobacteria
Luteibacter sp. 9145 [JQND]
1659980
1660056
+
Arg
ACG
[ENA]
¡û
>W141821280
JQNL01000001
Gammaproteobacteria
Luteibacter sp. 9143a 9143 [JQNL]
707311
707235
-
Arg
ACG
[ENA]
¡û
>W1810477574
QAOX01000006
Gammaproteobacteria
Luteibacter sp. OK325 [QAOX]
289997
289921
-
Arg
ACG
[ENA]
¡û
>W1810785102
QRBE01000008
Gammaproteobacteria
Dyella monticola 4G-K06 [QRBE]
80698
80622
-
Arg
ACG
[ENA]
¡û
>W1511305109
JPLB01000053
Gammaproteobacteria
Luteibacter rhizovicinus DSM 16549 [JPLB]
87313
87237
-
Arg
ACG
[ENA]
¡û
>W1511305279
JPLD01000306
Gammaproteobacteria
Xanthomonas hyacinthi DSM 19077 [JPLD]
5198
5274
+
Arg
ACG
[ENA]
¡û
>W1511433910
JUHO01000001
Gammaproteobacteria
Luteibacter sp. 9133 [JUHO]
2771296
2771220
-
Arg
ACG
[ENA]
¡û
>W1511547555
JZRB01000003
Gammaproteobacteria
Luteibacter yeojuensis SU11 [JZRB]
132392
132316
-
Arg
ACG
[ENA]
¡û
>C121011589
CP003350
Gammaproteobacteria
Frateuria aurantia DSM 6220 [CP003350]
1981094
1981018
-
Arg
ACG
[Ensembl]
¡û
>C121011594
CP003350
Gammaproteobacteria
Frateuria aurantia DSM 6220 [CP003350]
1980414
1980338
-
Arg
ACG
[Ensembl]
¡û
>C121011597
CP003350
Gammaproteobacteria
Frateuria aurantia DSM 6220 [CP003350]
1979969
1979893
-
Arg
ACG
[Ensembl]
¡û
>W121017561
AGRV01000013
Gammaproteobacteria
Frateuria aurantia DSM 6220 [AGRV]
719517
719593
+
Arg
ACG
[ENA]
¡û
>W121017566
AGRV01000013
Gammaproteobacteria
Frateuria aurantia DSM 6220 [AGRV]
720197
720273
+
Arg
ACG
[ENA]
¡û
>W121017569
AGRV01000013
Gammaproteobacteria
Frateuria aurantia DSM 6220 [AGRV]
720642
720718
+
Arg
ACG
[ENA]
¡û
>W121071214
AJXS01000394
Gammaproteobacteria
Rhodanobacter sp. 115 [AJXS]
12508
12432
-
Arg
ACG
[ENA]
¡û
>W1610616801
LGRQ01000789
Gammaproteobacteria
Luteibacter rhizovicinus [LGRQ]
694
618
-
Arg
ACG
[ENA]
¡û
>W1710515253
FNBR01000001
Gammaproteobacteria
Dyella sp. 333MFSha [FNBR]
513159
513235
+
Arg
ACG
[ENA]
¡û
>W1710545802
FOBU01000002
Gammaproteobacteria
Luteibacter sp. UNCMF331Sha3.1 [FOBU]
840931
841007
+
Arg
ACG
[ENA]
¡û
>W1710548707
FODZ01000003
Gammaproteobacteria
Luteibacter sp. UNC138MFCol5.1 [FODZ]
376619
376543
-
Arg
ACG
[ENA]
¡û
>W1710555208
FOJE01000001
Gammaproteobacteria
Luteibacter sp. 329MFSha [FOJE]
1679031
1678955
-
Arg
ACG
[ENA]
¡û
>W1710567364
FOSR01000015
Gammaproteobacteria
Rhodanobacter glycinis [FOSR]
75588
75512
-
Arg
ACG
[ENA]
¡û
>W1710579653
FPIS01000001
Gammaproteobacteria
Luteibacter sp. UNCMF366Tsu5.1 [FPIS]
1147676
1147600
-
Arg
ACG
[ENA]
¡û
>W1710603047
FUYT01000005
Gammaproteobacteria
Luteibacter sp. 22Crub2.1 [FUYT]
229227
229151
-
Arg
ACG
[ENA]
¡û
>W1710742140
LGRQ01000789
Gammaproteobacteria
Luteibacter rhizovicinus [LGRQ]
694
618
-
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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