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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.283671 (53 seq.)
>A171001109
CP001860
Euryarchaeota
Haloterrigena turkmenica DSM 5511 [CP001860]
330502
330574
+
Pro
TGG
-
¡û
>A171003062
CP003372
Euryarchaeota
Natrinema pellirubrum DSM 15624 [CP003372]
3584696
3584768
+
Pro
TGG
-
¡û
>A171003154
CP003412
Euryarchaeota
Natrinema sp. J7-2 [CP003412]
239511
239583
+
Pro
TGG
-
¡û
>A171003509
CP003929
Euryarchaeota
Natronococcus occultus SP4 [CP003929]
160397
160325
-
Pro
TGG
-
¡û
>A171004124
CP007055
Euryarchaeota
Halostagnicola larsenii XH-48 [CP007055]
178740
178813
+
Pro
TGG
-
¡û
>A171006966
CP019327
Euryarchaeota
Natronorubrum daqingense JX313 [CP019327]
2575956
2576028
+
Pro
TGG
-
¡û
>WENV170660829
JXWU01040692
[JXWU] soil metagenome; rice field; organic control Plot
608
680
+
Pro
TGG
[ENA]
¢þ
>WENV170680114
LFCJ01004263
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
5272
5347
+
Pro
TGG
[ENA]
¢þ
>WENV170681549
LFFM01001335
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
74
2
-
Pro
TGG
[ENA]
¢þ
>WENV170702717
LKMJ01003897
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
54
126
+
Pro
TGG
[ENA]
¢þ
>WENV170702798
LKMJ01004162
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
6065
5993
-
Pro
TGG
[ENA]
¢þ
>W1910226695
FMZP01000010
Euryarchaeota
Natrinema hispanicum CDM_1 [FMZP]
68100
68028
-
Pro
TGG
[ENA]
¡û
>W1910226930
FNFE01000004
Euryarchaeota
Natronorubrum texcoconense B4,CECT 8067,JCM 17497 [FNFE]
219304
219232
-
Pro
TGG
[ENA]
¡û
>W1910229337
FNWL01000003
Euryarchaeota
Natronorubrum sediminis CGMCC 1.8981 [FNWL]
128347
128419
+
Pro
TGG
[ENA]
¡û
>W1910229814
FOFD01000003
Euryarchaeota
Natrinema salaciae DSM 25055 [FOFD]
533445
533373
-
Pro
TGG
[ENA]
¡û
>W1910229916
FOIC01000011
Euryarchaeota
Natrinema hispanicum CDM_6 [FOIC]
47442
47514
+
Pro
TGG
[ENA]
¡û
>W1910229960
FOIS01000004
Euryarchaeota
Natrinema salifodinae CGMCC 1.12284 [FOIS]
427139
427067
-
Pro
TGG
[ENA]
¡û
>W1910230848
FOZS01000002
Euryarchaeota
Halostagnicola kamekurae DSM 22427 [FOZS]
121168
121240
+
Pro
TGG
[ENA]
¡û
>W1910340519
FTNP01000007
Euryarchaeota
Natronorubrum daqingense CGMCC 1.8909 [FTNP]
75141
75213
+
Pro
TGG
[ENA]
¡û
>W1910340561
FTNR01000014
Euryarchaeota
Natronorubrum thiooxidans type strain: HArc- [FTNR]
18283
18355
+
Pro
TGG
[ENA]
¡û
>W1910568507
JDTG01000010
Euryarchaeota
Natrinema thermotolerans A29 [JDTG]
19464
19392
-
Pro
TGG
[ENA]
¡û
>W1910569072
JHUT02000003
Euryarchaeota
Natrinema mahii H13 [JHUT]
159315
159243
-
Pro
TGG
[ENA]
¡û
>W1910572577
JMIP02000020
Euryarchaeota
Halostagnicola sp. A56 [JMIP]
216082
216009
-
Pro
TGG
[ENA]
¡û
>W1910572732
JNCS01000011
Euryarchaeota
Natrinema altunense AJ2 [JNCS]
81520
81448
-
Pro
TGG
[ENA]
¡û
>W1910575878
JROF01000011
Euryarchaeota
Natrinema salifodinae KCY07-B2 [JROF]
79065
78993
-
Pro
TGG
[ENA]
¡û
>W1910583009
JXAN01000036
Euryarchaeota
Natrinema altunense 1A4-DGR [JXAN]
13683
13755
+
Pro
TGG
[ENA]
¡û
>W1910646127
LWLN01000001
Euryarchaeota
Natrinema saccharevitans AB14 [LWLN]
3039821
3039893
+
Pro
TGG
[ENA]
¡û
>W1911433991
NXNI01000001
Euryarchaeota
Natrinema ejinorense JCM 13890 [NXNI]
2924920
2924848
-
Pro
TGG
[ENA]
¡û
>W1911572238
PDBS01000001
Euryarchaeota
Natrinema sp. CBA1119 [PDBS]
1314360
1314288
-
Pro
TGG
[ENA]
¡û
>W1911717999
QQTY01000004
Euryarchaeota
Natronorubrum halophilum SHR37 [QQTY]
187403
187475
+
Pro
TGG
[ENA]
¡û
>W1610001031
ACIT01000001
Euryarchaeota
Natrialba magadii ATCC 43099 [ACIT]
376294
376366
+
Pro
TGG
[ENA]
¡û
>W1610004038
AGFZ01000016
Euryarchaeota
Halobiforma lacisalsi AJ5 [AGFZ]
33619
33547
-
Pro
TGG
[ENA]
¡û
>W1610004150
AGIN01000015
Euryarchaeota
Natrinema pellirubrum DSM 15624 [AGIN]
121063
121135
+
Pro
TGG
[ENA]
¡û
>W1610005355
AJVG01000001
Euryarchaeota
Natrinema sp. J7-1 [AJVG]
143319
143391
+
Pro
TGG
[ENA]
¡û
>W1610011924
AOHW01000050
Euryarchaeota
Natronorubrum tibetense GA33 [AOHW]
18199
18271
+
Pro
TGG
[ENA]
¡û
>W1610011954
AOHX01000029
Euryarchaeota
Natronorubrum sulfidifaciens JCM 14089 [AOHX]
72432
72504
+
Pro
TGG
[ENA]
¡û
>W1610011995
AOHY01000010
Euryarchaeota
Natronorubrum bangense JCM 10635 [AOHY]
61082
61010
-
Pro
TGG
[ENA]
¡û
>W1610012046
AOHZ01000047
Euryarchaeota
Natronolimnohabitans innermongolicus JCM 12255 [AOHZ]
54468
54540
+
Pro
TGG
[ENA]
¡û
>W1610012079
AOIA01000034
Euryarchaeota
Natronococcus jeotgali DSM 18795 [AOIA]
96565
96493
-
Pro
TGG
[ENA]
¡û
>W1610012126
AOIB01000015
Euryarchaeota
Natronococcus amylolyticus DSM 10524 [AOIB]
37629
37701
+
Pro
TGG
[ENA]
¡û
>W1610012224
AOID01000048
Euryarchaeota
Natrinema versiforme JCM 10478 [AOID]
13770
13698
-
Pro
TGG
[ENA]
¡û
>W1610012274
AOIE01000104
Euryarchaeota
Natrinema pellirubrum DSM 15624 [AOIE]
80860
80932
+
Pro
TGG
[ENA]
¡û
>W1610012289
AOII01000020
Euryarchaeota
Natrinema pallidum DSM 3751 [AOII]
108041
108113
+
Pro
TGG
[ENA]
¡û
>W1610012346
AOIJ01000054
Euryarchaeota
Natrinema gari JCM 14663 [AOIJ]
10338
10266
-
Pro
TGG
[ENA]
¡û
>W1610012402
AOIK01000035
Euryarchaeota
Natrinema altunense JCM 12890 [AOIK]
240244
240172
-
Pro
TGG
[ENA]
¡û
>W1610012678
AOIR01000052
Euryarchaeota
Natrinema thermotolerans DSM 11522 [AOIR]
10125
10053
-
Pro
TGG
[ENA]
¡û
>W1610012717
AOIS01000012
Euryarchaeota
Haloterrigena salina JCM 13891 [AOIS]
3359
3287
-
Pro
TGG
[ENA]
¡û
>W1610012792
AOIT01000052
Euryarchaeota
Natrinema limicola JCM 13563 [AOIT]
35322
35250
-
Pro
TGG
[ENA]
¡û
>W1610018974
AQZY01000005
Euryarchaeota
Halomicrobium katesii DSM 19301 [AQZY]
127729
127801
+
Pro
TGG
[ENA]
¡û
>W1610019024
ARPH01000004
Euryarchaeota
Natronorubrum tibetense GA33 [ARPH]
412838
412766
-
Pro
TGG
[ENA]
¡û
>W1610082975
CBMA010000023
Euryarchaeota
Halopiger djelfimassiliensis IIH2 [CBMA]
55468
55396
-
Pro
TGG
[ENA]
¡û
>W1610083041
CBMB010000010
Euryarchaeota
Halopiger goleimassiliensis IIH3 [CBMB]
216043
216115
+
Pro
TGG
[ENA]
¡û
>W1610682194
LKMM01000060
Euryarchaeota
Natrialbaceae archaeon B1-Br10_E2g27 [LKMM]
5272
5347
+
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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