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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
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Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.283670 (66 seq.)
>A171002712
CP003050
Euryarchaeota
Halovivax ruber XH-70 [CP003050]
2819614
2819686
+
Asn
GTT
-
¡û
>A171003066
CP003372
Euryarchaeota
Natrinema pellirubrum DSM 15624 [CP003372]
3347554
3347482
-
Asn
GTT
-
¡û
>A171003091
CP003377
Euryarchaeota
Natronobacterium gregoryi SP2 [CP003377]
1282350
1282423
+
Asn
GTT
-
¡û
>A171003156
CP003412
Euryarchaeota
Natrinema sp. J7-2 [CP003412]
652816
652889
+
Asn
GTT
-
¡û
>A171003464
CP003929
Euryarchaeota
Natronococcus occultus SP4 [CP003929]
251316
251388
+
Asn
GTT
-
¡û
>A171006903
CP019285
Euryarchaeota
Halobiforma lacisalsi AJ5 [CP019285]
608089
608162
+
Asn
GTT
-
¡û
>A171006969
CP019327
Euryarchaeota
Natronorubrum daqingense JX313 [CP019327]
3195816
3195744
-
Asn
GTT
-
¡û
>A171007018
CP019893
Euryarchaeota
Natrarchaeobaculum aegyptiacum JW/NM-HA 15 [CP019893]
1081413
1081341
-
Asn
GTT
-
¡û
>A178000113
CP001860
Euryarchaeota
Haloterrigena turkmenica DSM 5511 [CP001860]
447035
447141
+
Asn
GTT
-
¡û
>A178000124
CP001932
Euryarchaeota
Natrialba magadii ATCC 43099 [CP001932]
2265850
2265956
+
Asn
GTT
-
¡û
>A178000281
CP002839
Euryarchaeota
Halopiger xanaduensis SH-6 [CP002839]
1101035
1101141
+
Asn
GTT
-
¡û
>A178000414
CP007055
Euryarchaeota
Halostagnicola larsenii XH-48 [CP007055]
296492
296388
-
Asn
GTT
-
¡û
>WENV170679911
LFCJ01001411
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
5522
5594
+
Asn
GTT
[ENA]
¢þ
>WENV170681953
LFFM01004219
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
74
2
-
Asn
GTT
[ENA]
¢þ
>WENV170703059
LKMJ01006087
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
2790
2863
+
Asn
GTT
[ENA]
¢þ
>WENV170703525
LKMJ01013143
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
103
30
-
Asn
GTT
[ENA]
¢þ
>WENV170704081
LKMJ01022158
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
5196
5123
-
Asn
GTT
[ENA]
¢þ
>W1910226701
FMZP01000011
Euryarchaeota
Natrinema hispanicum CDM_1 [FMZP]
40872
40799
-
Asn
GTT
[ENA]
¡û
>W1910227136
FNLC01000001
Euryarchaeota
Natronobacterium texcoconense DSM 24767 [FNLC]
54944
54871
-
Asn
GTT
[ENA]
¡û
>W1910229306
FNWL01000001
Euryarchaeota
Natronorubrum sediminis CGMCC 1.8981 [FNWL]
1250118
1250191
+
Asn
GTT
[ENA]
¡û
>W1910229807
FOFD01000003
Euryarchaeota
Natrinema salaciae DSM 25055 [FOFD]
841184
841257
+
Asn
GTT
[ENA]
¡û
>W1910229906
FOIC01000008
Euryarchaeota
Natrinema hispanicum CDM_6 [FOIC]
65941
65868
-
Asn
GTT
[ENA]
¡û
>W1910229962
FOIS01000004
Euryarchaeota
Natrinema salifodinae CGMCC 1.12284 [FOIS]
2889
2816
-
Asn
GTT
[ENA]
¡û
>W1910230236
FOKW01000001
Euryarchaeota
Halobiforma haloterrestris DSM 13078 [FOKW]
11353
11280
-
Asn
GTT
[ENA]
¡û
>W1910230435
FORO01000005
Euryarchaeota
Natronobacterium gregoryi SP2 [FORO]
46014
45941
-
Asn
GTT
[ENA]
¡û
>W1910340516
FTNP01000004
Euryarchaeota
Natronorubrum daqingense CGMCC 1.8909 [FTNP]
9391
9463
+
Asn
GTT
[ENA]
¡û
>W1910340560
FTNR01000012
Euryarchaeota
Natronorubrum thiooxidans type strain: HArc- [FTNR]
5298
5226
-
Asn
GTT
[ENA]
¡û
>W1910568508
JDTG01000011
Euryarchaeota
Natrinema thermotolerans A29 [JDTG]
4990
5062
+
Asn
GTT
[ENA]
¡û
>W1910569063
JHUT02000003
Euryarchaeota
Natrinema mahii H13 [JHUT]
392528
392600
+
Asn
GTT
[ENA]
¡û
>W1910572728
JNCS01000010
Euryarchaeota
Natrinema altunense AJ2 [JNCS]
2357
2284
-
Asn
GTT
[ENA]
¡û
>W1910575893
JROF01000031
Euryarchaeota
Natrinema salifodinae KCY07-B2 [JROF]
46541
46614
+
Asn
GTT
[ENA]
¡û
>W1910575903
JROF01000068
Euryarchaeota
Natrinema salifodinae KCY07-B2 [JROF]
2613
2540
-
Asn
GTT
[ENA]
¡û
>W1910583020
JXAN01000067
Euryarchaeota
Natrinema altunense 1A4-DGR [JXAN]
6591
6518
-
Asn
GTT
[ENA]
¡û
>W1910646132
LWLN01000001
Euryarchaeota
Natrinema saccharevitans AB14 [LWLN]
2808747
2808675
-
Asn
GTT
[ENA]
¡û
>W1911433968
NXNI01000001
Euryarchaeota
Natrinema ejinorense JCM 13890 [NXNI]
5526
5599
+
Asn
GTT
[ENA]
¡û
>W1911591323
PKKI01000008
Euryarchaeota
Natronobacterium gregoryi SP2 [PKKI]
82450
82523
+
Asn
GTT
[ENA]
¡û
>W1610004043
AGFZ01000017
Euryarchaeota
Halobiforma lacisalsi AJ5 [AGFZ]
71591
71518
-
Asn
GTT
[ENA]
¡û
>W1610004085
AGIM01000004
Euryarchaeota
Natronobacterium gregoryi SP2 [AGIM]
214742
214815
+
Asn
GTT
[ENA]
¡û
>W1610004152
AGIN01000016
Euryarchaeota
Natrinema pellirubrum DSM 15624 [AGIN]
114976
115048
+
Asn
GTT
[ENA]
¡û
>W1610005385
AJVG01000023
Euryarchaeota
Natrinema sp. J7-1 [AJVG]
17457
17530
+
Asn
GTT
[ENA]
¡û
>W1610011939
AOHX01000026
Euryarchaeota
Natronorubrum sulfidifaciens JCM 14089 [AOHX]
457314
457386
+
Asn
GTT
[ENA]
¡û
>W1610011996
AOHY01000010
Euryarchaeota
Natronorubrum bangense JCM 10635 [AOHY]
23564
23492
-
Asn
GTT
[ENA]
¡û
>W1610012044
AOHZ01000044
Euryarchaeota
Natronolimnohabitans innermongolicus JCM 12255 [AOHZ]
16338
16265
-
Asn
GTT
[ENA]
¡û
>W1610012074
AOIA01000034
Euryarchaeota
Natronococcus jeotgali DSM 18795 [AOIA]
192096
192168
+
Asn
GTT
[ENA]
¡û
>W1610012117
AOIB01000014
Euryarchaeota
Natronococcus amylolyticus DSM 10524 [AOIB]
198995
198922
-
Asn
GTT
[ENA]
¡û
>W1610012150
AOIC01000003
Euryarchaeota
Natronobacterium gregoryi SP2 [AOIC]
77820
77893
+
Asn
GTT
[ENA]
¡û
>W1610012267
AOIE01000102
Euryarchaeota
Natrinema pellirubrum DSM 15624 [AOIE]
4923
4851
-
Asn
GTT
[ENA]
¡û
>W1610012277
AOII01000008
Euryarchaeota
Natrinema pallidum DSM 3751 [AOII]
6460
6533
+
Asn
GTT
[ENA]
¡û
>W1610012353
AOIJ01000057
Euryarchaeota
Natrinema gari JCM 14663 [AOIJ]
66949
67022
+
Asn
GTT
[ENA]
¡û
>W1610012406
AOIK01000038
Euryarchaeota
Natrinema altunense JCM 12890 [AOIK]
28191
28264
+
Asn
GTT
[ENA]
¡û
>W1610012432
AOIL01000048
Euryarchaeota
Natrialba taiwanensis DSM 12281 [AOIL]
100072
100144
+
Asn
GTT
[ENA]
¡û
>W1610012476
AOIM01000035
Euryarchaeota
Natrialba hulunbeirensis JCM 10989 [AOIM]
171497
171569
+
Asn
GTT
[ENA]
¡û
>W1610012502
AOIN01000008
Euryarchaeota
Natrialba chahannaoensis JCM 10990 [AOIN]
163091
163018
-
Asn
GTT
[ENA]
¡û
>W1610012572
AOIO01000038
Euryarchaeota
Natrialba asiatica DSM 12278 [AOIO]
83147
83074
-
Asn
GTT
[ENA]
¡û
>W1610012603
AOIP01000016
Euryarchaeota
Natrialba aegyptia DSM 13077 [AOIP]
99217
99145
-
Asn
GTT
[ENA]
¡û
>W1610012649
AOIQ01000017
Euryarchaeota
Halovivax asiaticus JCM 14624 [AOIQ]
24720
24647
-
Asn
GTT
[ENA]
¡û
>W1610012680
AOIR01000053
Euryarchaeota
Natrinema thermotolerans DSM 11522 [AOIR]
223323
223395
+
Asn
GTT
[ENA]
¡û
>W1610012711
AOIS01000011
Euryarchaeota
Haloterrigena salina JCM 13891 [AOIS]
66461
66388
-
Asn
GTT
[ENA]
¡û
>W1610012755
AOIT01000010
Euryarchaeota
Natrinema limicola JCM 13563 [AOIT]
109791
109718
-
Asn
GTT
[ENA]
¡û
>W1610014412
AOLZ01000029
Euryarchaeota
Halobiforma lacisalsi AJ5 [AOLZ]
15169
15242
+
Asn
GTT
[ENA]
¡û
>W1610014483
AOMA01000171
Euryarchaeota
Halobiforma nitratireducens JCM 10879 [AOMA]
35101
35029
-
Asn
GTT
[ENA]
¡û
>W1610020280
ASGZ01000013
Euryarchaeota
Candidatus Halobonum tyrrellensis tyrrellensis G22 [ASGZ]
91685
91760
+
Asn
GTT
[ENA]
¡û
>W1610082978
CBMA010000025
Euryarchaeota
Halopiger djelfimassiliensis IIH2 [CBMA]
23778
23851
+
Asn
GTT
[ENA]
¡û
>W1610083039
CBMB010000010
Euryarchaeota
Halopiger goleimassiliensis IIH3 [CBMB]
50160
50232
+
Asn
GTT
[ENA]
¡û
>W1610671384
LKCV01000140
Euryarchaeota
Haloterrigena turkmenica WANU15 [LKCV]
10634
10561
-
Asn
GTT
[ENA]
¡û
>W1610682663
LKNG01000111
Euryarchaeota
Natrialbaceae archaeon Tc-Br11_E2g8 [LKNG]
74
2
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK