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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.283681 (25 seq.)
>A171002633
CP002921
Euryarchaeota
Haloarcula hispanica ATCC 33960 CGMCC 1.2049 [CP002921, CP002922]
2569919
2569846
-
Arg
CCG
-
¡û
>A171003966
CP006884
Euryarchaeota
Haloarcula hispanica N601 [CP006884, CP006885]
2581352
2581279
-
Arg
CCG
-
¡û
>A171005823
CP010529
Euryarchaeota
Haloarcula sp. CBA1115 [CP010529]
1184219
1184146
-
Arg
CCG
-
¡û
>A171006859
CP019067
Euryarchaeota
Halorientalis sp. IM1011 [CP019067]
2098441
2098514
+
Arg
CCG
-
¡û
>At0783
AY596297
Euryarchaeota
Haloarcula marismortui ATCC 43049 [AY596297, AY596298]
1945576
1945504
-
Arg
CCG
[Ensembl]
¡û
>WENV170659989
JXWS01073495
[JXWS] soil metagenome; rice field; elevated CO2
551
625
+
Arg
CCG
[ENA]
¢þ
>W1910175105
BIXZ01000002
Euryarchaeota
Haloarcula mannanilytica MD-130 MD130-1 [BIXZ]
634116
634189
+
Arg
CCG
[ENA]
¡û
>W1910226729
FNBK01000006
Euryarchaeota
Halorientalis regularis IBRC-M 10760 [FNBK]
86994
87066
+
Arg
CCG
[ENA]
¡û
>W1910228362
FNOF01000002
Euryarchaeota
Haloarcula vallismortis DSM 3756 [FNOF]
22884
22810
-
Arg
CCG
[ENA]
¡û
>W1910229701
FOCX01000011
Euryarchaeota
Halorientalis persicus IBRC-M 10043 [FOCX]
89026
89098
+
Arg
CCG
[ENA]
¡û
>W1910583048
JXAO01000010
Euryarchaeota
Haloarcula argentinensis H5-DGR [JXAO]
50930
50857
-
Arg
CCG
[ENA]
¡û
>W1910617590
LIUF01000002
Euryarchaeota
Haloarcula rubripromontorii SL3 [LIUF]
180944
181018
+
Arg
CCG
[ENA]
¡û
>W1911682228
QKMU01000001
Euryarchaeota
Halogeometricum sp. wsp3 [QKMU]
1902843
1902769
-
Arg
CCG
[ENA]
¡û
>W1911709454
QPLN01000001
Euryarchaeota
Haloarcula sp. Atlit-120R [QPLN]
774704
774630
-
Arg
CCG
[ENA]
¡û
>W1911709591
QPLQ01000001
Euryarchaeota
Haloarcula sp. Atlit-47R [QPLQ]
801598
801524
-
Arg
CCG
[ENA]
¡û
>W1911770010
QXIK01000002
Euryarchaeota
Haloarcula sp. Atlit-7R [QXIK]
111064
111138
+
Arg
CCG
[ENA]
¡û
>W1610014127
AOLQ01000007
Euryarchaeota
Haloarcula vallismortis ATCC 29715 [AOLQ]
22789
22715
-
Arg
CCG
[ENA]
¡û
>W1610014169
AOLR01000007
Euryarchaeota
Haloarcula sinaiiensis ATCC 33800 [AOLR]
19788
19714
-
Arg
CCG
[ENA]
¡û
>W1610014232
AOLS01000062
Euryarchaeota
Haloarcula californiae ATCC 33799 [AOLS]
36655
36581
-
Arg
CCG
[ENA]
¡û
>W1610014264
AOLW01000009
Euryarchaeota
Haloarcula amylolytica JCM 13557 [AOLW]
1313
1387
+
Arg
CCG
[ENA]
¡û
>W1610014337
AOLX01000024
Euryarchaeota
Haloarcula argentinensis DSM 12282 [AOLX]
6328
6402
+
Arg
CCG
[ENA]
¡û
>W1610014365
AOLY01000005
Euryarchaeota
Haloarcula japonica DSM 6131 [AOLY]
269627
269552
-
Arg
CCG
[ENA]
¡û
>W1610061918
BCNA01000001
Euryarchaeota
Haloarcula sp. CBA1128 [BCNA]
1902575
1902500
-
Arg
CCG
[ENA]
¡û
>W1610061939
BCNB01000006
Euryarchaeota
Haloarcula sp. CBA1127 [BCNB]
1046333
1046405
+
Arg
CCG
[ENA]
¡û
>W1610881042
LRHL01000043
Euryarchaeota
Haloarcula sp. K1 [LRHL]
504799
504874
+
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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