This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.283675 (52 seq.)
>A171000805
CP001690
Euryarchaeota
Halogeometricum borinquense DSM 11551 PR 3 [CP001690]
202002
202075
+
Gln
CTG
-
¡û
>A171001380
CP001956
Euryarchaeota
Haloferax volcanii DS2 [CP001956]
11661
11733
+
Gln
CTG
-
¡û
>A171004389
CP008874
Euryarchaeota
Halanaeroarchaeum sulfurireducens HSR2 [CP008874]
9995
10068
+
Gln
CTG
-
¡û
>A171006147
CP011564
Euryarchaeota
Halanaeroarchaeum sulfurireducens M27-SA2 [CP011564]
9995
10068
+
Gln
CTG
-
¡û
>A171006189
CP011947
Euryarchaeota
Haloferax gibbonsii ARA6 [CP011947]
11736
11809
+
Gln
CTG
-
¡û
>A171006681
CP016070
Euryarchaeota
Halodesulfurarchaeum formicicum HTSR1 [CP016070]
13146
13218
+
Gln
CTG
-
¡û
>A171006723
CP016804
Euryarchaeota
Halodesulfurarchaeum formicicum HSR6 [CP016804]
13146
13218
+
Gln
CTG
-
¡û
>WENV180318656
OBKM01003731
[OBKM] metagenome; water
4384
4312
-
Gln
CTG
[ENA]
¢þ
>WENV170680386
LFCJ01010113
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
129
56
-
Gln
CTG
[ENA]
¢þ
>WENV170680572
LFCJ01015157
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
53
125
+
Gln
CTG
[ENA]
¢þ
>W1910186230
CCDK010000002
Euryarchaeota
Haloferax prahovense Arc-Hr [CCDK]
612936
613008
+
Gln
CTG
[ENA]
¡û
>W1910193523
CSTE01000001
Euryarchaeota
Haloferax massiliensis Arc-Hr [CSTE]
653205
653278
+
Gln
CTG
[ENA]
¡û
>W1910227113
FNKQ01000003
Euryarchaeota
Halopelagius longus CGMCC 1.12397 [FNKQ]
750717
750790
+
Gln
CTG
[ENA]
¡û
>W1910229555
FNYR01000001
Euryarchaeota
Halohasta litchfieldiae DSM 22187 [FNYR]
63151
63223
+
Gln
CTG
[ENA]
¡û
>W1910229752
FODV01000003
Euryarchaeota
Halogranum amylolyticum CGMCC 1.10121 [FODV]
430847
430919
+
Gln
CTG
[ENA]
¡û
>W1910230358
FOOQ01000001
Euryarchaeota
Halopelagius inordinatus CGMCC 1.7739 [FOOQ]
1290
1217
-
Gln
CTG
[ENA]
¡û
>W1910230749
FOYT01000001
Euryarchaeota
Halogeometricum rufum CGMCC 1.7736 [FOYT]
107744
107671
-
Gln
CTG
[ENA]
¡û
>W1910573482
JPES01000063
Euryarchaeota
Haloferax sp. ATB1 [JPES]
14469
14542
+
Gln
CTG
[ENA]
¡û
>W1910573490
JPES01000091
Euryarchaeota
Haloferax sp. ATB1 [JPES]
3039
3112
+
Gln
CTG
[ENA]
¡û
>W1911629766
PSYS01000001
Euryarchaeota
Haloferax sp. Atlit-47N [PSYS]
1576943
1576871
-
Gln
CTG
[ENA]
¡û
>W1911629799
PSYT01000001
Euryarchaeota
Haloferax sp. Atlit-24N [PSYT]
86581
86653
+
Gln
CTG
[ENA]
¡û
>W1911629890
PSYU01000004
Euryarchaeota
Haloferax sp. Atlit-19N [PSYU]
93409
93481
+
Gln
CTG
[ENA]
¡û
>W1911629945
PSYV01000003
Euryarchaeota
Haloferax sp. Atlit-16N [PSYV]
221368
221296
-
Gln
CTG
[ENA]
¡û
>W1911629962
PSYW01000001
Euryarchaeota
Haloferax sp. Atlit-12N [PSYW]
1460574
1460501
-
Gln
CTG
[ENA]
¡û
>W1911630045
PSYX01000004
Euryarchaeota
Haloferax sp. Atlit-10N [PSYX]
221368
221296
-
Gln
CTG
[ENA]
¡û
>W1911630049
PSYY01000001
Euryarchaeota
Haloferax sp. Atlit-4N [PSYY]
92829
92902
+
Gln
CTG
[ENA]
¡û
>W1911655714
QEQI01000007
Euryarchaeota
Haloferax sp. Atlit-48N [QEQI]
86635
86707
+
Gln
CTG
[ENA]
¡û
>W1911655733
QEQJ01000001
Euryarchaeota
Haloferax sp. Atlit-6N [QEQJ]
1655404
1655331
-
Gln
CTG
[ENA]
¡û
>W1911682222
QKMU01000001
Euryarchaeota
Halogeometricum sp. wsp3 [QKMU]
2318021
2317948
-
Gln
CTG
[ENA]
¡û
>W1911682364
QKNY01000018
Euryarchaeota
Halonotius aquaticus F13-13 [QKNY]
417582
417654
+
Gln
CTG
[ENA]
¡û
>W1911709478
QPLO01000001
Euryarchaeota
Haloferax sp. Atlit-109R [QPLO]
86581
86653
+
Gln
CTG
[ENA]
¡û
>W1911709527
QPLP01000001
Euryarchaeota
Haloferax sp. Atlit-105R [QPLP]
86581
86653
+
Gln
CTG
[ENA]
¡û
>W1911717819
QQST01000001
Euryarchaeota
Halopelagius longus BC12-B1 [QQST]
1772462
1772535
+
Gln
CTG
[ENA]
¡û
>W1610000749
ABTX01000001
Euryarchaeota
Halogeometricum borinquense DSM 11551 [ABTX]
1408598
1408671
+
Pseudo
CTG
[ENA]
¡û
>W1610011508
ANPG01000127
Euryarchaeota
Haloferax sp. BAB-2207 BAB2207 [ANPG]
5707
5779
+
Pseudo
CTG
[ENA]
¡û
>W1610011773
AOHT01000037
Euryarchaeota
Halogeometricum borinquense DSM 11551 [AOHT]
100024
100097
+
Pseudo
CTG
[ENA]
¡û
>W1610011838
AOHU01000105
Euryarchaeota
Haloferax volcanii DS2 [AOHU]
17859
17931
+
Pseudo
CTG
[ENA]
¡û
>W1610012862
AOIV01000023
Euryarchaeota
Halogeometricum pallidum JCM 14848 [AOIV]
116202
116130
-
Pseudo
CTG
[ENA]
¡û
>W1610013477
AOLD01000033
Euryarchaeota
Haloferax sp. ATCC BAA-646 [AOLD]
111879
111807
-
Pseudo
CTG
[ENA]
¡û
>W1610013547
AOLE01000025
Euryarchaeota
Haloferax sp. ATCC BAA-645 [AOLE]
207556
207484
-
Pseudo
CTG
[ENA]
¡û
>W1610013583
AOLF01000031
Euryarchaeota
Haloferax sp. ATCC BAA-644 [AOLF]
23442
23514
+
Pseudo
CTG
[ENA]
¡û
>W1610013601
AOLG01000008
Euryarchaeota
Haloferax prahovense DSM 18310 [AOLG]
93138
93210
+
Pseudo
CTG
[ENA]
¡û
>W1610013696
AOLH01000026
Euryarchaeota
Haloferax lucentense DSM 14919 [AOLH]
200657
200585
-
Pseudo
CTG
[ENA]
¡û
>W1610013769
AOLJ01000012
Euryarchaeota
Haloferax gibbonsii ATCC 33959 [AOLJ]
5175
5102
-
Pseudo
CTG
[ENA]
¡û
>W1610013803
AOLK01000009
Euryarchaeota
Haloferax elongans ATCC BAA-1513 [AOLK]
17900
17972
+
Pseudo
CTG
[ENA]
¡û
>W1610013881
AOLL01000013
Euryarchaeota
Haloferax alexandrinus JCM 10717 [AOLL]
336311
336239
-
Pseudo
CTG
[ENA]
¡û
>W1610013949
AOLM01000025
Euryarchaeota
Haloferax sulfurifontis ATCC BAA-897 [AOLM]
6138
6211
+
Pseudo
CTG
[ENA]
¡û
>W1610013975
AOLN01000011
Euryarchaeota
Haloferax mucosum ATCC BAA-1512 [AOLN]
473135
473063
-
Pseudo
CTG
[ENA]
¡û
>W1610014061
AOLP01000009
Euryarchaeota
Haloferax denitrificans ATCC 35960 [AOLP]
92896
92969
+
Pseudo
CTG
[ENA]
¡û
>W1610784299
LOEP01000023
Euryarchaeota
Haloferax sp. Q22 [LOEP]
95891
95964
+
Pseudo
CTG
[ENA]
¡û
>W1610799859
LOPV01000429
Euryarchaeota
Haloferax profundi SB29 [LOPV]
3108
3036
-
Pseudo
CTG
[ENA]
¡û
>W1610799906
LOPW01000065
Euryarchaeota
Haloferax marisrubri SB3 [LOPW]
28369
28296
-
Pseudo
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK