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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.283668 (6 seq.)
>WENV180006478
FLRY01072323
[FLRY] metagenome; saliva
175
249
+
Ala
TGC
[ENA]
¡û
>WENV180704906
ODEJ01000242
[ODEJ] human metagenome; G_DNA_Tongue dorsum
30439
30365
-
Ala
TGC
[ENA]
¡û
>WENV180763257
ODIA01000366
[ODIA] human metagenome; G_DNA_Tongue dorsum
1590
1516
-
Ala
TGC
[ENA]
¡û
>WENV180946137
ODUD01009373
[ODUD] human metagenome; G_DNA_Tongue dorsum
581
655
+
Ala
TGC
[ENA]
¡û
>WENV181108323
OEEJ01000006
[OEEJ] human metagenome; G_DNA_Tongue dorsum
305912
305986
+
Ala
TGC
[ENA]
¡û
>WENV181157352
OEIG01002592
[OEIG] human metagenome; G_DNA_Hard palate
3564
3490
-
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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