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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.283585 (123 seq.)
>W1710860998
LMDI01000010
Betaproteobacteria
Rhizobacter sp. Root1221 [LMDI]
124385
124309
-
Met
CAT
[ENA]
¡û
>W1710944112
LOQE01000004
Betaproteobacteria
Tepidimonas taiwanensis [LOQE]
70752
70676
-
Met
CAT
[ENA]
¡û
>W1711259900
LYVQ01000014
Betaproteobacteria
Pelomonas sp. KK5 [LYVQ]
23813
23889
+
Met
CAT
[ENA]
¡û
>W1711268821
LZDH01000056
Betaproteobacteria
Tepidimonas fonticaldi [LZDH]
59059
58983
-
Met
CAT
[ENA]
¡û
>W1711394920
MESO01000024
Betaproteobacteria
Burkholderiales bacterium RIFOXYC12_FULL_65_23 [MESO]
1522
1446
-
Met
CAT
[ENA]
¡û
>W1712102922
NIOE01000013
Betaproteobacteria
Roseateles noduli HZ7 [NIOE]
245421
245345
-
Met
CAT
[ENA]
¡û
>W1712103023
NIOG01000003
Betaproteobacteria
Roseateles terrae [NIOG]
336113
336189
+
Met
CAT
[ENA]
¡û
>W131236686
AUMO01000017
Betaproteobacteria
Azohydromonas australica DSM 1124 [AUMO]
247206
247282
+
Met
CAT
[ENA]
¡û
>WENV180016270
FSUN01000076
[FSUN] metagenome; soil
8
84
+
Met
CAT
[ENA]
¢þ
>WENV180016520
FSVG01001630
[FSVG] metagenome; soil
18
94
+
Met
CAT
[ENA]
¢þ
>WENV180016531
FSVG01001877
[FSVG] metagenome; soil
12
88
+
Met
CAT
[ENA]
¢þ
>WENV180016717
FSVW01000085
[FSVW] metagenome; soil
22
98
+
Met
CAT
[ENA]
¢þ
>WENV180016797
FSVW01002296
[FSVW] metagenome; soil
1769
1845
+
Met
CAT
[ENA]
¢þ
>WENV180016854
FSVX01000585
[FSVX] metagenome; soil
3103
3027
-
Met
CAT
[ENA]
¢þ
>WENV180016867
FSVX01001301
[FSVX] metagenome; soil
18
94
+
Met
CAT
[ENA]
¢þ
>WENV180016921
FSWB01000285
[FSWB] metagenome; soil
23
99
+
Met
CAT
[ENA]
¢þ
>WENV180017180
FSWO01000004
[FSWO] metagenome; soil
3392
3316
-
Met
CAT
[ENA]
¢þ
>WENV180017786
FSXQ01002307
[FSXQ] metagenome; soil
2667
2743
+
Met
CAT
[ENA]
¢þ
>WENV180017854
FSXQ01004816
[FSXQ] metagenome; soil
75
1
-
Met
CAT
[ENA]
¢þ
>WENV180018531
FSZR01000431
[FSZR] metagenome; soil
17702
17626
-
Met
CAT
[ENA]
¢þ
>WENV180018569
FSZS01000118
[FSZS] metagenome; soil
15692
15616
-
Met
CAT
[ENA]
¢þ
>WENV180019387
FTBV01000797
[FTBV] metagenome; soil
4092
4016
-
Met
CAT
[ENA]
¢þ
>WENV180019392
FTBV01000899
[FTBV] metagenome; soil
8544
8468
-
Met
CAT
[ENA]
¢þ
>WENV180019395
FTBV01001024
[FTBV] metagenome; soil
7722
7646
-
Met
CAT
[ENA]
¢þ
>WENV180019424
FTBV01002123
[FTBV] metagenome; soil
3524
3600
+
Met
CAT
[ENA]
¢þ
>WENV180019721
FTCK01000261
[FTCK] metagenome; soil
3887
3811
-
Met
CAT
[ENA]
¢þ
>WENV180020947
FTDG01003317
[FTDG] metagenome; soil
29
105
+
Met
CAT
[ENA]
¢þ
>WENV180020963
FTDG01003712
[FTDG] metagenome; soil
1230
1306
+
Met
CAT
[ENA]
¢þ
>WENV180022994
FTHB01000402
[FTHB] metagenome; soil
41423
41347
-
Met
CAT
[ENA]
¢þ
>WENV180023892
FTIF01003478
[FTIF] metagenome; soil
7
83
+
Met
CAT
[ENA]
¢þ
>WENV180023986
FTIF01005701
[FTIF] metagenome; soil
7
83
+
Met
CAT
[ENA]
¢þ
>WENV180024046
FTIF01014702
[FTIF] metagenome; soil
169
245
+
Met
CAT
[ENA]
¢þ
>WENV180024060
FTIF01018963
[FTIF] metagenome; soil
14332
14256
-
Met
CAT
[ENA]
¢þ
>WENV180024190
FTIF01171278
[FTIF] metagenome; soil
469
545
+
Met
CAT
[ENA]
¢þ
>WENV180024873
FTIJ01324905
[FTIJ] metagenome; soil
77
1
-
Met
CAT
[ENA]
¢þ
>WENV180025229
FTIN01005482
[FTIN] metagenome; soil
2630
2554
-
Met
CAT
[ENA]
¢þ
>WENV180025236
FTIN01009889
[FTIN] metagenome; soil
978
902
-
Met
CAT
[ENA]
¢þ
>WENV180025245
FTIN01018043
[FTIN] metagenome; soil
840
916
+
Met
CAT
[ENA]
¢þ
>WENV180025359
FTIP01000254
[FTIP] metagenome; soil
32
108
+
Met
CAT
[ENA]
¢þ
>WENV180025388
FTIP01000964
[FTIP] metagenome; soil
3672
3596
-
Met
CAT
[ENA]
¢þ
>WENV180025390
FTIP01001045
[FTIP] metagenome; soil
69
145
+
Met
CAT
[ENA]
¢þ
>WENV180025397
FTIP01001381
[FTIP] metagenome; soil
1825
1749
-
Met
CAT
[ENA]
¢þ
>WENV180025398
FTIP01001381
[FTIP] metagenome; soil
1639
1563
-
Met
CAT
[ENA]
¢þ
>WENV180025457
FTIP01006697
[FTIP] metagenome; soil
1059
983
-
Met
CAT
[ENA]
¢þ
>WENV180025491
FTIP01021188
[FTIP] metagenome; soil
29
105
+
Met
CAT
[ENA]
¢þ
>WENV180025492
FTIP01021355
[FTIP] metagenome; soil
844
768
-
Met
CAT
[ENA]
¢þ
>WENV180025538
FTIP01045542
[FTIP] metagenome; soil
69
145
+
Met
CAT
[ENA]
¢þ
>WENV180025547
FTIP01048776
[FTIP] metagenome; soil
1017
941
-
Met
CAT
[ENA]
¢þ
>WENV180025584
FTIP01093892
[FTIP] metagenome; soil
18
94
+
Met
CAT
[ENA]
¢þ
>WENV180025587
FTIP01095226
[FTIP] metagenome; soil
21
97
+
Met
CAT
[ENA]
¢þ
>WENV180025625
FTIP01168516
[FTIP] metagenome; soil
7792
7716
-
Met
CAT
[ENA]
¢þ
>WENV180025810
FTIQ01160005
[FTIQ] metagenome; soil
13
89
+
Met
CAT
[ENA]
¢þ
>WENV180025914
FTIR01000099
[FTIR] metagenome; soil
525
601
+
Met
CAT
[ENA]
¢þ
>WENV180025960
FTIR01000918
[FTIR] metagenome; soil
180
256
+
Met
CAT
[ENA]
¢þ
>WENV180026029
FTIR01002793
[FTIR] metagenome; soil
174
250
+
Met
CAT
[ENA]
¢þ
>WENV180027823
FTIZ01122789
[FTIZ] metagenome; soil
9
85
+
Met
CAT
[ENA]
¢þ
>WENV180029261
FTJI01301149
[FTJI] metagenome; soil
129
205
+
Met
CAT
[ENA]
¢þ
>WENV180030588
FTJN01000580
[FTJN] metagenome; soil
12922
12846
-
Met
CAT
[ENA]
¢þ
>WENV180032559
FTKB01214086
[FTKB] metagenome; soil
171
95
-
Met
CAT
[ENA]
¢þ
>WENV180032716
FTKD01000071
[FTKD] metagenome; soil
205
281
+
Met
CAT
[ENA]
¢þ
>WENV180032782
FTKD01000836
[FTKD] metagenome; soil
18922
18846
-
Met
CAT
[ENA]
¢þ
>WENV180032923
FTKD01004889
[FTKD] metagenome; soil
2591
2667
+
Met
CAT
[ENA]
¢þ
>WENV180034783
FTKR01309239
[FTKR] metagenome; soil
129
205
+
Met
CAT
[ENA]
¢þ
>WENV180035104
FTKT01001875
[FTKT] metagenome; soil
5871
5795
-
Met
CAT
[ENA]
¢þ
>WENV180035128
FTKT01002483
[FTKT] metagenome; soil
8704
8628
-
Met
CAT
[ENA]
¢þ
>WENV180035150
FTKT01002925
[FTKT] metagenome; soil
180
256
+
Met
CAT
[ENA]
¢þ
>WENV180035248
FTKT01034374
[FTKT] metagenome; soil
18648
18572
-
Met
CAT
[ENA]
¢þ
>WENV180035251
FTKT01035302
[FTKT] metagenome; soil
519
595
+
Met
CAT
[ENA]
¢þ
>WENV180285485
OBID01454343
[OBID] metagenome; sludge
61
137
+
Met
CAT
[ENA]
¢þ
>WENV180558399
OCJY01050972
[OCJY] human gut metagenome; human gut
182
258
+
Met
CAT
[ENA]
¢þ
>WENV181373446
OFQX01065006
[OFQX] wastewater metagenome; WWTP Novara (Effluent)
315
239
-
Met
CAT
[ENA]
¢þ
>WENV181411746
OGCI01042975
[OGCI] hot springs metagenome; Hot spring water
974
1050
+
Met
CAT
[ENA]
¢þ
>WENV181415303
OGCL01007551
[OGCL] hot springs metagenome; Hot spring water
1164
1240
+
Met
CAT
[ENA]
¢þ
>W141234417
BAWN01000021
Betaproteobacteria
Serpentinimonas barnesii H1 [BAWN]
45241
45317
+
Met
CAT
[ENA]
¡û
>C08005965
CP001013
Betaproteobacteria
Leptothrix cholodnii SP-6 [CP001013]
634137
634064
-
Met
CAT
[Ensembl]
¡û
>WENV183697147
OUNJ010018946
[OUNJ] metagenome; soil
116
192
+
Met
CAT
[ENA]
¢þ
>WENV183726500
PJQF01229521
[PJQF] biofilm metagenome; biomolecule (vanillin) treated reverse osmosis membrane biofilm
95
19
-
Met
CAT
[ENA]
¢þ
>WENV170012288
APMI01147007
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
766
690
-
Met
CAT
[ENA]
¢þ
>WENV170018690
BBPD01000373
[BBPD] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
6225
6301
+
Met
CAT
[ENA]
¢þ
>WENV170018984
BBPD01002843
[BBPD] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
787
711
-
Met
CAT
[ENA]
¢þ
>WENV170019874
BBPE01001123
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
12186
12110
-
Met
CAT
[ENA]
¢þ
>WENV170019901
BBPE01001298
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
423
499
+
Met
CAT
[ENA]
¢þ
>WENV170019902
BBPE01001299
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
425
501
+
Met
CAT
[ENA]
¢þ
>WENV170554726
CXWK01087316
[CXWK] wastewater metagenome; activated sludge
320
396
+
Met
CAT
[ENA]
¢þ
>WENV170714205
LNFM01060518
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
1021
945
-
Met
CAT
[ENA]
¢þ
>WENV170770485
LXNH01107211
[LXNH] seawater metagenome; marine seawater
125
49
-
Met
CAT
[ENA]
¢þ
>C181064537
CP022423
Betaproteobacteria
Vitreoscilla filiformis ATCC 15551 [CP022423]
3288825
3288901
+
Met
CAT
-
¡û
>C181176231
CP029210
Betaproteobacteria
Aquabacterium olei NBRC 110486 [CP029210]
696378
696302
-
Met
CAT
-
¡û
>C191182066
CP040709
Betaproteobacteria
Inhella inkyongensis IMCC1713 [CP040709]
3161403
3161479
+
Met
CAT
-
¡û
>W1910699945
MESA01000039
Betaproteobacteria
Burkholderiales bacterium RIFCSPHIGHO2_12_FULL_63_20 [MESA]
539
463
-
Met
CAT
[ENA]
¡û
>W1910700322
MESK01000023
Betaproteobacteria
Burkholderiales bacterium RIFCSPLOWO2_12_FULL_64_99 [MESK]
541
465
-
Met
CAT
[ENA]
¡û
>W1911647472
QAJN01000002
Betaproteobacteria
Paucibacter sp. KBW04 [QAJN]
253526
253602
+
Met
CAT
[ENA]
¡û
>W1911774989
QXMG01000001
Betaproteobacteria
Caldimonas tepidiphila YIM 730274 [QXMG]
280916
280992
+
Met
CAT
[ENA]
¡û
>W1810081331
PEOG01000005
Betaproteobacteria
Roseateles chitinivorans HWN-4 [PEOG]
5985
5909
-
Met
CAT
[ENA]
¡û
>W1810222835
POSP01000003
Betaproteobacteria
Paucibacter aquatile CR182 [POSP]
1701021
1701097
+
Met
CAT
[ENA]
¡û
>SRA1004033
SRR002328.105765
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
105
29
-
Met
CAT
[SRA]
>SRA1004158
SRR002328.176774
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
145
221
+
Met
CAT
[SRA]
>W1810355016
PVLQ01000087
Betaproteobacteria
Malikia granosa P1 [PVLQ]
7439
7515
+
Met
CAT
[ENA]
¡û
>W1810355082
PVLR01000058
Betaproteobacteria
Malikia spinosa 83 [PVLR]
545
469
-
Met
CAT
[ENA]
¡û
>W1810475775
QAJF01001397
Betaproteobacteria
Pelomonas sp. HMWF004 [QAJF]
3074
2998
-
Met
CAT
[ENA]
¡û
>W1810884623
QUMT01000001
Betaproteobacteria
Roseateles depolymerans DSM 11813 [QUMT]
322356
322280
-
Met
CAT
[ENA]
¡û
>C151002093
AP014568
Betaproteobacteria
Serpentinimonas raichei A1 [AP014568]
2023059
2023135
+
Met
CAT
[Ensembl]
¡û
>C151002161
AP014569
Betaproteobacteria
Serpentinimonas maccroryi B1 [AP014569]
220969
220893
-
Met
CAT
[Ensembl]
¡û
>ENV09001510
ABSR01021136
Freshwater sediment metagenome lwMethylamine_C1
306
382
+
Met
CAT
[ENA]
¡û
>W1511348491
JRKM01000001
Betaproteobacteria
Aquabacterium sp. NJ1 [JRKM]
1616368
1616444
+
Met
CAT
[ENA]
¡û
>W1511403222
JTKY01000024
Betaproteobacteria
Tepidimonas taiwanensis VT154-175 [JTKY]
9462
9386
-
Met
CAT
[ENA]
¡û
>W1511429885
JUEA01000128
Betaproteobacteria
Comamonadaceae bacterium BICA1-1 [JUEA]
33756
33680
-
Met
CAT
[ENA]
¡û
>W1511432373
JUGM01000001
Betaproteobacteria
Methylibium sp. CF059 [JUGM]
54503
54427
-
Met
CAT
[ENA]
¡û
>W1511552088
JZUE01000001
Betaproteobacteria
Aquincola tertiaricarbonis MIMtkpLc11 [JZUE]
500936
500860
-
Met
CAT
[ENA]
¡û
>W11187698
CAFG01000526
Betaproteobacteria
Mitsuaria sp. H24L5A [CAFG]
1113
1189
+
Met
CAT
[ENA]
¡û
>C161059548
CP013692
Betaproteobacteria
Paucibacter sp. KCTC 42545 [CP013692]
3314318
3314394
+
Met
CAT
[Ensembl]
¡û
>C161060295
CP013729
Betaproteobacteria
Roseateles depolymerans KCTC 42856 [CP013729]
4845436
4845512
+
Met
CAT
[Ensembl]
¡û
>W121036364
AHLZ01000003
Betaproteobacteria
Burkholderiales bacterium JOSHI_001 [AHLZ]
415614
415690
+
Met
CAT
[ENA]
¡û
>W121127059
CAFG01000526
Betaproteobacteria
Mitsuaria sp. H24L5A [CAFG]
1113
1189
+
Met
CAT
[ENA]
¡û
>W1610076249
BCYP01000018
Betaproteobacteria
Roseateles chitosanitabidus NBRC 102408 [BCYP]
349076
349000
-
Met
CAT
[ENA]
¡û
>W1610604909
LFRI01000386
Betaproteobacteria
Aquabacterium parvum [LFRI]
376070
375994
-
Met
CAT
[ENA]
¡û
>W1610723344
LMDI01000010
Betaproteobacteria
Rhizobacter sp. Root1221 [LMDI]
124385
124309
-
Met
CAT
[ENA]
¡û
>W1610800412
LOQE01000004
Betaproteobacteria
Tepidimonas taiwanensis [LOQE]
70752
70676
-
Met
CAT
[ENA]
¡û
>W1611029633
LZDH01000056
Betaproteobacteria
Tepidimonas fonticaldi [LZDH]
59059
58983
-
Met
CAT
[ENA]
¡û
>W1710074064
BCYP01000018
Betaproteobacteria
Roseateles chitosanitabidus NBRC 102408 [BCYP]
349076
349000
-
Met
CAT
[ENA]
¡û
>W1710544457
FOAV01000002
Betaproteobacteria
Roseateles sp. YR242 [FOAV]
425597
425673
+
Met
CAT
[ENA]
¡û
>W1710575446
FOZE01000002
Betaproteobacteria
Mitsuaria sp. PDC51 [FOZE]
586906
586982
+
Met
CAT
[ENA]
¡û
>W1710726352
LFRI01000386
Betaproteobacteria
Aquabacterium parvum [LFRI]
376070
375994
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK