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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.283676 (90 seq.)
>A171000829
CP001690
Euryarchaeota
Halogeometricum borinquense DSM 11551 PR 3 [CP001690]
2758393
2758465
+
Pro
TGG
-
¡û
>A171001204
CP001868
Euryarchaeota
Haloferax mediterranei ATCC 33500 CGMCC 1.2087 [CP001868]
250393
250320
-
Pro
TGG
-
¡û
>A171001427
CP001956
Euryarchaeota
Haloferax volcanii DS2 [CP001956]
252098
252026
-
Pro
TGG
-
¡û
>A171006239
CP011947
Euryarchaeota
Haloferax gibbonsii ARA6 [CP011947]
233022
232949
-
Pro
TGG
-
¡û
>A171006856
CP019067
Euryarchaeota
Halorientalis sp. IM1011 [CP019067]
1883418
1883490
+
Pro
TGG
-
¡û
>ENV08001789
ABOG01000218
saltern metagenome; microbial fraction from medium salinity saltern in San Diego, CA
86
14
-
Pro
TGG
[ENA]
¡û
>ENV08001795
ABOG01001920
saltern metagenome; microbial fraction from medium salinity saltern in San Diego, CA
2
74
+
Pro
TGG
[ENA]
¡û
>ENV08001796
ABOG01002131
saltern metagenome; microbial fraction from medium salinity saltern in San Diego, CA
103
31
-
Pro
TGG
[ENA]
¡û
>ENV08001798
ABOG01002720
saltern metagenome; microbial fraction from medium salinity saltern in San Diego, CA
21
93
+
Pro
TGG
[ENA]
¡û
>WENV170009045
APHM01020880
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
355
283
-
Pro
TGG
[ENA]
¢þ
>WENV170659990
JXWS01073605
[JXWS] soil metagenome; rice field; elevated CO2
47
119
+
Pro
TGG
[ENA]
¢þ
>WENV170680281
LFCJ01006985
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
2807
2879
+
Pro
TGG
[ENA]
¢þ
>WENV170681106
LFFM01000062
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
30256
30183
-
Pro
TGG
[ENA]
¢þ
>WENV170681997
LFFM01004724
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
6009
6081
+
Pro
TGG
[ENA]
¢þ
>WENV170682331
LFFM01009353
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
4145
4218
+
Pro
TGG
[ENA]
¢þ
>WENV170703601
LKMJ01014438
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
957
884
-
Pro
TGG
[ENA]
¢þ
>WENV170703955
LKMJ01019651
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
5137
5065
-
Pro
TGG
[ENA]
¢þ
>WENV170704129
LKMJ01023258
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
5262
5190
-
Pro
TGG
[ENA]
¢þ
>W1910006680
BBJN01000055
Euryarchaeota
Halolamina rubra CBA1107 [BBJN]
30311
30383
+
Pro
TGG
[ENA]
¡û
>W1910006685
BBJO01000003
Euryarchaeota
Halobellus rufus CBA1103 [BBJO]
112990
113063
+
Pro
TGG
[ENA]
¡û
>W1910186236
CCDK010000002
Euryarchaeota
Haloferax prahovense Arc-Hr [CCDK]
849196
849124
-
Pro
TGG
[ENA]
¡û
>W1910193550
CSTE01000002
Euryarchaeota
Haloferax massiliensis Arc-Hr [CSTE]
1810010
1810082
+
Pro
TGG
[ENA]
¡û
>W1910193783
CVUA01000001
Euryarchaeota
Halolamina sediminis halo-7 halo7 [CVUA]
528232
528304
+
Pro
TGG
[ENA]
¡û
>W1910227006
FNHL01000001
Euryarchaeota
Halogranum gelatinilyticum CGMCC 1.10119 [FNHL]
288075
288002
-
Pro
TGG
[ENA]
¡û
>W1910227112
FNKQ01000003
Euryarchaeota
Halopelagius longus CGMCC 1.12397 [FNKQ]
521200
521273
+
Pro
TGG
[ENA]
¡û
>W1910228427
FNPB01000005
Euryarchaeota
Halobellus clavatus CGMCC 1.10118 [FNPB]
31314
31386
+
Pro
TGG
[ENA]
¡û
>W1910228506
FNQT01000001
Euryarchaeota
Haloplanus vescus CGMCC 1.8712 [FNQT]
1077287
1077215
-
Pro
TGG
[ENA]
¡û
>W1910228588
FNVN01000001
Euryarchaeota
Halobellus limi CGMCC 1.10331 [FNVN]
936253
936326
+
Pro
TGG
[ENA]
¡û
>W1910229618
FOAD01000002
Euryarchaeota
Haloferax larsenii CDM_5 [FOAD]
104451
104523
+
Pro
TGG
[ENA]
¡û
>W1910229755
FODV01000003
Euryarchaeota
Halogranum amylolyticum CGMCC 1.10121 [FODV]
216515
216442
-
Pro
TGG
[ENA]
¡û
>W1910230357
FOOQ01000001
Euryarchaeota
Halopelagius inordinatus CGMCC 1.7739 [FOOQ]
228884
228812
-
Pro
TGG
[ENA]
¡û
>W1910230620
FOXI01000005
Euryarchaeota
Halolamina pelagica CGMCC 1.10329 [FOXI]
73105
73177
+
Pro
TGG
[ENA]
¡û
>W1910230695
FOYS01000001
Euryarchaeota
Halogeometricum limi CGMCC 1.8711 [FOYS]
402886
402814
-
Pro
TGG
[ENA]
¡û
>W1910230748
FOYT01000001
Euryarchaeota
Halogeometricum rufum CGMCC 1.7736 [FOYT]
435573
435501
-
Pro
TGG
[ENA]
¡û
>W1910281628
FQWV01000004
Euryarchaeota
Halobaculum gomorrense DSM 9297 [FQWV]
223638
223711
+
Pro
TGG
[ENA]
¡û
>W1910573485
JPES01000077
Euryarchaeota
Haloferax sp. ATB1 [JPES]
12276
12348
+
Pro
TGG
[ENA]
¡û
>W1910828018
MWUK01000003
Euryarchaeota
Halolamina sp. CBA1230 [MWUK]
2380489
2380561
+
Pro
TGG
[ENA]
¡û
>W1910912503
NHPJ01000064
Euryarchaeota
Halorubrum halodurans Cb34 [NHPJ]
11325
11252
-
Pro
TGG
[ENA]
¡û
>W1911580804
PEND01000002
Euryarchaeota
Halegenticoccus soli SYSU A9-0 [PEND]
178486
178558
+
Pro
TGG
[ENA]
¡û
>W1911629765
PSYS01000001
Euryarchaeota
Haloferax sp. Atlit-47N [PSYS]
1355191
1355263
+
Pro
TGG
[ENA]
¡û
>W1911629824
PSYT01000001
Euryarchaeota
Haloferax sp. Atlit-24N [PSYT]
325875
325803
-
Pro
TGG
[ENA]
¡û
>W1911629895
PSYU01000004
Euryarchaeota
Haloferax sp. Atlit-19N [PSYU]
332747
332675
-
Pro
TGG
[ENA]
¡û
>W1911629898
PSYU01000167
Euryarchaeota
Haloferax sp. Atlit-19N [PSYU]
55
128
+
Pro
TGG
[ENA]
¡û
>W1911629922
PSYV01000001
Euryarchaeota
Haloferax sp. Atlit-16N [PSYV]
187
115
-
Pro
TGG
[ENA]
¡û
>W1911629961
PSYW01000001
Euryarchaeota
Haloferax sp. Atlit-12N [PSYW]
1199861
1199933
+
Pro
TGG
[ENA]
¡û
>W1911630022
PSYX01000001
Euryarchaeota
Haloferax sp. Atlit-10N [PSYX]
187
115
-
Pro
TGG
[ENA]
¡û
>W1911630074
PSYY01000001
Euryarchaeota
Haloferax sp. Atlit-4N [PSYY]
313524
313451
-
Pro
TGG
[ENA]
¡û
>W1911655688
QEQI01000001
Euryarchaeota
Haloferax sp. Atlit-48N [QEQI]
1336622
1336694
+
Pro
TGG
[ENA]
¡û
>W1911655732
QEQJ01000001
Euryarchaeota
Haloferax sp. Atlit-6N [QEQJ]
1434963
1435036
+
Pro
TGG
[ENA]
¡û
>W1911682215
QKMU01000001
Euryarchaeota
Halogeometricum sp. wsp3 [QKMU]
2402761
2402834
+
Pro
TGG
[ENA]
¡û
>W1911696726
QMIM01000011
Euryarchaeota
Halorubrum sp. 48-1-W [QMIM]
3055
2983
-
Pro
TGG
[ENA]
¡û
>W1911709185
QPHM01000001
Euryarchaeota
Haloplanus salinus JCM 18368 [QPHM]
829887
829815
-
Pro
TGG
[ENA]
¡û
>W1911709503
QPLO01000001
Euryarchaeota
Haloferax sp. Atlit-109R [QPLO]
325875
325803
-
Pro
TGG
[ENA]
¡û
>W1911709552
QPLP01000001
Euryarchaeota
Haloferax sp. Atlit-105R [QPLP]
325875
325803
-
Pro
TGG
[ENA]
¡û
>W1911709645
QPLR01000002
Euryarchaeota
Halobellus sp. Atlit-31R [QPLR]
7999
7927
-
Pro
TGG
[ENA]
¡û
>W1911717772
QQRR01000001
Euryarchaeota
Haloprofundus halophilus NK23 [QQRR]
1547899
1547972
+
Pro
TGG
[ENA]
¡û
>W1911717818
QQST01000001
Euryarchaeota
Halopelagius longus BC12-B1 [QQST]
1543037
1543110
+
Pro
TGG
[ENA]
¡û
>W1911769990
QXIJ01000006
Euryarchaeota
Halobellus sp. Atlit-38R [QXIJ]
211375
211447
+
Pro
TGG
[ENA]
¡û
>C151003918
CP002988
Euryarchaeota
halophilic archaeon DL31 [CP002988]
2671812
2671884
+
Pro
TGG
[Ensembl]
¡û
>W1610000748
ABTX01000001
Euryarchaeota
Halogeometricum borinquense DSM 11551 [ABTX]
1144448
1144520
+
Pro
TGG
[ENA]
¡û
>W1610011513
ANPG01000175
Euryarchaeota
Haloferax sp. BAB-2207 BAB2207 [ANPG]
13449
13521
+
Pro
TGG
[ENA]
¡û
>W1610011747
AOHT01000005
Euryarchaeota
Halogeometricum borinquense DSM 11551 [AOHT]
84583
84655
+
Pro
TGG
[ENA]
¡û
>W1610011833
AOHU01000102
Euryarchaeota
Haloferax volcanii DS2 [AOHU]
109546
109618
+
Pro
TGG
[ENA]
¡û
>W1610012864
AOIV01000025
Euryarchaeota
Halogeometricum pallidum JCM 14848 [AOIV]
59684
59612
-
Pro
TGG
[ENA]
¡û
>W1610013476
AOLD01000032
Euryarchaeota
Haloferax sp. ATCC BAA-646 [AOLD]
14671
14743
+
Pro
TGG
[ENA]
¡û
>W1610013546
AOLE01000024
Euryarchaeota
Haloferax sp. ATCC BAA-645 [AOLE]
28049
28121
+
Pro
TGG
[ENA]
¡û
>W1610013587
AOLF01000034
Euryarchaeota
Haloferax sp. ATCC BAA-644 [AOLF]
29918
29846
-
Pro
TGG
[ENA]
¡û
>W1610013608
AOLG01000008
Euryarchaeota
Haloferax prahovense DSM 18310 [AOLG]
314414
314341
-
Pro
TGG
[ENA]
¡û
>W1610013691
AOLH01000025
Euryarchaeota
Haloferax lucentense DSM 14919 [AOLH]
257030
257102
+
Pro
TGG
[ENA]
¡û
>W1610013739
AOLI01000025
Euryarchaeota
Haloferax larsenii JCM 13917 [AOLI]
4424
4352
-
Pro
TGG
[ENA]
¡û
>W1610013758
AOLJ01000011
Euryarchaeota
Haloferax gibbonsii ATCC 33959 [AOLJ]
632235
632308
+
Pro
TGG
[ENA]
¡û
>W1610013818
AOLK01000011
Euryarchaeota
Haloferax elongans ATCC BAA-1513 [AOLK]
240381
240309
-
Pro
TGG
[ENA]
¡û
>W1610013880
AOLL01000013
Euryarchaeota
Haloferax alexandrinus JCM 10717 [AOLL]
111709
111781
+
Pro
TGG
[ENA]
¡û
>W1610013945
AOLM01000022
Euryarchaeota
Haloferax sulfurifontis ATCC BAA-897 [AOLM]
20893
20965
+
Pro
TGG
[ENA]
¡û
>W1610013974
AOLN01000011
Euryarchaeota
Haloferax mucosum ATCC BAA-1512 [AOLN]
210902
210974
+
Pro
TGG
[ENA]
¡û
>W1610014023
AOLO01000007
Euryarchaeota
Haloferax mediterranei ATCC 33500 [AOLO]
631564
631637
+
Pro
TGG
[ENA]
¡û
>W1610014067
AOLP01000009
Euryarchaeota
Haloferax denitrificans ATCC 35960 [AOLP]
323909
323836
-
Pro
TGG
[ENA]
¡û
>W1610014593
AOMD01000027
Euryarchaeota
Halococcus saccharolyticus DSM 5350 [AOMD]
64411
64338
-
Pro
TGG
[ENA]
¡û
>W1610019187
ARPZ01000524
Euryarchaeota
Haloquadratum sp. J07HQX50 [ARPZ]
696
624
-
Pro
TGG
[ENA]
¡û
>W1610020291
ASGZ01000027
Euryarchaeota
Candidatus Halobonum tyrrellensis tyrrellensis G22 [ASGZ]
4159
4087
-
Pro
TGG
[ENA]
¡û
>W1610024348
ATYM01000001
Euryarchaeota
Haloplanus natans DSM 17983 [ATYM]
546969
547041
+
Pro
TGG
[ENA]
¡û
>W1610617575
LGUC01000001
Euryarchaeota
Halolamina pelagica CDK2 [LGUC]
948864
948791
-
Pro
TGG
[ENA]
¡û
>W1610675793
LKIR01000135
Euryarchaeota
Haloparvum sedimenti DYS4 [LKIR]
327834
327906
+
Pro
TGG
[ENA]
¡û
>W1610682305
LKMR01000130
Euryarchaeota
Natrialbaceae archaeon PL-Br10_E2g26 [LKMR]
5137
5065
-
Pro
TGG
[ENA]
¡û
>W1610682549
LKNC01000120
Euryarchaeota
Natrialbaceae archaeon Tc-Br11_E2g1 [LKNC]
6009
6081
+
Pro
TGG
[ENA]
¡û
>W1610682563
LKND01000006
Euryarchaeota
Natrialbaceae archaeon Tc-Br11_E2g14 [LKND]
30256
30183
-
Pro
TGG
[ENA]
¡û
>W1610779613
LOAJ01000001
Euryarchaeota
Halorubrum aethiopicum SAH-A6 [LOAJ]
852813
852885
+
Pro
TGG
[ENA]
¡û
>W1610784293
LOEP01000016
Euryarchaeota
Haloferax sp. Q22 [LOEP]
250995
251068
+
Pro
TGG
[ENA]
¡û
>W1610799836
LOPV01000097
Euryarchaeota
Haloferax profundi SB29 [LOPV]
17018
17091
+
Pro
TGG
[ENA]
¡û
>W1610799893
LOPW01000056
Euryarchaeota
Haloferax marisrubri SB3 [LOPW]
112063
112135
+
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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