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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.283660 (58 seq.)
>W1710873500
LMMV01000012
Betaproteobacteria
Pseudorhodoferax sp. Leaf267 [LMMV]
622582
622657
+
Glu
TTC
[ENA]
¡û
>W1710990957
LPXH01000035
Betaproteobacteria
Comamonas kerstersii 12322-1 [LPXH]
187455
187380
-
Glu
TTC
[ENA]
¡û
>W1710990978
LPXH01000036
Betaproteobacteria
Comamonas kerstersii 12322-1 [LPXH]
208
133
-
Glu
TTC
[ENA]
¡û
>W1711628344
MPOE01000003
Betaproteobacteria
Comamonas kerstersii 202149 [MPOE]
93
18
-
Glu
TTC
[ENA]
¡û
>W1711628364
MPOE01000008
Betaproteobacteria
Comamonas kerstersii 202149 [MPOE]
221025
220950
-
Glu
TTC
[ENA]
¡û
>W1711628451
MPOF01000013
Betaproteobacteria
Comamonas kerstersii 121606 [MPOF]
128370
128295
-
Glu
TTC
[ENA]
¡û
>W1711628453
MPOF01000013
Betaproteobacteria
Comamonas kerstersii 121606 [MPOF]
128070
127995
-
Glu
TTC
[ENA]
¡û
>W1711751379
MUNS01000017
Betaproteobacteria
Polaromonas sp. C04 [MUNS]
12276
12351
+
Glu
TTC
[ENA]
¡û
>C171091630
CP019236
Betaproteobacteria
Rhodoferax koreense DCY-110 [CP019236]
2003898
2003973
+
Glu
TTC
-
¡û
>C171104864
CP020121
Betaproteobacteria
Comamonas kerstersii 8943 [CP020121]
3455225
3455150
-
Glu
TTC
-
¡û
>C171104866
CP020121
Betaproteobacteria
Comamonas kerstersii 8943 [CP020121]
3454925
3454850
-
Glu
TTC
-
¡û
>C171104868
CP020121
Betaproteobacteria
Comamonas kerstersii 8943 [CP020121]
3454621
3454546
-
Glu
TTC
-
¡û
>C171104871
CP020121
Betaproteobacteria
Comamonas kerstersii 8943 [CP020121]
3454286
3454211
-
Glu
TTC
-
¡û
>C171104874
CP020121
Betaproteobacteria
Comamonas kerstersii 8943 [CP020121]
3453951
3453876
-
Glu
TTC
-
¡û
>W131171399
ARGE01000034
Betaproteobacteria
Brachymonas chironomi DSM 19884 [ARGE]
26120
26195
+
Glu
TTC
[ENA]
¡û
>W131224232
AUCQ01000007
Betaproteobacteria
Comamonas composti DSM 21721 [AUCQ]
48424
48349
-
Glu
TTC
[ENA]
¡û
>W131224249
AUCQ01000022
Betaproteobacteria
Comamonas composti DSM 21721 [AUCQ]
28705
28780
+
Glu
TTC
[ENA]
¡û
>W131224251
AUCQ01000022
Betaproteobacteria
Comamonas composti DSM 21721 [AUCQ]
28968
29043
+
Glu
TTC
[ENA]
¡û
>W131224253
AUCQ01000022
Betaproteobacteria
Comamonas composti DSM 21721 [AUCQ]
29231
29306
+
Glu
TTC
[ENA]
¡û
>WENV180357401
OBNN01007392
[OBNN] marine metagenome; Coastal water
98
23
-
Glu
TTC
[ENA]
¢þ
>WENV181165808
OEIS01192871
[OEIS] soil metagenome; soil
176
251
+
Glu
TTC
[ENA]
¢þ
>W141188702
AYMW01000001
Betaproteobacteria
Betaproteobacteria bacterium MOLA814 [AYMW]
529892
529817
-
Glu
TTC
[ENA]
¡û
>WENV183674169
ORJL011357186
[ORJL] groundwater metagenome; groundwater
167
242
+
Glu
TTC
[ENA]
¢þ
>WENV170654587
JRYL01001062
[JRYL] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater from different
26349
26274
-
Glu
TTC
[ENA]
¢þ
>C181158470
CP027667
Betaproteobacteria
Melaminivora suipulveris SC2-9 [CP027667]
3310928
3311003
+
Glu
TTC
-
¡û
>C181158473
CP027667
Betaproteobacteria
Melaminivora suipulveris SC2-9 [CP027667]
3311234
3311309
+
Glu
TTC
-
¡û
>C181158476
CP027667
Betaproteobacteria
Melaminivora suipulveris SC2-9 [CP027667]
3311548
3311623
+
Glu
TTC
-
¡û
>C181159970
CP027792
Betaproteobacteria
Pulveribacter suum SC2-7 [CP027792]
1627057
1627132
+
Glu
TTC
-
¡û
>C181159973
CP027792
Betaproteobacteria
Pulveribacter suum SC2-7 [CP027792]
1627374
1627449
+
Glu
TTC
-
¡û
>W1911244746
NSJB01000012
Betaproteobacteria
Vandammella animalimorsus NML00-0135 [NSJB]
35130
35055
-
Glu
TTC
[ENA]
¡û
>W1911244796
NSJC01000035
Betaproteobacteria
Vandammella animalimorsus NML97-0112 [NSJC]
16233
16308
+
Glu
TTC
[ENA]
¡û
>W1911244816
NSJD01000004
Betaproteobacteria
Vandammella animalimorsus NML79-0751 [NSJD]
166621
166696
+
Glu
TTC
[ENA]
¡û
>W1911244879
NSJE01000015
Betaproteobacteria
Vandammella animalimorsus NML120219 [NSJE]
75905
75980
+
Glu
TTC
[ENA]
¡û
>W1911270453
NTBH01000001
Betaproteobacteria
Vandammella animalimorsus NML91-0036 [NTBH]
847463
847388
-
Glu
TTC
[ENA]
¡û
>W1810072606
PEFL01000001
Betaproteobacteria
Comamonas sp. 26 [PEFL]
2910152
2910077
-
Glu
TTC
[ENA]
¡û
>W1810072608
PEFL01000001
Betaproteobacteria
Comamonas sp. 26 [PEFL]
2909866
2909791
-
Glu
TTC
[ENA]
¡û
>W1810072611
PEFL01000001
Betaproteobacteria
Comamonas sp. 26 [PEFL]
2909535
2909460
-
Glu
TTC
[ENA]
¡û
>W1810072614
PEFL01000001
Betaproteobacteria
Comamonas sp. 26 [PEFL]
2909204
2909129
-
Glu
TTC
[ENA]
¡û
>W1810072617
PEFL01000001
Betaproteobacteria
Comamonas sp. 26 [PEFL]
2901629
2901554
-
Glu
TTC
[ENA]
¡û
>W1810577604
QEOJ01000003
Betaproteobacteria
Rhodoferax sp. YR267 [QEOJ]
187153
187228
+
Glu
TTC
[ENA]
¡û
>W1510766087
JANU01000029
Betaproteobacteria
Caenimonas sp. SL110 [JANU]
60453
60528
+
Glu
TTC
[ENA]
¡û
>C11118965
CP000245
Betaproteobacteria
Ramlibacter tataouinensis TTB310 [CP000245]
1109889
1109964
+
Glu
TTC
[Ensembl]
¡û
>W1511596000
LBNQ01000011
Betaproteobacteria
Lampropedia cohaerens CT6 [LBNQ]
27810
27735
-
Glu
TTC
[ENA]
¡û
>W1511596026
LBNQ01000033
Betaproteobacteria
Lampropedia cohaerens CT6 [LBNQ]
226485
226560
+
Glu
TTC
[ENA]
¡û
>WENV056514
AACY023258616
Marine microbial communities from Global Ocean Sampling (GOS)
1698
1621
-
Glu
TTC
[ENA]
>W121108893
ALEE01000010
Betaproteobacteria
Melaminivora alkalimesophila CRZ1 [ALEE]
202
127
-
Glu
TTC
[ENA]
¡û
>W1610609957
LFYP01000025
Betaproteobacteria
Comamonas kerstersii [LFYP]
117
192
+
Glu
TTC
[ENA]
¡û
>W1610735846
LMMV01000012
Betaproteobacteria
Pseudorhodoferax sp. Leaf267 [LMMV]
622582
622657
+
Glu
TTC
[ENA]
¡û
>W1610845629
LPXH01000035
Betaproteobacteria
Comamonas kerstersii 12322-1 [LPXH]
187455
187380
-
Glu
TTC
[ENA]
¡û
>W1610845650
LPXH01000036
Betaproteobacteria
Comamonas kerstersii 12322-1 [LPXH]
208
133
-
Glu
TTC
[ENA]
¡û
>W1710522997
FNHP01000008
Betaproteobacteria
Oryzisolibacter propanilivorax EPL6 [FNHP]
150091
150166
+
Glu
TTC
[ENA]
¡û
>W1710523000
FNHP01000008
Betaproteobacteria
Oryzisolibacter propanilivorax EPL6 [FNHP]
150408
150483
+
Glu
TTC
[ENA]
¡û
>W1710524812
FNJA01000003
Betaproteobacteria
Rhodoferax sp. OV413 OV413 [FNJA]
384080
384005
-
Glu
TTC
[ENA]
¡û
>W1710557408
FOKZ01000018
Betaproteobacteria
Polaromonas sp. OV174 [FOKZ]
22346
22421
+
Glu
TTC
[ENA]
¡û
>W1710557410
FOKZ01000018
Betaproteobacteria
Polaromonas sp. OV174 [FOKZ]
22734
22809
+
Glu
TTC
[ENA]
¡û
>W1710583664
FQUZ01000010
Betaproteobacteria
Lampropedia hyalina DSM 16112 [FQUZ]
23331
23256
-
Glu
TTC
[ENA]
¡û
>W1710583682
FQUZ01000028
Betaproteobacteria
Lampropedia hyalina DSM 16112 [FQUZ]
5244
5319
+
Glu
TTC
[ENA]
¡û
>W1710731302
LFYP01000025
Betaproteobacteria
Comamonas kerstersii [LFYP]
117
192
+
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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