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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.283594 (18 seq.)
>W131230495
AUHR01000001
Betaproteobacteria
Laribacter hongkongensis DSM 14985 [AUHR]
262689
262764
+
Lys
CTT
[ENA]
¡û
>W131230496
AUHR01000001
Betaproteobacteria
Laribacter hongkongensis DSM 14985 [AUHR]
262801
262876
+
Lys
CTT
[ENA]
¡û
>W1711583897
MNXU01000056
Betaproteobacteria
Betaproteobacteria bacterium CG2_30_68_42 [MNXU]
50558
50633
+
Lys
CTT
[ENA]
¡û
>WENV180731730
ODGW01008751
[ODGW] human metagenome; G_DNA_Supragingival plaque
280
355
+
Lys
CTT
[ENA]
¢þ
>WENV180835282
ODKE01001775
[ODKE] human metagenome; G_DNA_Supragingival plaque
8245
8320
+
Lys
CTT
[ENA]
¢þ
>WENV180938562
ODTX01003388
[ODTX] human metagenome; G_DNA_Supragingival plaque
383
308
-
Lys
CTT
[ENA]
¢þ
>WENV180981929
ODVE01087710
[ODVE] human metagenome; G_DNA_Supragingival plaque
353
278
-
Lys
CTT
[ENA]
¢þ
>WENV180984243
ODVF01202279
[ODVF] human metagenome; G_DNA_Supragingival plaque
124
49
-
Lys
CTT
[ENA]
¢þ
>WENV181049475
ODYD01000310
[ODYD] human metagenome; G_DNA_Supragingival plaque
9559
9484
-
Lys
CTT
[ENA]
¢þ
>WENV181070212
OEAE01000463
[OEAE] human metagenome; G_DNA_Supragingival plaque
21675
21750
+
Lys
CTT
[ENA]
¢þ
>W141241342
CAHF01000013
Betaproteobacteria
Noviherbaspirillum massiliense JC206 [CAHF]
29101
29173
+
Lys
CTT
[ENA]
¡û
>WENV170648202
JRHI01000036
[JRHI] sediment metagenome; sediment from deep within a dark volcanic ice cave with no known source of introduced
24841
24766
-
Lys
CTT
[ENA]
¢þ
>C181058441
CP022115
Betaproteobacteria
Laribacter hongkongensis HLGZ1 [CP022115]
3298026
3298101
+
Lys
CTT
-
¡û
>C181058442
CP022115
Betaproteobacteria
Laribacter hongkongensis HLGZ1 [CP022115]
3298138
3298213
+
Lys
CTT
-
¡û
>C09107038
CP001154
Betaproteobacteria
Laribacter hongkongensis HLHK9 [CP001154]
3091553
3091628
+
Lys
CTT
[Ensembl]
¡û
>C09107039
CP001154
Betaproteobacteria
Laribacter hongkongensis HLHK9 [CP001154]
3091665
3091740
+
Lys
CTT
[Ensembl]
¡û
>W1911502796
OEQA01000007
Betaproteobacteria
Ottowia massiliensis Marseille-P4747 [OEQA]
217573
217498
-
Lys
CTT
[ENA]
¡û
>C151090589
CP012073
Betaproteobacteria
Ottowia sp. oral taxon 894 W10237 [CP012073]
372633
372708
+
Lys
CTT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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