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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.283913 (24 seq.)
>W1711185755
LWNQ01000019
Actinomycetota
Dermabacter sp. HMSC08H10 [LWNQ]
56735
56810
+
Thr
CGT
[ENA]
¡û
>W1711186335
LWOD01000030
Actinomycetota
Dermabacter sp. HMSC06F07 [LWOD]
71609
71684
+
Thr
CGT
[ENA]
¡û
>W131206260
ATFO01000002
Actinomycetota
Dermabacter sp. HFH0086 [ATFO]
50327
50402
+
Thr
CGT
[ENA]
¡û
>WENV180312779
OBJZ01000082
[OBJZ] human gut metagenome; fecal sample
39649
39574
-
Thr
CGT
[ENA]
¢þ
>WENV180554452
OCJN01001901
[OCJN] human skin metagenome; Infant 1 DOL 23 skin
86
161
+
Thr
CGT
[ENA]
¢þ
>WENV182812857
OJXV01000173
[OJXV] human gut metagenome; human gut
5192
5267
+
Thr
CGT
[ENA]
¢þ
>WENV182819722
OKAF01003924
[OKAF] human gut metagenome; human gut
832
907
+
Thr
CGT
[ENA]
¢þ
>WENV182821246
OKAT01001326
[OKAT] human gut metagenome; human gut
282
357
+
Thr
CGT
[ENA]
¢þ
>WENV182825549
OKCK01000404
[OKCK] human gut metagenome; human gut
2733
2658
-
Thr
CGT
[ENA]
¢þ
>WENV182831628
OKEG01000037
[OKEG] human gut metagenome; human gut
57796
57871
+
Thr
CGT
[ENA]
¢þ
>WENV182839071
OKGZ01001624
[OKGZ] human gut metagenome; human gut
340
265
-
Thr
CGT
[ENA]
¢þ
>WENV182845670
OKJE01000657
[OKJE] human gut metagenome; human gut
1762
1837
+
Thr
CGT
[ENA]
¢þ
>WENV182849737
OKKT01002226
[OKKT] human gut metagenome; human gut
499
574
+
Thr
CGT
[ENA]
¢þ
>WENV182855124
OKMY01000070
[OKMY] human gut metagenome; human gut
57801
57876
+
Thr
CGT
[ENA]
¢þ
>W141400418
JDRS01000002
Actinomycetota
Dermabacter hominis 1368 [JDRS]
233083
233158
+
Thr
CGT
[ENA]
¡û
>W1910321395
FSEE01000030
Actinomycetota
Mycobacteroides abscessus subsp. abscessus 417 [FSEE]
16607
16532
-
Thr
CGT
[ENA]
¡û
>W1911709373
QPKL01000027
Actinomycetota
Kocuria sp. CPCC 104605 [QPKL]
28003
28076
+
Thr
CGT
[ENA]
¡û
>W1810187326
PKHM01000006
Actinomycetota
Dermabacter hominis UMB0490 [PKHM]
31138
31063
-
Thr
CGT
[ENA]
¡û
>W1511353080
JROX01000196
Actinomycetota
Kocuria sp. ZOR0020 [JROX]
1433
1360
-
Thr
CGT
[ENA]
¡û
>C161039613
CP012117
Actinomycetota
Dermabacter vaginalis AD1-86 [CP012117]
2004163
2004238
+
Thr
CGT
[Ensembl]
¡û
>W1610069249
BCSI01000002
Actinomycetota
Dermabacter hominis NBRC 106157 [BCSI]
274906
274831
-
Thr
CGT
[ENA]
¡û
>W1610095063
CYUG01000017
Actinomycetota
Dermabacter indicis massiliensis [CYUG]
65212
65287
+
Thr
CGT
[ENA]
¡û
>W1710066622
BCSI01000002
Actinomycetota
Dermabacter hominis NBRC 106157 [BCSI]
274906
274831
-
Thr
CGT
[ENA]
¡û
>W1710097858
CYUG01000017
Actinomycetota
Dermabacter indicis massiliensis [CYUG]
65212
65287
+
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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