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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.283764 (84 seq.)
>A171001203
CP001868
Euryarchaeota
Haloferax mediterranei ATCC 33500 CGMCC 1.2087 [CP001868]
257899
257826
-
His
GTG
-
¡û
>A171001426
CP001956
Euryarchaeota
Haloferax volcanii DS2 [CP001956]
259370
259297
-
His
GTG
-
¡û
>A171001601
CP002062
Euryarchaeota
Halalkalicoccus jeotgali B3 [CP002062]
350458
350385
-
His
GTG
-
¡û
>A171004159
CP007055
Euryarchaeota
Halostagnicola larsenii XH-48 [CP007055]
279744
279670
-
His
GTG
-
¡û
>A171004184
CP007060
Euryarchaeota
Halobacterium sp. DL1 [CP007060]
2650200
2650273
+
His
GTG
-
¡û
>A171006238
CP011947
Euryarchaeota
Haloferax gibbonsii ARA6 [CP011947]
240268
240195
-
His
GTG
-
¡û
>WENV180318205
OBKM01000079
[OBKM] metagenome; water
21503
21429
-
His
GTG
[ENA]
¢þ
>WENV180318206
OBKM01000080
[OBKM] metagenome; water
6148
6075
-
His
GTG
[ENA]
¢þ
>WENV180318518
OBKM01001538
[OBKM] metagenome; water
2498
2425
-
His
GTG
[ENA]
¢þ
>WENV180318612
OBKM01002813
[OBKM] metagenome; water
817
744
-
His
GTG
[ENA]
¢þ
>WENV170679559
LFCJ01000024
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
49279
49352
+
His
GTG
[ENA]
¢þ
>WENV170680052
LFCJ01003085
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
3321
3248
-
His
GTG
[ENA]
¢þ
>WENV170680070
LFCJ01003465
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
10600
10527
-
His
GTG
[ENA]
¢þ
>WENV170681225
LFFM01000229
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
25575
25648
+
His
GTG
[ENA]
¢þ
>WENV170681241
LFFM01000262
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
177
104
-
His
GTG
[ENA]
¢þ
>WENV170681243
LFFM01000264
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
19608
19535
-
His
GTG
[ENA]
¢þ
>WENV170681930
LFFM01004093
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
8793
8867
+
His
GTG
[ENA]
¢þ
>WENV170682094
LFFM01006011
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
6634
6708
+
His
GTG
[ENA]
¢þ
>WENV170701949
LKMJ01000140
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
35967
36040
+
His
GTG
[ENA]
¢þ
>WENV170702399
LKMJ01001719
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
16317
16244
-
His
GTG
[ENA]
¢þ
>WENV170702757
LKMJ01004042
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
13455
13381
-
His
GTG
[ENA]
¢þ
>WENV170702995
LKMJ01005318
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
3321
3248
-
His
GTG
[ENA]
¢þ
>WENV170703536
LKMJ01013332
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
2819
2892
+
His
GTG
[ENA]
¢þ
>WENV170704015
LKMJ01020700
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
2345
2418
+
His
GTG
[ENA]
¢þ
>W1910006689
BBJO01000003
Euryarchaeota
Halobellus rufus CBA1103 [BBJO]
130348
130275
-
His
GTG
[ENA]
¡û
>W1910186235
CCDK010000002
Euryarchaeota
Haloferax prahovense Arc-Hr [CCDK]
856558
856485
-
His
GTG
[ENA]
¡û
>W1910193549
CSTE01000002
Euryarchaeota
Haloferax massiliensis Arc-Hr [CSTE]
1802908
1802981
+
His
GTG
[ENA]
¡û
>W1910227005
FNHL01000001
Euryarchaeota
Halogranum gelatinilyticum CGMCC 1.10119 [FNHL]
294522
294449
-
His
GTG
[ENA]
¡û
>W1910228594
FNVN01000001
Euryarchaeota
Halobellus limi CGMCC 1.10331 [FNVN]
975568
975495
-
His
GTG
[ENA]
¡û
>W1910229590
FNYR01000026
Euryarchaeota
Halohasta litchfieldiae DSM 22187 [FNYR]
3167
3094
-
His
GTG
[ENA]
¡û
>W1910229617
FOAD01000002
Euryarchaeota
Haloferax larsenii CDM_5 [FOAD]
94360
94433
+
His
GTG
[ENA]
¡û
>W1910229754
FODV01000003
Euryarchaeota
Halogranum amylolyticum CGMCC 1.10121 [FODV]
225076
225003
-
His
GTG
[ENA]
¡û
>W1910230500
FOTC01000003
Euryarchaeota
Halogranum rubrum CGMCC 1.7738 [FOTC]
293043
292970
-
His
GTG
[ENA]
¡û
>W1910230849
FOZS01000002
Euryarchaeota
Halostagnicola kamekurae DSM 22427 [FOZS]
132772
132845
+
His
GTG
[ENA]
¡û
>W1910281627
FQWV01000004
Euryarchaeota
Halobaculum gomorrense DSM 9297 [FQWV]
216543
216617
+
His
GTG
[ENA]
¡û
>W1910547248
FZNQ01000001
Euryarchaeota
Halorubrum vacuolatum DSM 8800 [FZNQ]
283545
283618
+
His
GTG
[ENA]
¡û
>W1910572556
JMIP02000014
Euryarchaeota
Halostagnicola sp. A56 [JMIP]
613011
613084
+
His
GTG
[ENA]
¡û
>W1910573484
JPES01000077
Euryarchaeota
Haloferax sp. ATB1 [JPES]
5068
5141
+
His
GTG
[ENA]
¡û
>W1911493165
OBEJ01000005
Euryarchaeota
Natronoarchaeum philippinense DSM 27208 [OBEJ]
94949
94873
-
His
GTG
[ENA]
¡û
>W1911629764
PSYS01000001
Euryarchaeota
Haloferax sp. Atlit-47N [PSYS]
1347880
1347953
+
His
GTG
[ENA]
¡û
>W1911629823
PSYT01000001
Euryarchaeota
Haloferax sp. Atlit-24N [PSYT]
333145
333072
-
His
GTG
[ENA]
¡û
>W1911629894
PSYU01000004
Euryarchaeota
Haloferax sp. Atlit-19N [PSYU]
340109
340036
-
His
GTG
[ENA]
¡û
>W1911629921
PSYV01000001
Euryarchaeota
Haloferax sp. Atlit-16N [PSYV]
7414
7341
-
His
GTG
[ENA]
¡û
>W1911629960
PSYW01000001
Euryarchaeota
Haloferax sp. Atlit-12N [PSYW]
1192636
1192709
+
His
GTG
[ENA]
¡û
>W1911630021
PSYX01000001
Euryarchaeota
Haloferax sp. Atlit-10N [PSYX]
7414
7341
-
His
GTG
[ENA]
¡û
>W1911630073
PSYY01000001
Euryarchaeota
Haloferax sp. Atlit-4N [PSYY]
320581
320508
-
His
GTG
[ENA]
¡û
>W1911655687
QEQI01000001
Euryarchaeota
Haloferax sp. Atlit-48N [QEQI]
1329311
1329384
+
His
GTG
[ENA]
¡û
>W1911655731
QEQJ01000001
Euryarchaeota
Haloferax sp. Atlit-6N [QEQJ]
1427710
1427783
+
His
GTG
[ENA]
¡û
>W1911696815
QNGA01000001
Euryarchaeota
halophilic archaeon H22 [QNGA]
446725
446652
-
His
GTG
[ENA]
¡û
>W1911709502
QPLO01000001
Euryarchaeota
Haloferax sp. Atlit-109R [QPLO]
333145
333072
-
His
GTG
[ENA]
¡û
>W1911709551
QPLP01000001
Euryarchaeota
Haloferax sp. Atlit-105R [QPLP]
333145
333072
-
His
GTG
[ENA]
¡û
>W1911709897
QPMJ01000003
Euryarchaeota
Halorussus rarus TBN4 [QPMJ]
106221
106148
-
His
GTG
[ENA]
¡û
>W1911717771
QQRR01000001
Euryarchaeota
Haloprofundus halophilus NK23 [QQRR]
1540963
1541036
+
His
GTG
[ENA]
¡û
>SRA1013798
SRR023631.23137
High saltern (Pond 5) microbes attempt 1 (SRP001107)
4
77
+
His
GTG
[SRA]
>W1610004189
AGIR01000001
Euryarchaeota
Halobacterium sp. DL1 [AGIR]
708280
708207
-
Pseudo
GTG
[ENA]
¡û
>W1610005884
ALJD01000004
Euryarchaeota
Halogranum salarium B-1 [ALJD]
269941
269868
-
Pseudo
GTG
[ENA]
¡û
>W1610011832
AOHU01000102
Euryarchaeota
Haloferax volcanii DS2 [AOHU]
102274
102347
+
Pseudo
GTG
[ENA]
¡û
>W1610011877
AOHV01000042
Euryarchaeota
Halalkalicoccus jeotgali B3 [AOHV]
351613
351686
+
Pseudo
GTG
[ENA]
¡û
>W1610013475
AOLD01000032
Euryarchaeota
Haloferax sp. ATCC BAA-646 [AOLD]
7229
7302
+
Pseudo
GTG
[ENA]
¡û
>W1610013545
AOLE01000024
Euryarchaeota
Haloferax sp. ATCC BAA-645 [AOLE]
20607
20680
+
Pseudo
GTG
[ENA]
¡û
>W1610013586
AOLF01000034
Euryarchaeota
Haloferax sp. ATCC BAA-644 [AOLF]
37360
37287
-
Pseudo
GTG
[ENA]
¡û
>W1610013607
AOLG01000008
Euryarchaeota
Haloferax prahovense DSM 18310 [AOLG]
321776
321703
-
Pseudo
GTG
[ENA]
¡û
>W1610013690
AOLH01000025
Euryarchaeota
Haloferax lucentense DSM 14919 [AOLH]
249730
249803
+
Pseudo
GTG
[ENA]
¡û
>W1610013738
AOLI01000025
Euryarchaeota
Haloferax larsenii JCM 13917 [AOLI]
15856
15783
-
Pseudo
GTG
[ENA]
¡û
>W1610013757
AOLJ01000011
Euryarchaeota
Haloferax gibbonsii ATCC 33959 [AOLJ]
624989
625062
+
Pseudo
GTG
[ENA]
¡û
>W1610013817
AOLK01000011
Euryarchaeota
Haloferax elongans ATCC BAA-1513 [AOLK]
250468
250395
-
Pseudo
GTG
[ENA]
¡û
>W1610013879
AOLL01000013
Euryarchaeota
Haloferax alexandrinus JCM 10717 [AOLL]
104408
104481
+
Pseudo
GTG
[ENA]
¡û
>W1610013944
AOLM01000022
Euryarchaeota
Haloferax sulfurifontis ATCC BAA-897 [AOLM]
13813
13886
+
Pseudo
GTG
[ENA]
¡û
>W1610013973
AOLN01000011
Euryarchaeota
Haloferax mucosum ATCC BAA-1512 [AOLN]
202533
202606
+
Pseudo
GTG
[ENA]
¡û
>W1610014022
AOLO01000007
Euryarchaeota
Haloferax mediterranei ATCC 33500 [AOLO]
624058
624131
+
Pseudo
GTG
[ENA]
¡û
>W1610014066
AOLP01000009
Euryarchaeota
Haloferax denitrificans ATCC 35960 [AOLP]
331183
331110
-
Pseudo
GTG
[ENA]
¡û
>W1610020290
ASGZ01000027
Euryarchaeota
Candidatus Halobonum tyrrellensis tyrrellensis G22 [ASGZ]
10316
10243
-
Pseudo
GTG
[ENA]
¡û
>W1610029917
AXZD01000002
Euryarchaeota
Halalkalicoccus jeotgali B3 [AXZD]
34766
34693
-
Pseudo
GTG
[ENA]
¡û
>W1610041329
BANO01000009
Euryarchaeota
Halarchaeum acidiphilum MH1-52-1 [BANO]
11525
11452
-
Pseudo
GTG
[ENA]
¡û
>W1610041527
BATA01000012
Euryarchaeota
Halarchaeum acidiphilum MH1-52-1 JCM 16109 [BATA]
41830
41757
-
Pseudo
GTG
[ENA]
¡û
>W1610682179
LKML01000072
Euryarchaeota
Haloferacaceae archaeon B1-Br10_E2g22 [LKML]
10600
10527
-
Pseudo
GTG
[ENA]
¡û
>W1610682316
LKMS01000030
Euryarchaeota
Haloferacaceae archaeon PL-Br10_E2g29 [LKMS]
3321
3248
-
Pseudo
GTG
[ENA]
¡û
>W1610682603
LKNE01000070
Euryarchaeota
Haloferacaceae archaeon Tc-Br11_E2g18 [LKNE]
156
83
-
Pseudo
GTG
[ENA]
¡û
>W1610682638
LKNF01000152
Euryarchaeota
Natrialbaceae archaeon Tc-Br11_E2g28 [LKNF]
6634
6708
+
Pseudo
GTG
[ENA]
¡û
>W1610784292
LOEP01000016
Euryarchaeota
Haloferax sp. Q22 [LOEP]
243517
243590
+
Pseudo
GTG
[ENA]
¡û
>W1610799789
LOPU01000016
Euryarchaeota
Haloprofundus marisrubri SB9 [LOPU]
3058
2985
-
Pseudo
GTG
[ENA]
¡û
>W1610799835
LOPV01000097
Euryarchaeota
Haloferax profundi SB29 [LOPV]
9507
9580
+
Pseudo
GTG
[ENA]
¡û
>W1610799892
LOPW01000056
Euryarchaeota
Haloferax marisrubri SB3 [LOPW]
104760
104833
+
Pseudo
GTG
[ENA]
¡û
>W1610925061
LTAZ01000007
Euryarchaeota
Halalkalicoccus paucihalophilus DSM 24557 [LTAZ]
118874
118947
+
Pseudo
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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