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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.283646 (63 seq.)
>W1710860536
LMCY01000032
Betaproteobacteria
Massilia sp. Root335 [LMCY]
7163
7238
+
Thr
TGT
[ENA]
¡û
>W1710876434
LMPF01000005
Betaproteobacteria
Burkholderia sp. Leaf177 [LMPF]
112898
112973
+
Thr
TGT
[ENA]
¡û
>W1710955092
LOXQ01000029
Betaproteobacteria
Burkholderia sp. MSMB2040 [LOXQ]
6514
6439
-
Thr
TGT
[ENA]
¡û
>W1710974554
LPKI01000050
Betaproteobacteria
Burkholderia sp. MSMB617WGS [LPKI]
7077
7002
-
Thr
TGT
[ENA]
¡û
>W1710995394
LQAD01000002
Betaproteobacteria
Cupriavidus metallidurans [LQAD]
89669
89594
-
Thr
TGT
[ENA]
¡û
>W1711148771
LVKU01000006
Betaproteobacteria
Ralstonia solanacearum [LVKU]
53461
53386
-
Thr
TGT
[ENA]
¡û
>W1711148864
LVKV01000124
Betaproteobacteria
Ralstonia solanacearum [LVKV]
53468
53393
-
Thr
TGT
[ENA]
¡û
>W1711167629
LVWN01000041
Betaproteobacteria
Cupriavidus necator [LVWN]
84658
84733
+
Thr
TGT
[ENA]
¡û
>W1711602812
MOLJ01000007
Betaproteobacteria
Ralstonia solanacearum [MOLJ]
54747
54822
+
Thr
TGT
[ENA]
¡û
>W131158972
AQUR01000083
Betaproteobacteria
Cupriavidus neocaledonicus STM 6070 [AQUR]
85836
85911
+
Thr
TGT
[ENA]
¡û
>W131194453
ASQR01000072
Betaproteobacteria
Ralstonia solanacearum SD54 [ASQR]
76942
76867
-
Thr
TGT
[ENA]
¡û
>W131227480
AUFE01000022
Betaproteobacteria
Cupriavidus sp. amp6 [AUFE]
85152
85227
+
Thr
TGT
[ENA]
¡û
>W131237334
AUOA01000027
Betaproteobacteria
Oxalobacteraceae bacterium JGI 0001002-H16 [AUOA]
758
833
+
Thr
TGT
[ENA]
¡û
>W1711706632
MSRG01000035
Betaproteobacteria
Caballeronia sordidicola [MSRG]
41976
42051
+
Thr
TGT
[ENA]
¡û
>W1711957346
NBTY01000133
Betaproteobacteria
Caballeronia sordidicola [NBTY]
787
712
-
Thr
TGT
[ENA]
¡û
>W1711957406
NBTZ01000141
Betaproteobacteria
Caballeronia sordidicola [NBTZ]
41976
42051
+
Thr
TGT
[ENA]
¡û
>C171119239
CP021448
Betaproteobacteria
Ralstonia solanacearum SEPPX05 [CP021448]
364198
364123
-
Thr
TGT
-
¡û
>C018523
CP000090
Betaproteobacteria
Cupriavidus pinatubonensis [CP000090]
3401285
3401210
-
Thr
TGT
[Ensembl]
¡û
>WENV180309157
OBJR01605733
[OBJR] soil metagenome; soil
119
44
-
Thr
TGT
[ENA]
¢þ
>WENV170593479
FUFK010889716
[FUFK] metagenome; unknown
578
503
-
Thr
TGT
[ENA]
¢þ
>WENV170965693
MTEV01000331
[MTEV] soil metagenome; soil bioaugmentation with soil previously exposed to atrazine
1424
1349
-
Thr
TGT
[ENA]
¢þ
>C181124790
CP025985
Betaproteobacteria
Ralstonia solanacearum RSCM [CP025985]
609453
609528
+
Thr
TGT
-
¡û
>C191021633
CP022770
Betaproteobacteria
Ralstonia solanacearum T51 [CP022770]
471783
471858
+
Thr
TGT
-
¡û
>C191117073
CP033969
Betaproteobacteria
Cupriavidus pauculus FDAARGOS_614 [CP033969, CP033970]
1177242
1177317
+
Thr
TGT
-
¡û
>W141727687
JNFG01000049
Betaproteobacteria
Caballeronia sordidicola [JNFG]
43945
44020
+
Thr
TGT
[ENA]
¡û
>W141811329
JPXI01000042
Betaproteobacteria
Massilia sp. BSC265 consociata [JPXI]
27759
27834
+
Thr
TGT
[ENA]
¡û
>W1910804570
MTHB01000288
Betaproteobacteria
Caballeronia sordidicola PAMC 26633 [MTHB]
1263
1188
-
Thr
TGT
[ENA]
¡û
>W1910870536
NCTJ01000002
Betaproteobacteria
Ralstonia solanacearum UW700 [NCTJ]
33713
33638
-
Thr
TGT
[ENA]
¡û
>W1911498123
OCSX01000001
Betaproteobacteria
Burkholderia sp. D7 [OCSX]
4385765
4385690
-
Thr
TGT
[ENA]
¡û
>W1911518800
OFTA01000009
Betaproteobacteria
Cupriavidus taiwanensis [OFTA]
122749
122674
-
Thr
TGT
[ENA]
¡û
>W1911519295
OFTJ01000017
Betaproteobacteria
Cupriavidus taiwanensis [OFTJ]
101259
101184
-
Thr
TGT
[ENA]
¡û
>W1911519523
OFTN01000024
Betaproteobacteria
Cupriavidus taiwanensis [OFTN]
101259
101184
-
Thr
TGT
[ENA]
¡û
>W1911519732
OFTR01000008
Betaproteobacteria
Cupriavidus taiwanensis [OFTR]
98145
98070
-
Thr
TGT
[ENA]
¡û
>W1911519787
OFTS01000019
Betaproteobacteria
Cupriavidus taiwanensis [OFTS]
101553
101478
-
Thr
TGT
[ENA]
¡û
>W1911532237
OGUS01000124
Betaproteobacteria
Cupriavidus oxalaticus [OGUS]
318745
318670
-
Thr
TGT
[ENA]
¡û
>W1911532280
OGUT01000018
Betaproteobacteria
Cupriavidus taiwanensis [OGUT]
59422
59497
+
Thr
TGT
[ENA]
¡û
>W1810683935
QKWJ01000020
Betaproteobacteria
Cupriavidus lacunae S23 [QKWJ]
82588
82663
+
Thr
TGT
[ENA]
¡û
>W1810696473
QLTI01000013
Betaproteobacteria
Cupriavidus alkaliphilus MtRBr-3211 [QLTI]
103390
103465
+
Thr
TGT
[ENA]
¡û
>C151070015
CP010516
Betaproteobacteria
Cupriavidus gilardii CR3 [CP010516, CP010517]
3051261
3051186
-
Thr
TGT
-
¡û
>W1510073306
CDLW01000001
Betaproteobacteria
Ralstonia solanacearum Grenada 9-1 [CDLW]
2348432
2348507
+
Thr
TGT
[ENA]
¡û
>W1510073517
CDMB01000001
Betaproteobacteria
Ralstonia solanacearum UW163 [CDMB]
2026228
2026303
+
Thr
TGT
[ENA]
¡û
>W1511706162
LGTG01000214
Betaproteobacteria
Candidatus Burkholderia crenata crenata UZHbot9 [LGTG]
278
203
-
Thr
TGT
[ENA]
¡û
>C121016474
FP885906
Betaproteobacteria
Ralstonia solanacearum PSI07 [FP885906]
563074
563149
+
Thr
TGT
[Ensembl]
¡û
>C161070788
CP014306
Betaproteobacteria
Burkholderia sp. PAMC 26561 [CP014306, CP014307, CP014315]
844493
844418
-
Thr
TGT
[Ensembl]
¡û
>C161073083
CP014505
Betaproteobacteria
Burkholderia sp. PAMC 28687 [CP014505, CP014506, CP014507]
2960717
2960642
-
Thr
TGT
[Ensembl]
¡û
>W1610002262
AEJF01000028
Betaproteobacteria
Caballeronia mineralivorans PML1(12) [AEJF]
83644
83719
+
Thr
TGT
[ENA]
¡û
>W1610077586
BCZO01000011
Betaproteobacteria
Cupriavidus metallidurans NBRC 101272 [BCZO]
185191
185116
-
Thr
TGT
[ENA]
¡û
>W1610084823
CDGL010000148
Betaproteobacteria
Ralstonia solanacearum [CDGL]
6280
6205
-
Thr
TGT
[ENA]
¡û
>W1610206392
FCOC02000043
Betaproteobacteria
Caballeronia sordidicola [FCOC]
6022
6097
+
Thr
TGT
[ENA]
¡û
>W1610206815
FCOK02000096
Betaproteobacteria
Caballeronia udeis [FCOK]
773
698
-
Thr
TGT
[ENA]
¡û
>C131018269
FP885895
Betaproteobacteria
Ralstonia solanacearum CMR15 [FP885895]
500793
500868
+
Thr
TGT
[Ensembl]
¡û
>W1610521108
JIBY01000037
Betaproteobacteria
Ralstonia solanacearum [JIBY]
95679
95754
+
Thr
TGT
[ENA]
¡û
>W1610722882
LMCY01000032
Betaproteobacteria
Massilia sp. Root335 [LMCY]
7163
7238
+
Thr
TGT
[ENA]
¡û
>W1610738780
LMPF01000005
Betaproteobacteria
Burkholderia sp. Leaf177 [LMPF]
112898
112973
+
Thr
TGT
[ENA]
¡û
>W1610811254
LOXQ01000029
Betaproteobacteria
Burkholderia sp. MSMB2040 [LOXQ]
6514
6439
-
Thr
TGT
[ENA]
¡û
>W1610830768
LPKI01000050
Betaproteobacteria
Burkholderia sp. MSMB617WGS [LPKI]
7077
7002
-
Thr
TGT
[ENA]
¡û
>W1610959595
LVKV01000124
Betaproteobacteria
Ralstonia solanacearum [LVKV]
53468
53393
-
Thr
TGT
[ENA]
¡û
>W1710003701
AEJF01000028
Betaproteobacteria
Caballeronia mineralivorans PML1(12) [AEJF]
83644
83719
+
Thr
TGT
[ENA]
¡û
>W1710075224
BCZO01000011
Betaproteobacteria
Cupriavidus metallidurans NBRC 101272 [BCZO]
185191
185116
-
Thr
TGT
[ENA]
¡û
>W1710089685
CDGL010000148
Betaproteobacteria
Ralstonia solanacearum [CDGL]
6280
6205
-
Thr
TGT
[ENA]
¡û
>W1710207523
FCOC02000043
Betaproteobacteria
Caballeronia sordidicola [FCOC]
6022
6097
+
Thr
TGT
[ENA]
¡û
>W1710207565
FCOK02000096
Betaproteobacteria
Caballeronia udeis [FCOK]
773
698
-
Thr
TGT
[ENA]
¡û
>W1710619455
JIBY01000037
Betaproteobacteria
Ralstonia solanacearum [JIBY]
95679
95754
+
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK