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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.283601 (110 seq.)
>W1711334264
MBQE01000006
Alphaproteobacteria
Stappia indica [MBQE]
244646
244721
+
Thr
CGT
[ENA]
¡û
>W1711334298
MBQF01000004
Alphaproteobacteria
Stappia indica [MBQF]
174471
174546
+
Thr
CGT
[ENA]
¡û
>W1711388548
MEHS01000004
Alphaproteobacteria
Rhodobaca barguzinensis [MEHS]
2106218
2106143
-
Thr
CGT
[ENA]
¡û
>W1711388576
MEHT01000017
Alphaproteobacteria
Roseinatronobacter thiooxidans [MEHT]
137011
137086
+
Thr
CGT
[ENA]
¡û
>W1711475549
MJUX01000001
Alphaproteobacteria
Acuticoccus yangtzensis [MJUX]
739661
739586
-
Thr
CGT
[ENA]
¡û
>W131155839
AQOX01000002
Alphaproteobacteria
Limimaricola hongkongensis DSM 17492 [AQOX]
223337
223412
+
Thr
CGT
[ENA]
¡û
>W131180869
ARNL01000046
Alphaproteobacteria
Yoonia vestfoldensis DSM 16212 [ARNL]
34565
34490
-
Thr
CGT
[ENA]
¡û
>C171064546
CP017622
Alphaproteobacteria
Ketogulonicigenium vulgare SPU B805 [CP017622]
2843635
2843560
-
Thr
CGT
-
¡û
>C171092034
CP019307
Alphaproteobacteria
Phaeobacter inhibens DOK1-1 [CP019307]
2358540
2358615
+
Thr
CGT
-
¡û
>C171101155
CP019937
Alphaproteobacteria
Ketogulonicigenium robustum SPU_B003 [CP019937]
2266378
2266303
-
Thr
CGT
-
¡û
>C011081
CP000264
Alphaproteobacteria
Jannaschia sp. CCS1 [CP000264]
4190344
4190419
+
Thr
CGT
[Ensembl]
¡û
>w023647
AAYA01000016
Alphaproteobacteria
Sagittula stellata E-37 [AAYA]
7808
7885
+
Thr
CGT
[ENA]
¡û
>WENV180209699
OBAL01014202
[OBAL] marine metagenome; ENVO:00002019, 'BRACKISH WATER
283
358
+
Thr
CGT
[ENA]
¢þ
>WENV180285170
OBID01258188
[OBID] metagenome; sludge
79
154
+
Thr
CGT
[ENA]
¢þ
>WENV180357438
OBNN01009649
[OBNN] marine metagenome; Coastal water
620
695
+
Thr
CGT
[ENA]
¢þ
>WENV180637524
OCRG01038332
[OCRG] marine metagenome; seawater
100
175
+
Thr
CGT
[ENA]
¢þ
>WENV181122594
OEFM01061529
[OEFM] marine metagenome; ENVO:00000569 for seawater
26
101
+
Thr
CGT
[ENA]
¢þ
>WENV181126376
OEFV01060261
[OEFV] marine metagenome; Particulate matter on a 0.22 Um pore size filter
169
94
-
Thr
CGT
[ENA]
¢þ
>WENV181234451
OFEU01000148
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
4811
4736
-
Thr
CGT
[ENA]
¢þ
>WENV181234677
OFEU01001250
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
1805
1880
+
Thr
CGT
[ENA]
¢þ
>WENV181414041
OGCK01204315
[OGCK] hot springs metagenome; hot spring sediment
348
273
-
Thr
CGT
[ENA]
¢þ
>W141142892
AWRV01000070
Alphaproteobacteria
Rhodobacteraceae bacterium PD-2 [AWRV]
7195
7270
+
Thr
CGT
[ENA]
¡û
>W141151454
AXBB01000002
Alphaproteobacteria
Phaeobacter inhibens DSM 16374 [AXBB]
110488
110413
-
Thr
CGT
[ENA]
¡û
>W141152921
AXCE01000004
Alphaproteobacteria
Labrenzia sp. C1B70 [AXCE]
635699
635774
+
Thr
CGT
[ENA]
¡û
>WENV182592893
OJIS01000608
[OJIS] seawater metagenome; Sea water
2352
2427
+
Thr
CGT
[ENA]
¢þ
>W141260974
CCAO010000082
Alphaproteobacteria
Devosia sp. DBB001 DDB001 [CCAO]
22706
22631
-
Thr
CGT
[ENA]
¡û
>WENV182951540
OKVU01001410
[OKVU] human gut metagenome; human gut
724
649
-
Thr
CGT
[ENA]
¢þ
>WENV182953520
OKVY01003771
[OKVY] human gut metagenome; human gut
328
403
+
Thr
CGT
[ENA]
¢þ
>WENV170014712
AYSL01006174
[AYSL] marine sediment metagenome; marine sediment samples in the proximity of a phosphate-oil terminal
1117
1042
-
Thr
CGT
[ENA]
¢þ
>WENV170016484
AZIK01009007
[AZIK] marine sediment metagenome; enrichment culture of sample MGS-ANC(AMM) from oil contaminated site at the Ancona Port
422
497
+
Thr
CGT
[ENA]
¢þ
>WENV170229013
CEQG01064086
[CEQG] marine metagenome genome assembly TARA_076_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
616
691
+
Thr
CGT
[ENA]
¢þ
>WENV170266180
CERE01047138
[CERE] marine metagenome genome assembly TARA_070_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
605
680
+
Thr
CGT
[ENA]
¢þ
>WENV170674343
LAZR01058697
[LAZR] marine sediment metagenome; Loki non-amplified sample from Loki's castle hydrothermal vent sediment
29
104
+
Thr
CGT
[ENA]
¢þ
>WENV170710352
LNFM01001585
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
85486
85561
+
Thr
CGT
[ENA]
¢þ
>WENV170711309
LNFM01004489
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
18194
18119
-
Thr
CGT
[ENA]
¢þ
>WENV170802077
MDSW01007076
[MDSW] marine metagenome; seawater
2173
2248
+
Thr
CGT
[ENA]
¢þ
>WENV170941868
MDTG01367858
[MDTG] marine metagenome; seawater
2940
2865
-
Thr
CGT
[ENA]
¢þ
>WENV170963587
MRWG01000327
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
55636
55711
+
Thr
CGT
[ENA]
¢þ
>WENV170964846
MRWG01057732
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
51
126
+
Thr
CGT
[ENA]
¢þ
>WENV170974770
MTKY01073692
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
2380
2455
+
Thr
CGT
[ENA]
¢þ
>C181008655
CP010617
Alphaproteobacteria
Phaeobacter inhibens P30 [CP010617]
3602141
3602216
+
Thr
CGT
-
¡û
>C181008831
CP010636
Alphaproteobacteria
Phaeobacter gallaeciensis P73 [CP010636]
3678719
3678794
+
Thr
CGT
-
¡û
>C181009113
CP010668
Alphaproteobacteria
Phaeobacter inhibens P57 [CP010668]
3552266
3552341
+
Thr
CGT
-
¡û
>C181009285
CP010689
Alphaproteobacteria
Phaeobacter piscinae P42 [CP010689]
3515811
3515886
+
Thr
CGT
-
¡û
>C181009742
CP010749
Alphaproteobacteria
Phaeobacter inhibens P70 [CP010749]
3654555
3654630
+
Thr
CGT
-
¡û
>C181009857
CP010767
Alphaproteobacteria
Phaeobacter piscinae P13 [CP010767]
3512704
3512779
+
Thr
CGT
-
¡û
>C181048989
CP021040
Alphaproteobacteria
Phaeobacter gallaeciensis P129 [CP021040]
3610045
3610120
+
Thr
CGT
-
¡û
>C181049362
CP021114
Alphaproteobacteria
Aestuarium zhoushanense G7 [CP021114]
2804520
2804595
+
Thr
CGT
-
¡û
>W09102723
AAIG01000001
Alphaproteobacteria
Jannaschia sp. CCS1 [AAIG]
375066
375141
+
Thr
CGT
[ENA]
¡û
>C181108006
CP024899
Alphaproteobacteria
Rhodobaca barguzinensis alga05 [CP024899]
2548917
2548842
-
Thr
CGT
-
¡û
>C181139151
CP026747
Alphaproteobacteria
Devosia sp. I507 [CP026747]
1909593
1909518
-
Thr
CGT
-
¡û
>W141531728
JHEH01000031
Alphaproteobacteria
Thioclava dalianensis [JHEH]
16562
16637
+
Thr
CGT
[ENA]
¡û
>C191184390
CP040932
Alphaproteobacteria
Oceanicola sp. D3 [CP040932]
336214
336289
+
Thr
CGT
-
¡û
>W141814332
JQGB01000067
Alphaproteobacteria
Devosia sp. 17-2-E-8 [JQGB]
11051
11126
+
Thr
CGT
[ENA]
¡û
>W1910442638
FWFJ01000042
Alphaproteobacteria
Roseovarius gaetbuli CECT 8370 [FWFJ]
33855
33930
+
Thr
CGT
[ENA]
¡û
>W1910442715
FWFL01000005
Alphaproteobacteria
Roseovarius litorisediminis CECT 8287 [FWFL]
125826
125901
+
Thr
CGT
[ENA]
¡û
>W1910501808
FYAU01000024
Alphaproteobacteria
Stappia sp. TSB10P1A [FYAU]
128672
128747
+
Thr
CGT
[ENA]
¡û
>W1910501876
FYAV01000071
Alphaproteobacteria
Stappia sp. TSB10GB4 [FYAV]
33429
33504
+
Thr
CGT
[ENA]
¡û
>W1910501917
FYAW01000022
Alphaproteobacteria
Stappia sp. P2PMeth1 [FYAW]
403852
403777
-
Thr
CGT
[ENA]
¡û
>W1910547049
FZNM01000001
Alphaproteobacteria
Paracoccus sediminis DSM 26170 [FZNM]
129539
129614
+
Thr
CGT
[ENA]
¡û
>W1910549368
FZPF01000008
Alphaproteobacteria
Jannaschia aquimarina DSM 28248 [FZPF]
88697
88622
-
Thr
CGT
[ENA]
¡û
>W1910584267
JXTF01000145
Alphaproteobacteria
Roseovarius sp. JS7-11 [JXTF]
32752
32677
-
Thr
CGT
[ENA]
¡û
>W1911237154
NSBT01000018
Alphaproteobacteria
Actibacterium ureilyticum LS-811 [NSBT]
233290
233215
-
Thr
CGT
[ENA]
¡û
>W1911494870
OBML01000003
Alphaproteobacteria
Stappia indica USBA 352 [OBML]
182933
183008
+
Thr
CGT
[ENA]
¡û
>W1911538469
OMOJ01000007
Alphaproteobacteria
Pseudoprimorskyibacter insulae CECT 8871 [OMOJ]
33935
33860
-
Thr
CGT
[ENA]
¡û
>W1911581859
PGOI01000007
Alphaproteobacteria
Pseudorhodobacter sp. MZDSW-24AT [PGOI]
561946
561871
-
Thr
CGT
[ENA]
¡û
>W1810101668
PGTB01000135
Alphaproteobacteria
Pseudooceanicola lipolyticus 157 [PGTB]
1789
1864
+
Thr
CGT
[ENA]
¡û
>W1810400361
PYGB01000001
Alphaproteobacteria
Limimaricola soesokkakensis DSM 29956 [PYGB]
226157
226232
+
Thr
CGT
[ENA]
¡û
>W1810444931
PZKE01000001
Alphaproteobacteria
Fuscovulum blasticum DSM 2131 [PZKE]
335770
335695
-
Thr
CGT
[ENA]
¡û
>W1810489536
QBBW01000001
Alphaproteobacteria
Acuticoccus yangtzensis JL1095 [QBBW]
742850
742775
-
Thr
CGT
[ENA]
¡û
>W1810570013
QEHM01000003
Alphaproteobacteria
Albibacillus kandeliae J95 [QEHM]
414317
414392
+
Thr
CGT
[ENA]
¡û
>W1810580447
QETF01000007
Alphaproteobacteria
Salibaculum griseiflavum WDS4C29 [QETF]
118066
118141
+
Thr
CGT
[ENA]
¡û
>W1810596851
QGGV01000004
Alphaproteobacteria
Silicimonas algicola DSM 103371 [QGGV]
229493
229568
+
Thr
CGT
[ENA]
¡û
>W1810596880
QGGW01000002
Alphaproteobacteria
Roseicyclus mahoneyensis DSM 16097 [QGGW]
99166
99241
+
Thr
CGT
[ENA]
¡û
>W1810603233
QGKU01000032
Alphaproteobacteria
Meridianimarinicoccus roseus TG-679 [QGKU]
81445
81520
+
Thr
CGT
[ENA]
¡û
>W1810624934
QHHQ01000002
Alphaproteobacteria
Acuticoccus sediminis PTG4-2 [QHHQ]
138314
138239
-
Thr
CGT
[ENA]
¡û
>W1810685914
QKZQ01000007
Alphaproteobacteria
Roseinatronobacter thiooxidans DSM 13087 [QKZQ]
137607
137682
+
Thr
CGT
[ENA]
¡û
>W1810762297
QPMK01000019
Alphaproteobacteria
Thalassococcus profundi WRAS1 [QPMK]
42039
41964
-
Thr
CGT
[ENA]
¡û
>SRA1014951
SRR023845.395323
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
163
238
+
Thr
CGT
[SRA]
>W1510000316
AQQZ01000004
Alphaproteobacteria
Pseudaestuariivita atlantica 22II-S11-z3 [AQQZ]
237764
237839
+
Thr
CGT
[ENA]
¡û
>C11117243
CP002568
Alphaproteobacteria
Polymorphum gilvum SL003B-26A1 [CP002568]
377217
377292
+
Thr
CGT
[Ensembl]
¡û
>W1511325006
JQFU01000001
Alphaproteobacteria
Rhodovulum sp. NI22 [JQFU]
255466
255541
+
Thr
CGT
[ENA]
¡û
>W1511482988
JWLL01000003
Alphaproteobacteria
Tateyamaria sp. ANG-S1 [JWLL]
347709
347784
+
Thr
CGT
[ENA]
¡û
>W1511483065
JWLM01000014
Alphaproteobacteria
Leisingera sp. ANG-S [JWLM]
170468
170543
+
Thr
CGT
[ENA]
¡û
>W11143055
AEPN01000031
Alphaproteobacteria
Paracoccus sp. TRP [AEPN]
12273
12348
+
Thr
CGT
[ENA]
¡û
>W1511564673
LADY01000004
Alphaproteobacteria
Roseovarius sp. BRH_c41 [LADY]
53480
53405
-
Thr
CGT
[ENA]
¡û
>W11157620
AFCF01000025
Alphaproteobacteria
Leisingera sp. ANG1 ANG1 [AFCF]
170443
170518
+
Thr
CGT
[ENA]
¡û
>C121003846
CP002976
Alphaproteobacteria
Phaeobacter inhibens DSM 17395 [CP002976]
3724592
3724667
+
Thr
CGT
-
¡û
>C161029351
CP010869
Alphaproteobacteria
Actibacterium sp. EMB200-NS6 [CP010869]
105
30
-
Thr
CGT
[Ensembl]
¡û
>W1610092014
CXST01000003
Alphaproteobacteria
Roseibium aggregatum aggregata [CXST]
98662
98587
-
Thr
CGT
[ENA]
¡û
>W1610092707
CYSA01000015
Alphaproteobacteria
Thalassovita gelatinovora gelatinovorus [CYSA]
746428
746503
+
Thr
CGT
[ENA]
¡û
>W1610597324
LFEO01000022
Alphaproteobacteria
Alphaproteobacteria bacterium casp-alpha3 [LFEO]
16797
16722
-
Thr
CGT
[ENA]
¡û
>W1611066231
MBQE01000006
Alphaproteobacteria
Stappia indica [MBQE]
244646
244721
+
Thr
CGT
[ENA]
¡û
>W1611066265
MBQF01000004
Alphaproteobacteria
Stappia indica [MBQF]
174471
174546
+
Thr
CGT
[ENA]
¡û
>W1710015359
AQQP01000009
Alphaproteobacteria
Phaeobacter sp. 22II1-1F12B [AQQP]
240251
240176
-
Thr
CGT
[ENA]
¡û
>W1710015566
AQQU01000001
Alphaproteobacteria
Oceanicola sp. 22II-s10i [AQQU]
705251
705176
-
Thr
CGT
[ENA]
¡û
>W1710015711
AQRB01000002
Alphaproteobacteria
Stappia sp. 22II-S9-Z10 [AQRB]
103222
103147
-
Thr
CGT
[ENA]
¡û
>W1710095371
CXST01000003
Alphaproteobacteria
Roseibium aggregatum aggregata [CXST]
98662
98587
-
Thr
CGT
[ENA]
¡û
>W1710095962
CYSA01000015
Alphaproteobacteria
Thalassovita gelatinovora gelatinovorus [CYSA]
746428
746503
+
Thr
CGT
[ENA]
¡û
>W1710508104
FMVT01000010
Alphaproteobacteria
Paracoccus tibetensis [FMVT]
50828
50753
-
Thr
CGT
[ENA]
¡û
>W1710516243
FNCL01000007
Alphaproteobacteria
Alloyangia pacifica [FNCL]
134552
134627
+
Thr
CGT
[ENA]
¡û
>W1710548381
FODS01000021
Alphaproteobacteria
Salinihabitans flavidus [FODS]
47326
47251
-
Thr
CGT
[ENA]
¡û
>W1710555057
FOJB01000001
Alphaproteobacteria
Aliiroseovarius sediminilitoris [FOJB]
351732
351807
+
Thr
CGT
[ENA]
¡û
>W1710558476
FOLX01000001
Alphaproteobacteria
Pseudooceanicola nitratireducens [FOLX]
121533
121458
-
Thr
CGT
[ENA]
¡û
>W1710579509
FPCK01000003
Alphaproteobacteria
Devosia crocina [FPCK]
353027
352952
-
Thr
CGT
[ENA]
¡û
>W1710587510
FQYO01000004
Alphaproteobacteria
Wenxinia saemankumensis [FQYO]
423563
423638
+
Thr
CGT
[ENA]
¡û
>W1710588014
FQZA01000002
Alphaproteobacteria
Palleronia salina salinus [FQZA]
241727
241802
+
Thr
CGT
[ENA]
¡û
>W1710594772
FSRL01000001
Alphaproteobacteria
Vannielia litorea litoreus [FSRL]
3520737
3520812
+
Thr
CGT
[ENA]
¡û
>W1710616718
JFKD01000001
Alphaproteobacteria
Marivita cryptomonadis [JFKD]
173168
173243
+
Thr
CGT
[ENA]
¡û
>W1710718648
LFEO01000022
Alphaproteobacteria
Alphaproteobacteria bacterium casp-alpha3 [LFEO]
16797
16722
-
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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