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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.283684 (20 seq.)
>A171000004
AM774415
Euryarchaeota
Halobacterium salinarum R1 DSM 671 [AM774415]
400936
401009
+
Gln
TTG
-
¡û
>A171006949
CP019327
Euryarchaeota
Natronorubrum daqingense JX313 [CP019327]
571944
572016
+
Gln
TTG
-
¡û
>A178000361
CP003929
Euryarchaeota
Natronococcus occultus SP4 [CP003929]
960785
960683
-
Gln
TTG
-
¡û
>A178000692
CP019067
Euryarchaeota
Halorientalis sp. IM1011 [CP019067]
630631
630507
-
Gln
TTG
-
¡û
>WENV180318213
OBKM01000098
[OBKM] metagenome; water
2852
2780
-
Gln
TTG
[ENA]
¢þ
>WENV180318324
OBKM01000402
[OBKM] metagenome; water
1278
1205
-
Gln
TTG
[ENA]
¢þ
>WENV180318328
OBKM01000416
[OBKM] metagenome; water
2352
2424
+
Gln
TTG
[ENA]
¢þ
>WENV180318466
OBKM01001104
[OBKM] metagenome; water
5928
5855
-
Gln
TTG
[ENA]
¢þ
>WENV180318704
OBKM01005546
[OBKM] metagenome; water
2993
3067
+
Gln
TTG
[ENA]
¢þ
>At0797
AE004437
Euryarchaeota
Halobacterium salinarum NRC-1; ATCC 700922 [AE004437]
409659
409731
+
Gln
TTG
[Ensembl]
¡û
>WENV170659861
JXWS01012777
[JXWS] soil metagenome; rice field; elevated CO2
326
253
-
Gln
TTG
[ENA]
¢þ
>WENV170680045
LFCJ01002916
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
11361
11433
+
Gln
TTG
[ENA]
¢þ
>WENV170681177
LFFM01000171
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
23034
23106
+
Gln
TTG
[ENA]
¢þ
>W1910229579
FNYR01000011
Euryarchaeota
Halohasta litchfieldiae DSM 22187 [FNYR]
79226
79298
+
Gln
TTG
[ENA]
¡û
>W1910230039
FOJA01000001
Euryarchaeota
Halobacterium jilantaiense CGMCC 1.5337 [FOJA]
962997
962925
-
Gln
TTG
[ENA]
¡û
>W1911682334
QKNY01000003
Euryarchaeota
Halonotius aquaticus F13-13 [QKNY]
107410
107337
-
Gln
TTG
[ENA]
¡û
>W1610014464
AOMA01000082
Euryarchaeota
Halobiforma nitratireducens JCM 10879 [AOMA]
42447
42520
+
Gln
TTG
[ENA]
¡û
>W1610018986
AQZY01000010
Euryarchaeota
Halomicrobium katesii DSM 19301 [AQZY]
610533
610461
-
Gln
TTG
[ENA]
¡û
>W1610085249
CEMQ01000001
Euryarchaeota
Halobacterium hubeiense JI20-7 [CEMQ]
527643
527570
-
Gln
TTG
[ENA]
¡û
>W1610085331
CEMZ01000001
Euryarchaeota
Halobacterium hubeiense JI20-8 [CEMZ]
527546
527473
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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